Wall clock time and date at job start Mon Mar 30 2020 02:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 N 1.41600 * 114.00222 * 2 1 4 4 C 1.46496 * 120.00041 * 270.00131 * 3 2 1 5 5 C 1.34776 * 120.00140 * 89.99374 * 3 2 1 6 6 O 1.21720 * 120.00236 * 179.97438 * 5 3 2 7 7 C 1.46254 * 119.99839 * 0.02562 * 5 3 2 8 8 C 1.35022 * 120.00088 * 173.22269 * 7 5 3 9 9 C 1.46965 * 119.99838 * 348.50068 * 8 7 5 10 10 C 1.40019 * 120.10020 * 316.62705 * 9 8 7 11 11 C 1.37596 * 119.89767 * 179.78764 * 10 9 8 12 12 C 1.39182 * 120.09892 * 0.48947 * 11 10 9 13 13 O 1.35567 * 119.90007 * 179.76560 * 12 11 10 14 14 C 1.34783 * 117.00147 * 174.34732 * 13 12 11 15 15 H 1.07994 * 120.00235 * 5.05656 * 14 13 12 16 16 C 1.38718 * 119.99820 * 185.05925 * 14 13 12 17 17 N 1.31511 * 120.00124 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99931 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46867 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47521 * 119.99424 * 18 16 14 21 21 H 1.48500 * 109.47207 * 239.99817 * 18 16 14 22 22 C 1.39174 * 120.20292 * 359.74237 * 12 11 10 23 23 C 1.37597 * 120.10120 * 0.02562 * 22 12 11 24 24 H 1.09009 * 109.47086 * 60.00070 * 1 2 3 25 25 H 1.09000 * 109.47458 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47763 * 300.00188 * 1 2 3 27 27 H 1.09000 * 109.47479 * 269.99722 * 4 3 2 28 28 H 1.09002 * 109.47146 * 29.99487 * 4 3 2 29 29 H 1.08999 * 109.46985 * 149.99512 * 4 3 2 30 30 H 1.08006 * 120.00193 * 352.94196 * 7 5 3 31 31 H 1.08001 * 120.00061 * 168.50868 * 8 7 5 32 32 H 1.08000 * 120.05463 * 359.97438 * 10 9 8 33 33 H 1.08001 * 119.95344 * 180.23445 * 11 10 9 34 34 H 0.97003 * 119.99935 * 180.02562 * 17 16 14 35 35 H 1.07996 * 119.95014 * 179.97438 * 22 12 11 36 36 H 1.08002 * 120.05344 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3029 1.9627 -1.2687 5 6 2.2789 1.9092 1.1672 6 8 2.7745 3.0210 1.1672 7 6 1.9819 1.2410 2.4338 8 6 2.3796 1.7953 3.5990 9 6 3.3203 2.9243 3.5923 10 6 4.4344 2.9051 2.7444 11 6 5.3101 3.9664 2.7384 12 6 5.0953 5.0533 3.5808 13 8 5.9633 6.0947 3.5750 14 6 5.6385 7.1662 4.3254 15 1 4.7644 7.1369 4.9589 16 6 6.4270 8.3068 4.2837 17 7 7.4916 8.3424 3.5125 18 14 5.9773 9.7916 5.3241 19 1 4.7442 9.4985 6.0981 20 1 7.0893 10.0953 6.2603 21 1 5.7403 10.9616 4.4408 22 6 3.9920 5.0746 4.4288 23 6 3.1084 4.0199 4.4382 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.3156 1.7107 -1.5834 28 1 1.5939 1.6335 -2.0284 29 1 2.2208 3.0418 -1.1383 30 1 1.4404 0.3065 2.4374 31 1 2.0065 1.4087 4.5359 32 1 4.6045 2.0600 2.0939 33 1 6.1676 3.9542 2.0820 34 1 8.0432 9.1398 3.4837 35 1 3.8295 5.9199 5.0811 36 1 2.2522 4.0374 5.0963 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229832112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:57 Heat of formation + Delta-G solvation = 8.058601 kcal Electronic energy + Delta-G solvation = -20862.409132 eV Core-core repulsion = 17509.307143 eV Total energy + Delta-G solvation = -3353.101989 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.89373 -38.79158 -37.50596 -36.34333 -33.26658 -32.78459 -32.12927 -30.11991 -28.57099 -27.39494 -26.28366 -25.32068 -22.67290 -21.75604 -20.84155 -19.50352 -17.95488 -17.50801 -16.91669 -16.47686 -16.12102 -15.06835 -14.59317 -14.46290 -14.36222 -14.26186 -13.74230 -13.51330 -13.40810 -13.20431 -12.86956 -12.71919 -12.41584 -12.20822 -11.99882 -11.69658 -11.39315 -11.03867 -10.78451 -10.68038 -10.58247 -10.40056 -9.55774 -9.43645 -9.17165 -8.97237 -8.69835 -7.93425 -6.87404 -6.45891 -4.01547 1.19514 1.88081 2.42410 2.67425 3.13593 3.14903 3.20197 3.49457 3.97134 4.11042 4.69666 4.94553 5.00063 5.09763 5.12938 5.19735 5.27365 5.33401 5.36335 5.41631 5.62740 5.71249 5.74423 5.85371 6.25282 6.32138 6.35948 6.47381 6.59577 6.79022 7.03359 7.12771 7.35803 7.43044 7.50239 7.51046 7.91975 8.00931 8.30442 8.99833 9.71745 10.71987 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.034184 B = 0.003690 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.903529 B = 7586.914169 C = 7922.604092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.145 6.145 3 N -0.487 5.487 4 C 0.087 3.913 5 C 0.550 3.450 6 O -0.493 6.493 7 C -0.263 4.263 8 C 0.029 3.971 9 C -0.193 4.193 10 C 0.009 3.991 11 C -0.202 4.202 12 C 0.172 3.828 13 O -0.172 6.172 14 C -0.390 4.390 15 H 0.095 0.905 16 C 0.039 3.961 17 N -0.859 5.859 18 Si 0.942 3.058 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.250 4.250 23 C -0.041 4.041 24 H 0.050 0.950 25 H 0.103 0.897 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.270 0.730 35 H 0.126 0.874 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.331 -14.250 -4.349 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 O -0.149 6.149 3 N -0.268 5.268 4 C -0.053 4.053 5 C 0.344 3.656 6 O -0.368 6.368 7 C -0.284 4.284 8 C 0.010 3.990 9 C -0.194 4.194 10 C -0.009 4.009 11 C -0.221 4.221 12 C 0.117 3.883 13 O -0.075 6.075 14 C -0.466 4.466 15 H 0.112 0.888 16 C -0.166 4.166 17 N -0.494 5.494 18 Si 0.767 3.233 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.270 4.270 23 C -0.059 4.059 24 H 0.068 0.932 25 H 0.121 0.879 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.120 0.880 33 H 0.133 0.867 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.520 -13.578 -4.539 19.019 hybrid contribution -0.768 0.571 0.311 1.006 sum -13.287 -13.006 -4.228 19.068 Atomic orbital electron populations 1.23362 0.82216 1.03516 1.01434 1.90619 1.19658 1.07915 1.96757 1.50168 1.59874 1.09841 1.06944 1.21829 1.01242 0.98297 0.83949 1.18699 0.78037 0.85360 0.83548 1.91053 1.42396 1.18382 1.85003 1.22552 1.11008 1.03008 0.91802 1.22371 0.89053 0.91101 0.96501 1.18322 0.98894 0.97241 1.04914 1.20483 0.91813 0.96024 0.92617 1.20020 1.03374 0.94702 1.04002 1.19532 0.88324 0.88525 0.91956 1.83907 1.40740 1.22081 1.60735 1.21452 1.12503 0.90277 1.22359 0.88808 1.25334 0.95422 0.98304 0.97533 1.70036 1.14070 1.29124 1.36128 0.85626 0.78729 0.79994 0.78964 1.19025 1.20109 1.20107 1.20959 0.98603 1.01494 1.05898 1.20746 0.96849 0.92693 0.95607 0.93155 0.87879 0.92696 0.91804 0.91181 0.89323 0.85772 0.85874 0.87988 0.86731 0.91991 0.85601 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 11.27 101.05 1.14 1.08 16 2 O -0.15 -1.64 10.50 -11.47 -0.12 -1.76 16 3 N -0.49 -6.46 3.36 -68.56 -0.23 -6.69 16 4 C 0.09 0.97 10.82 59.84 0.65 1.62 16 5 C 0.55 8.74 6.71 -13.04 -0.09 8.65 16 6 O -0.49 -9.69 11.76 5.17 0.06 -9.63 16 7 C -0.26 -3.63 9.45 -37.51 -0.35 -3.98 16 8 C 0.03 0.43 9.80 -37.19 -0.36 0.06 16 9 C -0.19 -3.61 4.54 -105.03 -0.48 -4.09 16 10 C 0.01 0.19 6.59 -39.15 -0.26 -0.07 16 11 C -0.20 -4.66 9.97 -39.47 -0.39 -5.06 16 12 C 0.17 4.38 6.66 -38.88 -0.26 4.12 16 13 O -0.17 -5.08 9.74 0.74 0.01 -5.07 16 14 C -0.39 -11.12 9.48 30.91 0.29 -10.82 16 15 H 0.09 2.48 5.18 -52.49 -0.27 2.21 16 16 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 18 Si 0.94 20.73 29.55 -169.99 -5.02 15.71 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 C -0.25 -5.71 9.14 -39.47 -0.36 -6.08 16 23 C -0.04 -0.79 9.78 -39.15 -0.38 -1.17 16 24 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 25 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 1.08 7.42 -51.93 -0.39 0.70 16 30 H 0.12 1.39 7.31 -52.48 -0.38 1.00 16 31 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.10 1.92 7.01 -52.49 -0.37 1.55 16 33 H 0.11 2.58 8.06 -52.49 -0.42 2.16 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 35 H 0.13 2.84 5.62 -52.49 -0.29 2.55 16 36 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 315.29 15.07 4.75 4.75 Total: -1.00 -33.63 315.29 -4.97 -38.60 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.22 Total: 3.57 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -0.96 Total: -14.76 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.53 Total: -31.42 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.05 Total: -16.46 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.63 -4.97 -38.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229832112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.662 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds