Wall clock time and date at job start Mon Mar 30 2020 01:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.70988 * 2 1 4 4 O 1.43177 * 109.70714 * 120.58626 * 2 1 3 5 5 C 1.36115 * 116.68855 * 165.96492 * 4 2 1 6 6 C 1.38705 * 119.38902 * 162.68577 * 5 4 2 7 7 C 1.38199 * 120.06265 * 179.83723 * 6 5 4 8 8 C 1.38258 * 120.10896 * 359.69677 * 7 6 5 9 9 C 1.38189 * 120.11671 * 0.62460 * 8 7 6 10 10 C 1.38708 * 120.06648 * 359.45506 * 9 8 7 11 11 O 1.36103 * 119.40338 * 179.90955 * 10 9 8 12 12 C 1.43163 * 116.71750 * 162.97455 * 11 10 9 13 13 H 1.09000 * 109.70693 * 165.86695 * 12 11 10 14 14 C 1.50704 * 109.73933 * 286.46241 * 12 11 10 15 15 O 1.21296 * 119.99947 * 23.88870 * 14 12 11 16 16 N 1.34776 * 120.00083 * 203.89439 * 14 12 11 17 17 C 1.46498 * 119.99979 * 5.49436 * 16 14 12 18 18 C 1.37101 * 119.99869 * 185.49188 * 16 14 12 19 19 H 1.08001 * 120.00084 * 6.48549 * 18 16 14 20 20 C 1.38956 * 119.99814 * 186.47564 * 18 16 14 21 21 N 1.31413 * 119.99987 * 6.53301 * 20 18 16 22 22 Si 1.86793 * 119.99910 * 186.52862 * 20 18 16 23 23 H 1.48500 * 109.47220 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47200 * 120.00291 * 22 20 18 25 25 H 1.48499 * 109.47435 * 240.00352 * 22 20 18 26 26 H 1.08998 * 109.46696 * 294.89568 * 1 2 3 27 27 H 1.09006 * 109.46682 * 54.88929 * 1 2 3 28 28 H 1.08995 * 109.47103 * 174.88946 * 1 2 3 29 29 H 1.07995 * 119.97156 * 359.85922 * 6 5 4 30 30 H 1.07995 * 119.94150 * 179.97438 * 7 6 5 31 31 H 1.08004 * 119.93817 * 180.37151 * 8 7 6 32 32 H 1.07998 * 119.96862 * 179.72466 * 9 8 7 33 33 H 1.09003 * 109.47188 * 354.27647 * 17 16 14 34 34 H 1.08997 * 109.47312 * 114.28306 * 17 16 14 35 35 H 1.09004 * 109.47356 * 234.27839 * 17 16 14 36 36 H 0.96999 * 119.99904 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 8 2.0129 -0.6859 1.1604 5 6 3.3297 -1.0302 1.1633 6 6 3.9447 -1.3589 2.3623 7 6 5.2802 -1.7138 2.3809 8 6 6.0051 -1.7483 1.2041 9 6 5.4002 -1.4155 0.0070 10 6 4.0605 -1.0568 -0.0185 11 8 3.4788 -0.7298 -1.2047 12 6 2.0477 -0.7361 -1.2431 13 1 1.7019 -0.2267 -2.1426 14 6 1.5447 -2.1568 -1.2386 15 8 2.2359 -3.0434 -0.7832 16 7 0.3270 -2.4421 -1.7408 17 6 -0.4576 -1.3946 -2.3992 18 6 -0.1775 -3.7125 -1.6354 19 1 0.3518 -4.4578 -1.0602 20 6 -1.3700 -4.0413 -2.2685 21 7 -1.9478 -3.1762 -3.0715 22 14 -2.1516 -5.7128 -1.9782 23 1 -1.3099 -6.4964 -1.0386 24 1 -3.5056 -5.5317 -1.3958 25 1 -2.2610 -6.4390 -3.2688 26 1 -0.3633 0.4326 0.9322 27 1 -0.3633 0.5911 -0.8407 28 1 -0.3633 -1.0235 -0.0915 29 1 3.3793 -1.3378 3.2822 30 1 5.7572 -1.9690 3.3156 31 1 7.0471 -2.0319 1.2210 32 1 5.9699 -1.4390 -0.9102 33 1 0.0557 -0.4384 -2.2981 34 1 -0.5714 -1.6360 -3.4560 35 1 -1.4410 -1.3302 -1.9334 36 1 -2.7800 -3.4058 -3.5137 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195143567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:10 Heat of formation + Delta-G solvation = -49.502366 kcal Electronic energy + Delta-G solvation = -22585.564995 eV Core-core repulsion = 19229.966975 eV Total energy + Delta-G solvation = -3355.598020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.20405 -38.53448 -37.12007 -36.77921 -34.80137 -32.90443 -31.28459 -30.31575 -28.75179 -27.18616 -26.42556 -24.25473 -23.24372 -22.30665 -21.30425 -18.73503 -18.36532 -17.45649 -16.94037 -16.38506 -15.96632 -15.22605 -14.75118 -14.51310 -14.32138 -14.18915 -13.68462 -13.48779 -13.27548 -13.26356 -12.61771 -12.37129 -12.04372 -11.79611 -11.62603 -11.58645 -11.34453 -11.13383 -11.02537 -10.85432 -10.59352 -10.36925 -10.23470 -9.89271 -9.15025 -8.68570 -8.18309 -7.94900 -7.52061 -6.33331 -3.90388 1.66655 1.72356 3.07146 3.20779 3.27695 3.35758 3.39970 3.85400 4.03486 4.13154 4.55481 4.67453 4.99645 5.04583 5.12048 5.23454 5.27259 5.42575 5.57226 5.58242 5.66550 5.74402 5.86427 5.98191 6.13391 6.22770 6.42845 6.50689 6.59411 6.76205 6.88754 6.98141 7.27031 7.31574 7.48865 7.80821 7.95041 8.37773 9.08482 9.30315 9.82101 10.60791 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.025443 B = 0.005935 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.248967 B = 4717.030198 C = 5083.020989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.067 3.933 3 H 0.083 0.917 4 O -0.299 6.299 5 C 0.071 3.929 6 C -0.121 4.121 7 C -0.126 4.126 8 C -0.124 4.124 9 C -0.117 4.117 10 C 0.080 3.920 11 O -0.290 6.290 12 C 0.038 3.962 13 H 0.138 0.862 14 C 0.422 3.578 15 O -0.570 6.570 16 N -0.438 5.438 17 C 0.105 3.895 18 C -0.297 4.297 19 H 0.105 0.895 20 C 0.028 3.972 21 N -0.887 5.887 22 Si 0.931 3.069 23 H -0.268 1.268 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.024 0.976 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.248 8.493 5.110 11.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.010 3.990 3 H 0.101 0.899 4 O -0.213 6.213 5 C 0.026 3.974 6 C -0.139 4.139 7 C -0.144 4.144 8 C -0.142 4.142 9 C -0.136 4.136 10 C 0.034 3.966 11 O -0.203 6.203 12 C -0.022 4.022 13 H 0.155 0.845 14 C 0.208 3.792 15 O -0.453 6.453 16 N -0.158 5.158 17 C -0.038 4.038 18 C -0.425 4.425 19 H 0.123 0.877 20 C -0.174 4.174 21 N -0.528 5.528 22 Si 0.758 3.242 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.331 8.064 5.166 11.480 hybrid contribution -0.763 -0.716 -0.251 1.075 sum 5.568 7.348 4.915 10.448 Atomic orbital electron populations 1.22238 0.90677 1.05812 1.03000 1.23008 0.97320 0.94482 0.84180 0.89940 1.86286 1.21752 1.73053 1.40257 1.18848 0.83887 1.01205 0.93457 1.20326 0.94687 1.03403 0.95507 1.20744 0.93324 1.02057 0.98277 1.20754 0.99842 1.01824 0.91788 1.20332 0.92372 1.01862 0.99047 1.18795 0.93376 1.00323 0.84068 1.86300 1.19725 1.83775 1.30517 1.23294 0.79977 0.98044 1.00890 0.84482 1.19815 0.83460 0.89214 0.86667 1.90572 1.56101 1.47233 1.51443 1.43716 1.13363 1.10143 1.48533 1.22108 0.94887 0.86466 1.00359 1.19869 1.04881 0.87897 1.29831 0.87750 1.25312 0.96908 0.99757 0.95460 1.70105 1.19173 1.34915 1.28606 0.85761 0.78811 0.81274 0.78339 1.19215 1.20553 1.20628 0.91277 0.89650 0.89014 0.85426 0.85723 0.85708 0.85387 0.95780 0.90282 0.91257 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 7.92 37.16 0.29 -2.24 16 2 C 0.07 1.17 3.34 -26.49 -0.09 1.09 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 O -0.30 -6.01 9.71 -32.89 -0.32 -6.33 16 5 C 0.07 1.41 5.89 -39.14 -0.23 1.18 16 6 C -0.12 -2.03 9.96 -39.42 -0.39 -2.43 16 7 C -0.13 -1.82 10.04 -39.59 -0.40 -2.22 16 8 C -0.12 -1.81 10.04 -39.59 -0.40 -2.20 16 9 C -0.12 -2.02 9.96 -39.43 -0.39 -2.41 16 10 C 0.08 1.59 5.31 -39.14 -0.21 1.39 16 11 O -0.29 -5.98 10.06 -46.41 -0.47 -6.45 16 12 C 0.04 0.76 2.89 -27.64 -0.08 0.68 16 13 H 0.14 2.32 6.22 -51.93 -0.32 2.00 16 14 C 0.42 10.51 5.78 -10.98 -0.06 10.44 16 15 O -0.57 -16.45 14.73 -12.91 -0.19 -16.64 16 16 N -0.44 -10.99 2.27 -122.19 -0.28 -11.27 16 17 C 0.10 2.22 6.53 59.85 0.39 2.61 16 18 C -0.30 -8.20 9.54 -14.93 -0.14 -8.34 16 19 H 0.10 3.09 7.21 -52.49 -0.38 2.71 16 20 C 0.03 0.71 5.40 -17.46 -0.09 0.62 16 21 N -0.89 -22.51 9.59 55.50 0.53 -21.98 16 22 Si 0.93 20.63 29.56 -169.99 -5.02 15.61 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.08 1.11 6.71 -51.93 -0.35 0.76 16 28 H 0.09 1.80 5.27 -51.93 -0.27 1.52 16 29 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 32 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 33 H 0.02 0.41 3.59 -51.93 -0.19 0.22 16 34 H 0.08 1.81 6.84 -51.93 -0.36 1.46 16 35 H 0.07 1.51 7.04 -51.93 -0.37 1.14 16 36 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 LS Contribution 289.56 15.07 4.36 4.36 Total: -1.00 -32.32 289.56 -7.09 -39.40 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -3.90 Total: 5.12 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -1.80 Total: -1.83 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.25 Total: -33.25 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.98 Total: -29.42 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.32 -7.09 -39.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195143567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.098 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds