Wall clock time and date at job start Mon Mar 30 2020 01:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.55821 * 2 1 4 4 C 1.53300 * 109.51089 * 120.12589 * 2 1 3 5 5 N 1.47148 * 108.41473 * 172.24371 * 4 2 1 6 6 S 1.65602 * 120.98114 * 129.42466 * 5 4 2 7 7 O 1.42101 * 104.27740 * 206.06672 * 6 5 4 8 8 O 1.42096 * 104.28045 * 333.92800 * 6 5 4 9 9 C 1.81402 * 104.44815 * 90.00074 * 6 5 4 10 10 C 1.53004 * 109.47062 * 180.02562 * 9 6 5 11 11 C 1.50701 * 109.47090 * 179.97438 * 10 9 6 12 12 H 1.07994 * 119.99878 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99854 * 179.97438 * 11 10 9 14 14 N 1.31523 * 120.00111 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99953 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47375 * 89.99846 * 15 13 11 17 17 H 1.48501 * 109.46952 * 210.00062 * 15 13 11 18 18 H 1.48504 * 109.46799 * 329.99459 * 15 13 11 19 19 C 1.47156 * 118.03649 * 309.44697 * 5 4 2 20 20 H 1.08998 * 109.67987 * 170.26585 * 19 5 4 21 21 C 1.53002 * 109.67841 * 290.81058 * 19 5 4 22 22 C 1.53286 * 108.38530 * 50.53434 * 19 5 4 23 23 O 1.42961 * 109.22305 * 307.70098 * 22 19 5 24 24 H 1.09006 * 109.47050 * 299.87959 * 1 2 3 25 25 H 1.09001 * 109.46833 * 59.87337 * 1 2 3 26 26 H 1.08995 * 109.47317 * 179.87626 * 1 2 3 27 27 H 1.09002 * 109.68260 * 52.49979 * 4 2 1 28 28 H 1.08999 * 109.68056 * 291.98411 * 4 2 1 29 29 H 1.08998 * 109.47158 * 299.99837 * 9 6 5 30 30 H 1.08996 * 109.47704 * 60.00106 * 9 6 5 31 31 H 1.09004 * 109.46460 * 299.99652 * 10 9 6 32 32 H 1.08993 * 109.47423 * 59.99492 * 10 9 6 33 33 H 0.96994 * 119.99571 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.47035 * 60.00056 * 21 19 5 35 35 H 1.09005 * 109.47313 * 179.97438 * 21 19 5 36 36 H 1.08998 * 109.47247 * 300.00394 * 21 19 5 37 37 H 1.09003 * 109.51258 * 67.62584 * 22 19 5 38 38 H 1.09004 * 109.51284 * 187.77593 * 22 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0420 -0.7252 1.2498 5 7 3.5011 -0.8762 1.1346 6 16 4.5057 -0.4177 2.3687 7 8 5.7372 -0.1193 1.7257 8 8 3.7768 0.5882 3.0586 9 6 4.6680 -1.9040 3.3960 10 6 5.5835 -1.6047 4.5849 11 6 5.7178 -2.8392 5.4387 12 1 5.2015 -3.7463 5.1614 13 6 6.4998 -2.8105 6.5739 14 7 7.1290 -1.7059 6.9113 15 14 6.6658 -4.3406 7.6326 16 1 7.8189 -5.1475 7.1592 17 1 6.8871 -3.9427 9.0461 18 1 5.4231 -5.1477 7.5343 19 6 4.0414 -1.4462 -0.1099 20 1 5.1259 -1.3381 -0.1226 21 6 3.6695 -2.9274 -0.2022 22 6 3.4327 -0.6863 -1.2939 23 8 2.0089 -0.6771 -1.1654 24 1 -0.3633 0.5120 0.8911 25 1 -0.3633 0.5158 -0.8889 26 1 -0.3634 -1.0276 -0.0022 27 1 1.5757 -1.7079 1.3209 28 1 1.8024 -0.1402 2.1377 29 1 3.6852 -2.2026 3.7609 30 1 5.0957 -2.7115 2.8019 31 1 6.5663 -1.3059 4.2203 32 1 5.1554 -0.7973 5.1789 33 1 7.6788 -1.6857 7.7101 34 1 2.5844 -3.0305 -0.1987 35 1 4.0708 -3.3460 -1.1252 36 1 4.0878 -3.4610 0.6512 37 1 3.8045 0.3384 -1.2987 38 1 3.7111 -1.1797 -2.2251 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245919045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:56 Heat of formation + Delta-G solvation = -152.531194 kcal Electronic energy + Delta-G solvation = -20777.718543 eV Core-core repulsion = 17553.096809 eV Total energy + Delta-G solvation = -3224.621734 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60407 -38.31747 -37.09905 -36.16249 -35.92370 -34.26477 -33.15708 -30.89031 -27.68923 -27.21647 -26.87396 -23.77433 -23.26093 -21.40051 -19.76455 -19.22301 -18.48803 -17.77947 -17.15313 -17.01839 -16.60134 -16.34860 -16.03819 -15.71568 -15.17825 -14.96779 -14.47430 -14.23698 -13.77014 -13.49188 -13.45475 -13.25948 -13.17232 -13.03571 -12.94044 -12.89736 -12.80824 -12.66428 -12.29946 -12.27472 -12.16237 -12.00215 -11.79664 -11.42163 -11.18106 -11.03311 -10.66607 -9.77351 -8.27930 -6.42431 -0.79219 1.40066 1.41918 1.53061 1.61192 2.36738 2.76148 2.79870 3.05254 3.07747 3.55813 3.73482 3.96329 4.00644 4.06187 4.12449 4.15078 4.33104 4.34549 4.61346 4.62707 4.69973 4.75413 4.80849 4.88537 4.93889 5.05447 5.17827 5.23054 5.23371 5.34814 5.40386 5.55644 5.65980 6.03578 6.19248 6.71021 7.28096 8.84419 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030221 B = 0.004588 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.279710 B = 6101.525104 C = 6168.742665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.074 3.926 3 H 0.053 0.947 4 C 0.080 3.920 5 N -0.997 5.997 6 S 2.610 3.390 7 O -0.991 6.991 8 O -0.991 6.991 9 C -0.585 4.585 10 C 0.021 3.979 11 C -0.540 4.540 12 H 0.075 0.925 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.975 3.025 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.258 1.258 19 C 0.099 3.901 20 H 0.103 0.897 21 C -0.157 4.157 22 C 0.058 3.942 23 O -0.379 6.379 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.005 0.995 32 H 0.006 0.994 33 H 0.268 0.732 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.464 -1.649 -16.676 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.014 3.986 3 H 0.071 0.929 4 C -0.044 4.044 5 N -0.836 5.836 6 S 2.710 3.290 7 O -0.982 6.982 8 O -0.982 6.982 9 C -0.717 4.717 10 C -0.018 4.018 11 C -0.578 4.578 12 H 0.093 0.907 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.798 3.202 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.182 1.182 19 C -0.007 4.007 20 H 0.121 0.879 21 C -0.216 4.216 22 C -0.020 4.020 23 O -0.297 6.297 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.101 -0.762 -16.591 20.549 hybrid contribution 0.670 -0.736 1.251 1.599 sum -11.430 -1.498 -15.340 19.189 Atomic orbital electron populations 1.21740 0.90272 1.03930 1.03679 1.22524 0.96832 0.94672 0.84559 0.92894 1.22410 0.78520 1.03113 1.00406 1.57836 1.17063 1.79770 1.28899 1.04802 0.72875 0.77196 0.74138 1.93479 1.46086 1.84262 1.74350 1.93480 1.72672 1.56558 1.75455 1.30386 1.09931 1.19756 1.11612 1.18821 0.93124 0.98120 0.91706 1.21498 1.29861 0.97711 1.08774 0.90660 1.26122 0.94828 0.99960 0.99220 1.70105 1.31592 1.29202 1.26516 0.85299 0.79217 0.78403 0.77261 1.19530 1.20775 1.18154 1.21989 0.99674 0.95369 0.83667 0.87875 1.22096 1.03165 0.92968 1.03349 1.23017 0.80881 0.99769 0.98319 1.87922 1.21088 1.77435 1.43278 0.89582 0.90990 0.90804 0.88528 0.88429 0.84182 0.84233 0.97629 0.97596 0.92342 0.91238 0.89236 0.92472 0.93344 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.57 71.98 0.69 -1.31 16 2 C 0.07 1.49 3.40 30.69 0.10 1.59 16 3 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 4 C 0.08 1.80 5.56 86.36 0.48 2.28 16 5 N -1.00 -26.72 2.97 -489.38 -1.45 -28.17 16 6 S 2.61 95.57 5.47 -56.49 -0.31 95.27 16 7 O -0.99 -41.66 16.62 -127.65 -2.12 -43.78 16 8 O -0.99 -41.60 16.62 -127.65 -2.12 -43.73 16 9 C -0.58 -22.40 6.12 71.98 0.44 -21.96 16 10 C 0.02 1.12 4.98 29.85 0.15 1.27 16 11 C -0.54 -29.97 9.11 25.60 0.23 -29.74 16 12 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 13 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 14 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 15 Si 0.97 43.16 29.54 68.60 2.03 45.18 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 18 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 19 C 0.10 2.20 3.26 44.96 0.15 2.35 16 20 H 0.10 2.48 6.88 -2.39 -0.02 2.46 16 21 C -0.16 -2.81 9.24 71.98 0.67 -2.14 16 22 C 0.06 1.13 6.36 72.08 0.46 1.59 16 23 O -0.38 -7.86 10.01 -148.98 -1.49 -9.35 16 24 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.10 1.75 7.67 -2.39 -0.02 1.73 16 28 H 0.10 2.30 6.88 -2.39 -0.02 2.29 16 29 H 0.14 4.71 8.14 -2.39 -0.02 4.69 16 30 H 0.14 4.71 8.14 -2.39 -0.02 4.69 16 31 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.07 1.21 7.22 -2.39 -0.02 1.19 16 35 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.13 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -74.08 321.30 -0.33 -74.41 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.03 Total: 12.63 kcal Atomic # 6 Polarization: -49.60 SS G_CDS: 3.83 Total: -45.78 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -1.17 Total: -84.86 kcal Atomic # 8 Polarization: -91.12 SS G_CDS: -5.73 Total: -96.85 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 95.57 SS G_CDS: -0.31 Total: 95.27 kcal Total: -74.08 -0.33 -74.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245919045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.123 kcal (2) G-P(sol) polarization free energy of solvation -74.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds