Wall clock time and date at job start Mon Mar 30 2020 01:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42893 * 109.47199 * 2 1 4 4 C 1.35959 * 117.00326 * 179.97438 * 3 2 1 5 5 C 1.38081 * 119.99561 * 0.25546 * 4 3 2 6 6 C 1.39981 * 119.83464 * 180.26940 * 5 4 3 7 7 C 1.46965 * 120.07756 * 179.74363 * 6 5 4 8 8 C 1.35023 * 119.99921 * 179.72802 * 7 6 5 9 9 C 1.46255 * 119.99906 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00020 * 179.97438 * 9 8 7 11 11 O 1.21724 * 120.00411 * 0.02562 * 9 8 7 12 12 C 1.40025 * 119.84429 * 359.47480 * 6 5 4 13 13 C 1.37657 * 120.00029 * 0.27798 * 12 6 5 14 14 C 1.39061 * 120.15602 * 359.96908 * 13 12 6 15 15 O 1.35619 * 119.91467 * 180.02562 * 14 13 12 16 16 C 1.34759 * 117.00154 * 354.39086 * 15 14 13 17 17 H 1.07997 * 120.00146 * 5.05624 * 16 15 14 18 18 C 1.38711 * 120.00091 * 185.06608 * 16 15 14 19 19 N 1.31517 * 119.99375 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00137 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47518 * 89.99481 * 20 18 16 22 22 H 1.48501 * 109.46996 * 209.99504 * 20 18 16 23 23 H 1.48497 * 109.46938 * 329.99084 * 20 18 16 24 24 H 1.08995 * 109.47135 * 299.99805 * 1 2 3 25 25 H 1.09007 * 109.47130 * 60.00241 * 1 2 3 26 26 H 1.09002 * 109.47010 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47364 * 239.99808 * 2 1 3 28 28 H 1.09007 * 109.46684 * 120.00053 * 2 1 3 29 29 H 1.07997 * 120.08375 * 0.02617 * 5 4 3 30 30 H 1.08004 * 119.99809 * 359.73586 * 7 6 5 31 31 H 1.07996 * 120.00004 * 0.02562 * 8 7 6 32 32 H 0.97000 * 120.00225 * 180.02562 * 10 9 8 33 33 H 0.97001 * 120.00211 * 359.73052 * 10 9 8 34 34 H 1.07994 * 120.00470 * 180.24795 * 12 6 5 35 35 H 1.07991 * 119.91888 * 180.02562 * 13 12 6 36 36 H 0.97003 * 119.99767 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3542 1.5254 0.0005 5 6 4.1953 0.4303 -0.0043 6 6 5.5825 0.6177 0.0020 7 6 6.4826 -0.5441 0.0026 8 6 7.8204 -0.3615 0.0031 9 6 8.7162 -1.5177 0.0032 10 7 10.0516 -1.3355 0.0032 11 8 8.2557 -2.6444 0.0023 12 6 6.1105 1.9146 0.0020 13 6 5.2659 3.0016 0.0016 14 6 3.8878 2.8155 0.0006 15 8 3.0602 3.8899 -0.0003 16 6 3.6335 5.1038 0.1172 17 1 4.7096 5.1944 0.1244 18 6 2.8414 6.2370 0.2292 19 7 1.5309 6.1266 0.2202 20 14 3.6360 7.9196 0.3928 21 1 3.8448 8.5019 -0.9571 22 1 2.7501 8.8105 1.1845 23 1 4.9447 7.7841 1.0814 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8901 29 1 3.7839 -0.5682 -0.0089 30 1 6.0739 -1.5438 0.0025 31 1 8.2290 0.6382 0.0035 32 1 10.6457 -2.1022 0.0028 33 1 10.4186 -0.4376 -0.0008 34 1 7.1803 2.0621 0.0028 35 1 5.6745 4.0012 0.0012 36 1 0.9769 6.9191 0.2981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226361127.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:33 Heat of formation + Delta-G solvation = -67.942702 kcal Electronic energy + Delta-G solvation = -20420.527621 eV Core-core repulsion = 17064.129969 eV Total energy + Delta-G solvation = -3356.397653 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.78123 -39.18048 -37.79032 -36.60334 -33.56055 -33.08179 -32.22734 -31.32152 -29.58461 -28.01082 -25.62523 -23.82988 -23.31391 -21.46014 -20.91093 -19.25082 -18.20061 -17.80982 -17.24271 -16.60238 -15.99529 -15.63271 -15.18985 -14.73271 -14.44437 -14.22833 -14.01534 -13.82477 -13.63306 -13.26326 -12.45928 -12.41009 -12.32940 -12.11001 -11.68112 -11.58703 -11.34540 -11.12922 -11.03596 -10.66137 -10.48461 -10.44868 -9.92701 -9.68252 -9.59274 -9.40662 -8.85465 -7.99109 -6.92517 -6.63088 -4.14281 1.00748 2.10366 2.52863 3.03927 3.05046 3.09941 3.57659 3.70758 3.81152 3.81953 4.45759 4.88712 4.99259 5.06884 5.20667 5.22622 5.31513 5.49618 5.58520 5.59093 5.69561 5.76371 5.97748 6.07102 6.20281 6.32537 6.38697 6.44489 6.56380 6.78775 6.85491 6.99249 7.07604 7.24484 7.43157 7.47111 7.77549 8.09265 8.38171 8.80008 9.48980 10.52706 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.014572 B = 0.004610 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.032871 B = 6072.335326 C = 7968.799759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.301 6.301 4 C 0.055 3.945 5 C -0.137 4.137 6 C -0.167 4.167 7 C 0.037 3.963 8 C -0.283 4.283 9 C 0.557 3.443 10 N -0.859 5.859 11 O -0.565 6.565 12 C -0.059 4.059 13 C -0.225 4.225 14 C 0.148 3.852 15 O -0.147 6.147 16 C -0.391 4.391 17 H 0.098 0.902 18 C 0.042 3.958 19 N -0.844 5.844 20 Si 0.945 3.055 21 H -0.271 1.271 22 H -0.275 1.275 23 H -0.265 1.265 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.397 0.603 33 H 0.400 0.600 34 H 0.116 0.884 35 H 0.137 0.863 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.210 -7.963 -0.190 11.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.216 6.216 4 C 0.010 3.990 5 C -0.156 4.156 6 C -0.169 4.169 7 C 0.017 3.983 8 C -0.304 4.304 9 C 0.348 3.652 10 N -0.421 5.421 11 O -0.446 6.446 12 C -0.078 4.078 13 C -0.245 4.245 14 C 0.091 3.909 15 O -0.047 6.047 16 C -0.467 4.467 17 H 0.115 0.885 18 C -0.165 4.165 19 N -0.476 5.476 20 Si 0.769 3.231 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.189 1.189 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.227 0.773 33 H 0.228 0.772 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.086 -8.222 -0.185 10.856 hybrid contribution 1.046 0.783 0.064 1.308 sum 8.132 -7.439 -0.121 11.022 Atomic orbital electron populations 1.21730 0.93339 1.01923 1.03705 1.22632 0.95588 0.83360 1.00482 1.86232 1.18545 1.27167 1.89644 1.18000 0.82572 0.91285 1.07124 1.20887 0.92854 0.96666 1.05229 1.18174 0.91898 0.92314 1.14492 1.22261 0.92641 0.97558 0.85836 1.22468 0.94126 0.97487 1.16339 1.18418 0.82593 0.89515 0.74717 1.43743 1.07373 1.12019 1.78954 1.90810 1.76602 1.25707 1.51524 1.20928 0.98577 0.91266 0.97000 1.20832 0.91650 0.99800 1.12200 1.18888 0.89583 0.86336 0.96044 1.83990 1.33115 1.12439 1.75186 1.21522 0.93112 0.80375 1.51646 0.88517 1.25412 0.95397 0.99635 0.96081 1.70048 1.03600 1.30887 1.43089 0.85649 0.78920 0.79674 0.78883 1.19624 1.20039 1.18916 0.91552 0.91584 0.91076 0.92825 0.92804 0.85888 0.85966 0.85719 0.77340 0.77159 0.86606 0.84510 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 37.16 0.38 -1.59 16 2 C 0.06 0.85 5.46 37.16 0.20 1.05 16 3 O -0.30 -6.42 9.92 -34.22 -0.34 -6.76 16 4 C 0.06 1.19 6.70 -39.13 -0.26 0.92 16 5 C -0.14 -2.48 8.77 -38.99 -0.34 -2.82 16 6 C -0.17 -2.89 5.87 -105.04 -0.62 -3.51 16 7 C 0.04 0.57 9.45 -37.19 -0.35 0.21 16 8 C -0.28 -3.86 9.41 -37.51 -0.35 -4.21 16 9 C 0.56 7.73 8.01 -13.04 -0.10 7.62 16 10 N -0.86 -7.85 8.87 30.16 0.27 -7.58 16 11 O -0.57 -10.06 17.07 5.17 0.09 -9.97 16 12 C -0.06 -1.04 9.40 -39.12 -0.37 -1.40 16 13 C -0.23 -4.62 9.14 -39.49 -0.36 -4.99 16 14 C 0.15 3.52 6.67 -38.76 -0.26 3.26 16 15 O -0.15 -4.09 9.52 -13.96 -0.13 -4.22 16 16 C -0.39 -10.43 9.48 30.91 0.29 -10.14 16 17 H 0.10 2.33 5.18 -52.49 -0.27 2.06 16 18 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 19 N -0.84 -23.87 13.67 55.48 0.76 -23.11 16 20 Si 0.94 19.40 29.55 -169.99 -5.02 14.38 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.74 7.65 -51.93 -0.40 0.35 16 28 H 0.05 0.75 7.67 -51.93 -0.40 0.35 16 29 H 0.12 1.89 6.28 -52.49 -0.33 1.56 16 30 H 0.12 1.86 7.52 -52.48 -0.39 1.46 16 31 H 0.13 1.45 6.06 -52.49 -0.32 1.13 16 32 H 0.40 3.07 8.93 -40.82 -0.36 2.71 16 33 H 0.40 2.49 8.81 -40.82 -0.36 2.13 16 34 H 0.12 1.65 6.15 -52.49 -0.32 1.32 16 35 H 0.14 2.72 5.62 -52.49 -0.29 2.43 16 36 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 316.66 15.07 4.77 4.77 Total: -1.00 -32.90 316.66 -5.70 -38.60 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -3.85 Total: 8.50 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -2.24 Total: -14.60 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 1.03 Total: -30.69 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.38 Total: -20.96 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.90 -5.70 -38.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226361127.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.343 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds