Wall clock time and date at job start Mon Mar 30 2020 02:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 N 1.41600 * 114.00222 * 2 1 4 4 C 1.46496 * 120.00041 * 270.00131 * 3 2 1 5 5 C 1.34776 * 120.00140 * 89.99374 * 3 2 1 6 6 O 1.21720 * 120.00236 * 179.97438 * 5 3 2 7 7 C 1.46254 * 119.99839 * 0.02562 * 5 3 2 8 8 C 1.35022 * 120.00088 * 173.22269 * 7 5 3 9 9 C 1.46965 * 119.99838 * 348.50068 * 8 7 5 10 10 C 1.40019 * 120.10020 * 316.62705 * 9 8 7 11 11 C 1.37596 * 119.89767 * 179.78764 * 10 9 8 12 12 C 1.39182 * 120.09892 * 0.48947 * 11 10 9 13 13 O 1.35567 * 119.90007 * 179.76560 * 12 11 10 14 14 C 1.34783 * 117.00147 * 174.34732 * 13 12 11 15 15 H 1.07994 * 120.00235 * 5.05656 * 14 13 12 16 16 C 1.38718 * 119.99820 * 185.05925 * 14 13 12 17 17 N 1.31511 * 120.00124 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99931 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46867 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47521 * 119.99424 * 18 16 14 21 21 H 1.48500 * 109.47207 * 239.99817 * 18 16 14 22 22 C 1.39174 * 120.20292 * 359.74237 * 12 11 10 23 23 C 1.37597 * 120.10120 * 0.02562 * 22 12 11 24 24 H 1.09009 * 109.47086 * 60.00070 * 1 2 3 25 25 H 1.09000 * 109.47458 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47763 * 300.00188 * 1 2 3 27 27 H 1.09000 * 109.47479 * 269.99722 * 4 3 2 28 28 H 1.09002 * 109.47146 * 29.99487 * 4 3 2 29 29 H 1.08999 * 109.46985 * 149.99512 * 4 3 2 30 30 H 1.08006 * 120.00193 * 352.94196 * 7 5 3 31 31 H 1.08001 * 120.00061 * 168.50868 * 8 7 5 32 32 H 1.08000 * 120.05463 * 359.97438 * 10 9 8 33 33 H 1.08001 * 119.95344 * 180.23445 * 11 10 9 34 34 H 0.97003 * 119.99935 * 180.02562 * 17 16 14 35 35 H 1.07996 * 119.95014 * 179.97438 * 22 12 11 36 36 H 1.08002 * 120.05344 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3029 1.9627 -1.2687 5 6 2.2789 1.9092 1.1672 6 8 2.7745 3.0210 1.1672 7 6 1.9819 1.2410 2.4338 8 6 2.3796 1.7953 3.5990 9 6 3.3203 2.9243 3.5923 10 6 4.4344 2.9051 2.7444 11 6 5.3101 3.9664 2.7384 12 6 5.0953 5.0533 3.5808 13 8 5.9633 6.0947 3.5750 14 6 5.6385 7.1662 4.3254 15 1 4.7644 7.1369 4.9589 16 6 6.4270 8.3068 4.2837 17 7 7.4916 8.3424 3.5125 18 14 5.9773 9.7916 5.3241 19 1 4.7442 9.4985 6.0981 20 1 7.0893 10.0953 6.2603 21 1 5.7403 10.9616 4.4408 22 6 3.9920 5.0746 4.4288 23 6 3.1084 4.0199 4.4382 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.3156 1.7107 -1.5834 28 1 1.5939 1.6335 -2.0284 29 1 2.2208 3.0418 -1.1383 30 1 1.4404 0.3065 2.4374 31 1 2.0065 1.4087 4.5359 32 1 4.6045 2.0600 2.0939 33 1 6.1676 3.9542 2.0820 34 1 8.0432 9.1398 3.4837 35 1 3.8295 5.9199 5.0811 36 1 2.2522 4.0374 5.0963 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229832112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:56 Heat of formation + Delta-G solvation = -14.485211 kcal Electronic energy + Delta-G solvation = -20863.386705 eV Core-core repulsion = 17509.307143 eV Total energy + Delta-G solvation = -3354.079562 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.21309 -40.47845 -38.68744 -37.91037 -34.70394 -34.04620 -33.82960 -31.83179 -30.04140 -28.34128 -27.53555 -27.01475 -24.09103 -23.43594 -22.25623 -20.72715 -19.81399 -19.00991 -18.42217 -17.65815 -17.07779 -16.48510 -16.38845 -16.02420 -15.65208 -15.46376 -15.23639 -14.96500 -14.74244 -14.54478 -14.36275 -13.90677 -13.84304 -13.57219 -13.41602 -13.04308 -12.78813 -12.66301 -12.35875 -12.23234 -12.08534 -11.61258 -11.23761 -10.97860 -10.72591 -10.43706 -10.05796 -9.59111 -8.58857 -8.48460 -6.15667 -0.09447 0.68763 0.97076 1.07648 1.34504 1.45026 1.53870 2.17368 2.28795 2.86697 3.15730 3.20296 3.51560 3.98428 4.09645 4.15788 4.21430 4.36200 4.41928 4.47541 4.51508 4.54563 4.57864 4.75830 4.78130 4.81883 5.03823 5.07987 5.22529 5.23821 5.39054 5.42182 5.66004 5.71596 5.81717 6.02494 6.22999 6.46823 6.95576 7.13373 7.77284 8.74984 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.034184 B = 0.003690 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.903529 B = 7586.914169 C = 7922.604092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 O -0.150 6.150 3 N -0.485 5.485 4 C 0.084 3.916 5 C 0.536 3.464 6 O -0.544 6.544 7 C -0.236 4.236 8 C 0.017 3.983 9 C -0.166 4.166 10 C 0.011 3.989 11 C -0.220 4.220 12 C 0.129 3.871 13 O -0.230 6.230 14 C -0.415 4.415 15 H 0.104 0.896 16 C -0.024 4.024 17 N -0.921 5.921 18 Si 1.023 2.977 19 H -0.250 1.250 20 H -0.266 1.266 21 H -0.269 1.269 22 C -0.258 4.258 23 C -0.043 4.043 24 H 0.057 0.943 25 H 0.136 0.864 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.163 0.837 31 H 0.173 0.827 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.273 0.727 35 H 0.122 0.878 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.159 -17.076 -3.578 24.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 O -0.154 6.154 3 N -0.264 5.264 4 C -0.056 4.056 5 C 0.331 3.669 6 O -0.423 6.423 7 C -0.256 4.256 8 C -0.002 4.002 9 C -0.166 4.166 10 C -0.007 4.007 11 C -0.239 4.239 12 C 0.078 3.922 13 O -0.136 6.136 14 C -0.491 4.491 15 H 0.121 0.879 16 C -0.222 4.222 17 N -0.559 5.559 18 Si 0.841 3.159 19 H -0.173 1.173 20 H -0.191 1.191 21 H -0.194 1.194 22 C -0.277 4.277 23 C -0.061 4.061 24 H 0.075 0.925 25 H 0.153 0.847 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.090 0.910 30 H 0.180 0.820 31 H 0.191 0.809 32 H 0.134 0.866 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.140 0.860 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.409 -16.501 -3.796 23.579 hybrid contribution 0.092 0.922 -0.158 0.940 sum -16.317 -15.579 -3.954 22.904 Atomic orbital electron populations 1.23656 0.79872 1.05735 1.01901 1.90613 1.22000 1.05991 1.96832 1.50073 1.59071 1.10477 1.06829 1.21936 1.02357 0.97360 0.83995 1.19193 0.77660 0.85056 0.85028 1.91052 1.44693 1.20564 1.86036 1.22923 1.09246 1.03135 0.90336 1.22627 0.88902 0.89685 0.99004 1.18865 0.98134 0.97901 1.01746 1.20677 0.91757 0.95380 0.92926 1.20181 1.04052 0.95567 1.04115 1.20006 0.89659 0.88574 0.93920 1.83877 1.43096 1.23562 1.63094 1.21947 1.13312 0.90918 1.22940 0.87866 1.26684 0.95072 1.01471 0.98932 1.70186 1.16066 1.30462 1.39142 0.84483 0.79135 0.75139 0.77117 1.17274 1.19087 1.19372 1.21106 0.98547 1.02652 1.05371 1.21186 0.97220 0.91423 0.96259 0.92457 0.84658 0.92514 0.91703 0.88028 0.90982 0.81985 0.80950 0.86575 0.87935 0.91752 0.86025 0.83137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.15 11.27 113.37 1.28 1.13 16 2 O -0.15 -2.76 10.50 -38.78 -0.41 -3.16 16 3 N -0.49 -11.51 3.36 -489.03 -1.64 -13.15 16 4 C 0.08 1.72 10.82 127.77 1.38 3.11 16 5 C 0.54 15.62 6.71 86.33 0.58 16.20 16 6 O -0.54 -20.96 11.76 -4.41 -0.05 -21.02 16 7 C -0.24 -5.34 9.45 23.61 0.22 -5.12 16 8 C 0.02 0.41 9.80 23.82 0.23 0.64 16 9 C -0.17 -5.79 4.54 -20.13 -0.09 -5.88 16 10 C 0.01 0.44 6.59 22.55 0.15 0.59 16 11 C -0.22 -10.76 9.97 22.34 0.22 -10.53 16 12 C 0.13 7.02 6.66 22.72 0.15 7.17 16 13 O -0.23 -14.70 9.74 -20.25 -0.20 -14.90 16 14 C -0.42 -25.21 9.48 67.93 0.64 -24.57 16 15 H 0.10 5.75 5.18 -2.91 -0.02 5.73 16 16 C -0.02 -1.42 5.49 84.86 0.47 -0.95 16 17 N -0.92 -58.27 13.67 21.62 0.30 -57.97 16 18 Si 1.02 44.00 29.55 68.60 2.03 46.02 16 19 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 22 C -0.26 -12.02 9.14 22.34 0.20 -11.82 16 23 C -0.04 -1.59 9.78 22.55 0.22 -1.36 16 24 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 25 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.61 8.09 -2.39 -0.02 0.59 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.75 7.42 -2.39 -0.02 1.73 16 30 H 0.16 2.52 7.31 -2.91 -0.02 2.50 16 31 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 32 H 0.12 4.29 7.01 -2.91 -0.02 4.27 16 33 H 0.10 5.06 8.06 -2.91 -0.02 5.04 16 34 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 35 H 0.12 5.66 5.62 -2.91 -0.02 5.64 16 36 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -81.09 315.29 6.78 -74.31 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 1.09 Total: 21.27 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 5.66 Total: -31.41 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -1.35 Total: -71.12 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.66 Total: -39.08 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -81.09 6.78 -74.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229832112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.829 kcal (2) G-P(sol) polarization free energy of solvation -81.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds