Wall clock time and date at job start Mon Mar 30 2020 01:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.47119 * 2 1 4 4 N 1.41595 * 114.00214 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00479 * 179.97438 * 4 3 2 6 6 O 1.21721 * 119.99504 * 359.97438 * 5 4 3 7 7 C 1.46244 * 120.00276 * 180.27457 * 5 4 3 8 8 C 1.35023 * 120.00302 * 172.93906 * 7 5 4 9 9 C 1.46964 * 119.99489 * 348.67947 * 8 7 5 10 10 C 1.40021 * 120.10476 * 316.40554 * 9 8 7 11 11 C 1.37595 * 119.90028 * 179.76622 * 10 9 8 12 12 C 1.39181 * 120.09869 * 0.51573 * 11 10 9 13 13 O 1.35573 * 119.89834 * 179.76367 * 12 11 10 14 14 C 1.34779 * 116.99978 * 174.33292 * 13 12 11 15 15 H 1.08002 * 120.00020 * 5.05832 * 14 13 12 16 16 C 1.38718 * 119.99878 * 185.05978 * 14 13 12 17 17 N 1.31507 * 120.00280 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99970 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47069 * 90.00019 * 18 16 14 20 20 H 1.48500 * 109.47037 * 209.99944 * 18 16 14 21 21 H 1.48498 * 109.46713 * 329.99698 * 18 16 14 22 22 C 1.39178 * 120.20248 * 359.73791 * 12 11 10 23 23 C 1.37589 * 120.10191 * 0.02562 * 22 12 11 24 24 H 1.08998 * 109.47297 * 59.99931 * 1 2 3 25 25 H 1.09004 * 109.47073 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47456 * 300.00350 * 1 2 3 27 27 H 1.08998 * 109.47456 * 239.99650 * 2 1 3 28 28 H 1.09000 * 109.46733 * 119.99314 * 2 1 3 29 29 H 0.96999 * 119.99646 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.00015 * 352.93158 * 7 5 4 31 31 H 1.08001 * 120.00344 * 168.68657 * 8 7 5 32 32 H 1.08004 * 120.04651 * 0.02562 * 10 9 8 33 33 H 1.07992 * 119.95137 * 180.23543 * 11 10 9 34 34 H 0.96994 * 120.00397 * 179.97438 * 17 16 14 35 35 H 1.08003 * 119.94436 * 179.97438 * 22 12 11 36 36 H 1.07999 * 120.05448 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4179 1.4591 -0.0006 5 6 3.9976 2.6759 -0.0012 6 8 3.3076 3.6786 -0.0017 7 6 5.4554 2.7914 -0.0078 8 6 6.0362 4.0017 -0.1522 9 6 5.2268 5.1624 -0.5492 10 6 4.2775 5.0400 -1.5712 11 6 3.5186 6.1282 -1.9363 12 6 3.7009 7.3518 -1.2986 13 8 2.9543 8.4225 -1.6649 14 6 3.0943 9.5454 -0.9326 15 1 3.8361 9.5900 -0.1490 16 6 2.2855 10.6437 -1.1856 17 7 1.3826 10.5895 -2.1401 18 14 2.4801 12.2002 -0.1712 19 1 3.4722 13.0937 -0.8210 20 1 1.1721 12.8973 -0.0785 21 1 2.9503 11.8468 1.1923 22 6 4.6469 7.4795 -0.2859 23 6 5.4070 6.3956 0.0891 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.9677 0.6600 -0.0006 30 1 6.0676 1.9085 0.1028 31 1 7.0955 4.1169 0.0240 32 1 4.1383 4.0919 -2.0693 33 1 2.7836 6.0338 -2.7218 34 1 0.8169 11.3573 -2.3167 35 1 4.7852 8.4311 0.2058 36 1 6.1406 6.4954 0.8754 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254965471.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:28 Heat of formation + Delta-G solvation = -1.326400 kcal Electronic energy + Delta-G solvation = -20493.408894 eV Core-core repulsion = 17139.899940 eV Total energy + Delta-G solvation = -3353.508953 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.60764 -38.68676 -37.48658 -36.23406 -33.09896 -32.85303 -32.09406 -30.36608 -30.09011 -27.84075 -25.41224 -23.41903 -23.10851 -21.78019 -21.06456 -19.31811 -18.10281 -17.83235 -17.15624 -16.60385 -16.04881 -14.95268 -14.58670 -14.54296 -14.27922 -13.93593 -13.72799 -13.42667 -13.38307 -13.01682 -12.83526 -12.67663 -12.41474 -12.17372 -11.83860 -11.67382 -11.36275 -11.00485 -10.89792 -10.68107 -10.59224 -10.38800 -9.52734 -9.43297 -9.14893 -8.79374 -8.68263 -7.88998 -6.85302 -6.43385 -3.98964 1.21310 1.97910 2.46228 2.71625 3.15497 3.17239 3.21582 3.62659 3.99444 4.44382 4.68607 4.71279 4.76160 4.96294 5.01924 5.12457 5.19581 5.38528 5.43006 5.55384 5.56403 5.75179 5.83480 5.86949 6.25661 6.28614 6.41362 6.59965 6.80948 6.89950 7.05854 7.14640 7.38182 7.44555 7.52442 7.53197 7.94825 8.03336 8.58077 9.02107 9.74188 10.74449 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.003814 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.884026 B = 7339.790313 C = 8217.198060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.029 3.971 3 O -0.146 6.146 4 N -0.606 5.606 5 C 0.549 3.451 6 O -0.491 6.491 7 C -0.262 4.262 8 C 0.038 3.962 9 C -0.197 4.197 10 C 0.012 3.988 11 C -0.202 4.202 12 C 0.173 3.827 13 O -0.172 6.172 14 C -0.390 4.390 15 H 0.094 0.906 16 C 0.039 3.961 17 N -0.859 5.859 18 Si 0.942 3.058 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.251 4.251 23 C -0.039 4.039 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.400 0.600 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.271 0.729 35 H 0.126 0.874 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.487 -19.444 4.406 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.049 4.049 3 O -0.150 6.150 4 N -0.309 5.309 5 C 0.340 3.660 6 O -0.364 6.364 7 C -0.283 4.283 8 C 0.019 3.981 9 C -0.198 4.198 10 C -0.006 4.006 11 C -0.221 4.221 12 C 0.118 3.882 13 O -0.074 6.074 14 C -0.466 4.466 15 H 0.112 0.888 16 C -0.166 4.166 17 N -0.494 5.494 18 Si 0.767 3.233 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.191 1.191 22 C -0.270 4.270 23 C -0.057 4.057 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.239 0.761 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.081 0.919 35 H 0.144 0.856 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.466 -18.309 4.117 19.546 hybrid contribution 0.237 -0.167 0.634 0.697 sum 5.702 -18.477 4.751 19.912 Atomic orbital electron populations 1.21696 0.92075 1.02788 1.04000 1.22924 0.96552 0.84593 1.00796 1.90634 1.02249 1.24825 1.97289 1.47727 0.94337 1.09027 1.79843 1.18576 0.88743 0.81425 0.77290 1.91026 1.63953 1.34479 1.46972 1.22267 0.91342 0.98893 1.15846 1.22351 0.98254 0.91396 0.86110 1.18305 1.04375 0.93198 1.03943 1.20467 0.90927 0.95526 0.93700 1.20016 1.05065 0.91224 1.05792 1.19537 0.89545 0.87846 0.91279 1.83906 1.55443 1.17811 1.50231 1.21410 1.20488 0.88713 1.16002 0.88841 1.25334 0.95054 0.99014 0.97177 1.70022 1.19420 1.31049 1.28866 0.85690 0.78104 0.80050 0.79474 1.19842 1.20225 1.19107 1.20952 1.02362 0.99878 1.03855 1.20737 0.96884 0.91374 0.96723 0.91230 0.90379 0.91329 0.92414 0.92498 0.76102 0.85715 0.85492 0.87998 0.86753 0.91944 0.85592 0.87497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.03 0.26 6.95 37.16 0.26 0.52 16 3 O -0.15 -2.10 11.11 -29.60 -0.33 -2.43 16 4 N -0.61 -7.72 6.39 30.16 0.19 -7.53 16 5 C 0.55 8.76 6.92 -13.04 -0.09 8.67 16 6 O -0.49 -10.56 12.58 -12.96 -0.16 -10.72 16 7 C -0.26 -3.25 9.90 -37.51 -0.37 -3.62 16 8 C 0.04 0.53 9.80 -37.19 -0.36 0.16 16 9 C -0.20 -3.70 4.54 -105.02 -0.48 -4.18 16 10 C 0.01 0.26 6.60 -39.15 -0.26 0.00 16 11 C -0.20 -4.79 9.97 -39.47 -0.39 -5.18 16 12 C 0.17 4.50 6.66 -38.88 -0.26 4.24 16 13 O -0.17 -5.14 9.74 0.74 0.01 -5.13 16 14 C -0.39 -11.28 9.48 30.91 0.29 -10.98 16 15 H 0.09 2.50 5.18 -52.49 -0.27 2.23 16 16 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 17 N -0.86 -25.79 13.67 55.48 0.76 -25.04 16 18 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 C -0.25 -5.82 9.14 -39.47 -0.36 -6.18 16 23 C -0.04 -0.76 9.78 -39.15 -0.38 -1.14 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.40 3.25 8.52 -40.82 -0.35 2.90 16 30 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.10 1.94 7.02 -52.48 -0.37 1.57 16 33 H 0.11 2.66 8.06 -52.49 -0.42 2.24 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.13 2.88 5.62 -52.48 -0.29 2.58 16 36 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 317.47 15.07 4.78 4.78 Total: -1.00 -36.22 317.47 -6.12 -42.34 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.22 Total: 5.28 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -2.12 Total: -17.50 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.95 Total: -32.57 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.48 Total: -18.29 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.22 -6.12 -42.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254965471.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.012 kcal (2) G-P(sol) polarization free energy of solvation -36.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds