Wall clock time and date at job start Mon Mar 30 2020 01:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.70988 * 2 1 4 4 O 1.43177 * 109.70714 * 120.58626 * 2 1 3 5 5 C 1.36115 * 116.68855 * 165.96492 * 4 2 1 6 6 C 1.38705 * 119.38902 * 162.68577 * 5 4 2 7 7 C 1.38199 * 120.06265 * 179.83723 * 6 5 4 8 8 C 1.38258 * 120.10896 * 359.69677 * 7 6 5 9 9 C 1.38189 * 120.11671 * 0.62460 * 8 7 6 10 10 C 1.38708 * 120.06648 * 359.45506 * 9 8 7 11 11 O 1.36103 * 119.40338 * 179.90955 * 10 9 8 12 12 C 1.43163 * 116.71750 * 162.97455 * 11 10 9 13 13 H 1.09000 * 109.70693 * 165.86695 * 12 11 10 14 14 C 1.50704 * 109.73933 * 286.46241 * 12 11 10 15 15 O 1.21296 * 119.99947 * 23.88870 * 14 12 11 16 16 N 1.34776 * 120.00083 * 203.89439 * 14 12 11 17 17 C 1.46498 * 119.99979 * 5.49436 * 16 14 12 18 18 C 1.37101 * 119.99869 * 185.49188 * 16 14 12 19 19 H 1.08001 * 120.00084 * 6.48549 * 18 16 14 20 20 C 1.38956 * 119.99814 * 186.47564 * 18 16 14 21 21 N 1.31413 * 119.99987 * 6.53301 * 20 18 16 22 22 Si 1.86793 * 119.99910 * 186.52862 * 20 18 16 23 23 H 1.48500 * 109.47220 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47200 * 120.00291 * 22 20 18 25 25 H 1.48499 * 109.47435 * 240.00352 * 22 20 18 26 26 H 1.08998 * 109.46696 * 294.89568 * 1 2 3 27 27 H 1.09006 * 109.46682 * 54.88929 * 1 2 3 28 28 H 1.08995 * 109.47103 * 174.88946 * 1 2 3 29 29 H 1.07995 * 119.97156 * 359.85922 * 6 5 4 30 30 H 1.07995 * 119.94150 * 179.97438 * 7 6 5 31 31 H 1.08004 * 119.93817 * 180.37151 * 8 7 6 32 32 H 1.07998 * 119.96862 * 179.72466 * 9 8 7 33 33 H 1.09003 * 109.47188 * 354.27647 * 17 16 14 34 34 H 1.08997 * 109.47312 * 114.28306 * 17 16 14 35 35 H 1.09004 * 109.47356 * 234.27839 * 17 16 14 36 36 H 0.96999 * 119.99904 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 8 2.0129 -0.6859 1.1604 5 6 3.3297 -1.0302 1.1633 6 6 3.9447 -1.3589 2.3623 7 6 5.2802 -1.7138 2.3809 8 6 6.0051 -1.7483 1.2041 9 6 5.4002 -1.4155 0.0070 10 6 4.0605 -1.0568 -0.0185 11 8 3.4788 -0.7298 -1.2047 12 6 2.0477 -0.7361 -1.2431 13 1 1.7019 -0.2267 -2.1426 14 6 1.5447 -2.1568 -1.2386 15 8 2.2359 -3.0434 -0.7832 16 7 0.3270 -2.4421 -1.7408 17 6 -0.4576 -1.3946 -2.3992 18 6 -0.1775 -3.7125 -1.6354 19 1 0.3518 -4.4578 -1.0602 20 6 -1.3700 -4.0413 -2.2685 21 7 -1.9478 -3.1762 -3.0715 22 14 -2.1516 -5.7128 -1.9782 23 1 -1.3099 -6.4964 -1.0386 24 1 -3.5056 -5.5317 -1.3958 25 1 -2.2610 -6.4390 -3.2688 26 1 -0.3633 0.4326 0.9322 27 1 -0.3633 0.5911 -0.8407 28 1 -0.3633 -1.0235 -0.0915 29 1 3.3793 -1.3378 3.2822 30 1 5.7572 -1.9690 3.3156 31 1 7.0471 -2.0319 1.2210 32 1 5.9699 -1.4390 -0.9102 33 1 0.0557 -0.4384 -2.2981 34 1 -0.5714 -1.6360 -3.4560 35 1 -1.4410 -1.3302 -1.9334 36 1 -2.7800 -3.4058 -3.5137 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195143567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:10 Heat of formation + Delta-G solvation = -69.699794 kcal Electronic energy + Delta-G solvation = -22586.440822 eV Core-core repulsion = 19229.966975 eV Total energy + Delta-G solvation = -3356.473846 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.65628 -40.22121 -38.50497 -38.25121 -36.76781 -34.49995 -33.07489 -31.61032 -30.06035 -28.80000 -28.18051 -26.09833 -24.57990 -23.59387 -22.89370 -20.27148 -19.80343 -19.14179 -18.80587 -17.81395 -17.60685 -16.76723 -16.44796 -15.93615 -15.88254 -15.72534 -15.31986 -14.97793 -14.80676 -14.68060 -14.21867 -13.75628 -13.62367 -13.44728 -13.25606 -12.90123 -12.83967 -12.75498 -12.59759 -12.44725 -12.17521 -12.13115 -11.90967 -11.29746 -11.09267 -10.49217 -9.92109 -9.54432 -8.92018 -8.30480 -5.97458 0.37717 0.44059 1.29013 1.37620 1.50508 1.73813 1.98265 2.22258 2.33607 2.80723 2.87883 3.02166 3.24941 3.66867 3.70729 3.78985 4.02815 4.04829 4.17416 4.33779 4.46303 4.49279 4.56826 4.67503 4.77282 4.96851 5.12334 5.17087 5.26175 5.29924 5.38697 5.47781 5.54169 5.78220 5.93492 5.96031 6.38044 6.46911 7.08794 7.35937 7.89207 8.60037 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.025443 B = 0.005935 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.248967 B = 4717.030198 C = 5083.020989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.067 3.933 3 H 0.118 0.882 4 O -0.322 6.322 5 C 0.040 3.960 6 C -0.135 4.135 7 C -0.115 4.115 8 C -0.117 4.117 9 C -0.132 4.132 10 C 0.041 3.959 11 O -0.303 6.303 12 C 0.042 3.958 13 H 0.166 0.834 14 C 0.411 3.589 15 O -0.623 6.623 16 N -0.446 5.446 17 C 0.115 3.885 18 C -0.340 4.340 19 H 0.068 0.932 20 C 0.003 3.997 21 N -0.889 5.889 22 Si 0.990 3.010 23 H -0.282 1.282 24 H -0.263 1.263 25 H -0.270 1.270 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.050 0.950 29 H 0.141 0.859 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.139 0.861 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.555 9.534 5.632 12.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.010 3.990 3 H 0.136 0.864 4 O -0.237 6.237 5 C -0.005 4.005 6 C -0.154 4.154 7 C -0.133 4.133 8 C -0.135 4.135 9 C -0.151 4.151 10 C -0.004 4.004 11 O -0.216 6.216 12 C -0.018 4.018 13 H 0.183 0.817 14 C 0.200 3.800 15 O -0.510 6.510 16 N -0.164 5.164 17 C -0.027 4.027 18 C -0.467 4.467 19 H 0.086 0.914 20 C -0.199 4.199 21 N -0.528 5.528 22 Si 0.813 3.187 23 H -0.207 1.207 24 H -0.188 1.188 25 H -0.195 1.195 26 H 0.106 0.894 27 H 0.135 0.865 28 H 0.069 0.931 29 H 0.159 0.841 30 H 0.184 0.816 31 H 0.183 0.817 32 H 0.157 0.843 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.613 9.145 5.664 12.627 hybrid contribution -0.789 -1.065 -0.375 1.377 sum 5.824 8.081 5.288 11.277 Atomic orbital electron populations 1.22245 0.89634 1.03863 1.05459 1.23299 0.98077 0.95397 0.82250 0.86438 1.86230 1.22397 1.73786 1.41327 1.19269 0.83926 1.02762 0.94531 1.20754 0.96070 1.03321 0.95250 1.21281 0.92298 0.99689 1.00050 1.21275 1.01648 0.99824 0.90712 1.20748 0.91735 1.01791 1.00827 1.19233 0.94613 1.02553 0.83959 1.86258 1.19825 1.84115 1.31448 1.23342 0.80131 0.94832 1.03484 0.81707 1.20758 0.82869 0.91120 0.85281 1.90512 1.57562 1.49547 1.53388 1.43902 1.13884 1.10109 1.48550 1.22048 0.94807 0.87335 0.98527 1.19683 1.06304 0.89009 1.31749 0.91371 1.25967 0.96426 1.02895 0.94639 1.70182 1.19189 1.35750 1.27714 0.84931 0.78145 0.77327 0.78268 1.20675 1.18802 1.19510 0.89351 0.86521 0.93111 0.84101 0.81592 0.81662 0.84339 0.91365 0.92098 0.91978 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.68 7.92 71.98 0.57 -4.11 16 2 C 0.07 2.25 3.34 30.75 0.10 2.36 16 3 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 4 O -0.32 -13.07 9.71 -82.63 -0.80 -13.87 16 5 C 0.04 1.59 5.89 22.56 0.13 1.73 16 6 C -0.14 -4.46 9.96 22.37 0.22 -4.23 16 7 C -0.12 -3.03 10.04 22.27 0.22 -2.81 16 8 C -0.12 -3.11 10.04 22.26 0.22 -2.88 16 9 C -0.13 -4.47 9.96 22.37 0.22 -4.24 16 10 C 0.04 1.66 5.31 22.56 0.12 1.78 16 11 O -0.30 -12.61 10.06 -69.53 -0.70 -13.31 16 12 C 0.04 1.66 2.89 30.01 0.09 1.75 16 13 H 0.17 5.32 6.22 -2.39 -0.01 5.30 16 14 C 0.41 21.18 5.78 87.66 0.51 21.69 16 15 O -0.62 -37.90 14.73 14.56 0.21 -37.68 16 16 N -0.45 -23.05 2.27 -658.87 -1.50 -24.55 16 17 C 0.11 4.84 6.53 127.77 0.83 5.67 16 18 C -0.34 -19.56 9.54 84.04 0.80 -18.76 16 19 H 0.07 4.33 7.21 -2.91 -0.02 4.31 16 20 C 0.00 0.13 5.40 84.93 0.46 0.59 16 21 N -0.89 -44.86 9.59 21.67 0.21 -44.65 16 22 Si 0.99 42.59 29.56 68.60 2.03 44.62 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 26 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.12 2.69 6.71 -2.38 -0.02 2.67 16 28 H 0.05 1.99 5.27 -2.39 -0.01 1.98 16 29 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 30 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 31 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 33 H 0.07 2.21 3.59 -2.39 -0.01 2.20 16 34 H 0.06 2.78 6.84 -2.39 -0.02 2.77 16 35 H 0.06 2.69 7.04 -2.39 -0.02 2.67 16 36 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 Total: -1.00 -74.79 289.56 5.07 -69.72 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 1.11 Total: 21.21 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 4.51 Total: -1.49 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -1.29 Total: -69.20 kcal Atomic # 8 Polarization: -63.57 SS G_CDS: -1.29 Total: -64.86 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -74.79 5.07 -69.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195143567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.018 kcal (2) G-P(sol) polarization free energy of solvation -74.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds