Wall clock time and date at job start Mon Mar 30 2020 01:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42893 * 109.47199 * 2 1 4 4 C 1.35959 * 117.00326 * 179.97438 * 3 2 1 5 5 C 1.38081 * 119.99561 * 0.25546 * 4 3 2 6 6 C 1.39981 * 119.83464 * 180.26940 * 5 4 3 7 7 C 1.46965 * 120.07756 * 179.74363 * 6 5 4 8 8 C 1.35023 * 119.99921 * 179.72802 * 7 6 5 9 9 C 1.46255 * 119.99906 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00020 * 179.97438 * 9 8 7 11 11 O 1.21724 * 120.00411 * 0.02562 * 9 8 7 12 12 C 1.40025 * 119.84429 * 359.47480 * 6 5 4 13 13 C 1.37657 * 120.00029 * 0.27798 * 12 6 5 14 14 C 1.39061 * 120.15602 * 359.96908 * 13 12 6 15 15 O 1.35619 * 119.91467 * 180.02562 * 14 13 12 16 16 C 1.34759 * 117.00154 * 354.39086 * 15 14 13 17 17 H 1.07997 * 120.00146 * 5.05624 * 16 15 14 18 18 C 1.38711 * 120.00091 * 185.06608 * 16 15 14 19 19 N 1.31517 * 119.99375 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00137 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47518 * 89.99481 * 20 18 16 22 22 H 1.48501 * 109.46996 * 209.99504 * 20 18 16 23 23 H 1.48497 * 109.46938 * 329.99084 * 20 18 16 24 24 H 1.08995 * 109.47135 * 299.99805 * 1 2 3 25 25 H 1.09007 * 109.47130 * 60.00241 * 1 2 3 26 26 H 1.09002 * 109.47010 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47364 * 239.99808 * 2 1 3 28 28 H 1.09007 * 109.46684 * 120.00053 * 2 1 3 29 29 H 1.07997 * 120.08375 * 0.02617 * 5 4 3 30 30 H 1.08004 * 119.99809 * 359.73586 * 7 6 5 31 31 H 1.07996 * 120.00004 * 0.02562 * 8 7 6 32 32 H 0.97000 * 120.00225 * 180.02562 * 10 9 8 33 33 H 0.97001 * 120.00211 * 359.73052 * 10 9 8 34 34 H 1.07994 * 120.00470 * 180.24795 * 12 6 5 35 35 H 1.07991 * 119.91888 * 180.02562 * 13 12 6 36 36 H 0.97003 * 119.99767 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3542 1.5254 0.0005 5 6 4.1953 0.4303 -0.0043 6 6 5.5825 0.6177 0.0020 7 6 6.4826 -0.5441 0.0026 8 6 7.8204 -0.3615 0.0031 9 6 8.7162 -1.5177 0.0032 10 7 10.0516 -1.3355 0.0032 11 8 8.2557 -2.6444 0.0023 12 6 6.1105 1.9146 0.0020 13 6 5.2659 3.0016 0.0016 14 6 3.8878 2.8155 0.0006 15 8 3.0602 3.8899 -0.0003 16 6 3.6335 5.1038 0.1172 17 1 4.7096 5.1944 0.1244 18 6 2.8414 6.2370 0.2292 19 7 1.5309 6.1266 0.2202 20 14 3.6360 7.9196 0.3928 21 1 3.8448 8.5019 -0.9571 22 1 2.7501 8.8105 1.1845 23 1 4.9447 7.7841 1.0814 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8901 29 1 3.7839 -0.5682 -0.0089 30 1 6.0739 -1.5438 0.0025 31 1 8.2290 0.6382 0.0035 32 1 10.6457 -2.1022 0.0028 33 1 10.4186 -0.4376 -0.0008 34 1 7.1803 2.0621 0.0028 35 1 5.6745 4.0012 0.0012 36 1 0.9769 6.9191 0.2981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226361127.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:32 Heat of formation + Delta-G solvation = -92.414496 kcal Electronic energy + Delta-G solvation = -20421.588798 eV Core-core repulsion = 17064.129969 eV Total energy + Delta-G solvation = -3357.458829 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.33553 -40.34966 -39.40309 -38.12055 -34.69839 -34.52049 -33.84711 -32.56634 -31.08027 -29.50045 -27.39430 -25.18922 -24.66124 -22.81249 -22.35379 -20.44920 -19.90724 -19.36281 -18.35719 -17.85127 -17.37320 -17.01496 -16.72848 -16.32504 -15.60410 -15.57835 -15.53950 -15.46624 -14.91853 -14.79559 -13.89723 -13.84285 -13.65465 -13.42621 -13.13802 -13.00512 -12.75287 -12.68312 -12.47083 -12.13875 -11.93079 -11.71457 -11.34105 -11.08594 -10.98031 -10.65639 -10.44551 -9.47560 -8.53087 -8.46873 -6.11440 -0.30589 0.54743 1.11792 1.37388 1.48127 1.55515 2.17522 2.38027 2.43593 2.75860 2.86920 3.14795 3.35854 3.85435 3.92716 4.07174 4.11240 4.19100 4.33518 4.38135 4.41936 4.50116 4.54170 4.84927 4.91395 4.93710 5.09107 5.09884 5.23482 5.29738 5.46088 5.52049 5.77803 5.92841 5.97098 5.98379 6.55705 6.61995 6.95636 7.41652 7.76097 8.74908 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.014572 B = 0.004610 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.032871 B = 6072.335326 C = 7968.799759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.340 6.340 4 C 0.041 3.959 5 C -0.136 4.136 6 C -0.133 4.133 7 C 0.010 3.990 8 C -0.241 4.241 9 C 0.551 3.449 10 N -0.832 5.832 11 O -0.606 6.606 12 C -0.066 4.066 13 C -0.218 4.218 14 C 0.101 3.899 15 O -0.212 6.212 16 C -0.416 4.416 17 H 0.111 0.889 18 C -0.022 4.022 19 N -0.915 5.915 20 Si 1.021 2.979 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.247 1.247 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.111 0.889 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.153 0.847 30 H 0.125 0.875 31 H 0.155 0.845 32 H 0.408 0.592 33 H 0.419 0.581 34 H 0.160 0.840 35 H 0.138 0.862 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.290 -10.055 -0.145 15.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.256 6.256 4 C -0.004 4.004 5 C -0.155 4.155 6 C -0.134 4.134 7 C -0.010 4.010 8 C -0.261 4.261 9 C 0.340 3.660 10 N -0.394 5.394 11 O -0.490 6.490 12 C -0.084 4.084 13 C -0.237 4.237 14 C 0.048 3.952 15 O -0.117 6.117 16 C -0.492 4.492 17 H 0.128 0.872 18 C -0.220 4.220 19 N -0.552 5.552 20 Si 0.840 3.160 21 H -0.187 1.187 22 H -0.199 1.199 23 H -0.171 1.171 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.129 0.871 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.170 0.830 30 H 0.143 0.857 31 H 0.173 0.827 32 H 0.240 0.760 33 H 0.250 0.750 34 H 0.177 0.823 35 H 0.155 0.845 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.272 -10.370 -0.144 15.317 hybrid contribution 0.216 0.806 0.032 0.835 sum 11.488 -9.564 -0.112 14.948 Atomic orbital electron populations 1.21787 0.91978 1.04094 1.02530 1.23036 0.96815 0.81238 1.01996 1.86208 1.18819 1.30750 1.89797 1.18342 0.83340 0.91506 1.07250 1.21255 0.93119 0.97040 1.04089 1.18549 0.91911 0.93178 1.09779 1.22157 0.93106 0.96761 0.89014 1.22864 0.93545 0.98911 1.10823 1.18516 0.83999 0.88744 0.74754 1.43548 1.05902 1.13783 1.76205 1.90818 1.77615 1.27182 1.53369 1.21305 1.00329 0.90160 0.96563 1.21047 0.90843 1.01079 1.10746 1.19587 0.91023 0.86677 0.97868 1.83980 1.34676 1.13365 1.79700 1.22001 0.93908 0.80883 1.52376 0.87225 1.26686 0.95860 1.03834 0.95630 1.70209 1.05537 1.31848 1.47571 0.84553 0.78336 0.73941 0.79182 1.18745 1.19894 1.17061 0.92806 0.92736 0.87091 0.91069 0.91145 0.82955 0.85669 0.82745 0.76043 0.74965 0.82295 0.84459 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 10.28 71.98 0.74 -3.12 16 2 C 0.04 1.33 5.46 71.98 0.39 1.73 16 3 O -0.34 -15.20 9.92 -79.12 -0.78 -15.98 16 4 C 0.04 1.79 6.70 22.56 0.15 1.94 16 5 C -0.14 -4.70 8.77 22.66 0.20 -4.51 16 6 C -0.13 -4.16 5.87 -20.14 -0.12 -4.28 16 7 C 0.01 0.25 9.45 23.82 0.23 0.48 16 8 C -0.24 -5.20 9.41 23.61 0.22 -4.98 16 9 C 0.55 12.57 8.01 86.33 0.69 13.26 16 10 N -0.83 -10.71 8.87 -176.69 -1.57 -12.28 16 11 O -0.61 -19.38 17.07 -4.42 -0.08 -19.45 16 12 C -0.07 -2.08 9.40 22.57 0.21 -1.87 16 13 C -0.22 -8.91 9.14 22.33 0.20 -8.70 16 14 C 0.10 5.00 6.67 22.80 0.15 5.15 16 15 O -0.21 -12.78 9.52 -6.60 -0.06 -12.85 16 16 C -0.42 -23.67 9.48 67.93 0.64 -23.03 16 17 H 0.11 5.54 5.18 -2.91 -0.02 5.52 16 18 C -0.02 -1.21 5.49 84.85 0.47 -0.75 16 19 N -0.91 -56.03 13.67 21.62 0.30 -55.74 16 20 Si 1.02 41.53 29.55 68.60 2.03 43.56 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 23 H -0.25 -9.13 7.11 99.48 0.71 -8.43 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.07 1.88 7.65 -2.39 -0.02 1.87 16 28 H 0.07 1.88 7.67 -2.38 -0.02 1.86 16 29 H 0.15 4.27 6.28 -2.91 -0.02 4.25 16 30 H 0.13 3.32 7.52 -2.91 -0.02 3.30 16 31 H 0.16 2.44 6.06 -2.91 -0.02 2.42 16 32 H 0.41 4.31 8.93 -92.71 -0.83 3.48 16 33 H 0.42 2.63 8.81 -92.71 -0.82 1.81 16 34 H 0.16 3.59 6.15 -2.91 -0.02 3.57 16 35 H 0.14 5.49 5.62 -2.92 -0.02 5.47 16 36 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -79.87 316.66 3.52 -76.35 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.50 Total: 25.07 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 4.18 Total: -28.68 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: -1.27 Total: -68.02 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -0.92 Total: -48.28 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -79.87 3.52 -76.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226361127.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.067 kcal (2) G-P(sol) polarization free energy of solvation -79.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds