Wall clock time and date at job start Mon Mar 30 2020 01:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.47119 * 2 1 4 4 N 1.41595 * 114.00214 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00479 * 179.97438 * 4 3 2 6 6 O 1.21721 * 119.99504 * 359.97438 * 5 4 3 7 7 C 1.46244 * 120.00276 * 180.27457 * 5 4 3 8 8 C 1.35023 * 120.00302 * 172.93906 * 7 5 4 9 9 C 1.46964 * 119.99489 * 348.67947 * 8 7 5 10 10 C 1.40021 * 120.10476 * 316.40554 * 9 8 7 11 11 C 1.37595 * 119.90028 * 179.76622 * 10 9 8 12 12 C 1.39181 * 120.09869 * 0.51573 * 11 10 9 13 13 O 1.35573 * 119.89834 * 179.76367 * 12 11 10 14 14 C 1.34779 * 116.99978 * 174.33292 * 13 12 11 15 15 H 1.08002 * 120.00020 * 5.05832 * 14 13 12 16 16 C 1.38718 * 119.99878 * 185.05978 * 14 13 12 17 17 N 1.31507 * 120.00280 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99970 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47069 * 90.00019 * 18 16 14 20 20 H 1.48500 * 109.47037 * 209.99944 * 18 16 14 21 21 H 1.48498 * 109.46713 * 329.99698 * 18 16 14 22 22 C 1.39178 * 120.20248 * 359.73791 * 12 11 10 23 23 C 1.37589 * 120.10191 * 0.02562 * 22 12 11 24 24 H 1.08998 * 109.47297 * 59.99931 * 1 2 3 25 25 H 1.09004 * 109.47073 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47456 * 300.00350 * 1 2 3 27 27 H 1.08998 * 109.47456 * 239.99650 * 2 1 3 28 28 H 1.09000 * 109.46733 * 119.99314 * 2 1 3 29 29 H 0.96999 * 119.99646 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.00015 * 352.93158 * 7 5 4 31 31 H 1.08001 * 120.00344 * 168.68657 * 8 7 5 32 32 H 1.08004 * 120.04651 * 0.02562 * 10 9 8 33 33 H 1.07992 * 119.95137 * 180.23543 * 11 10 9 34 34 H 0.96994 * 120.00397 * 179.97438 * 17 16 14 35 35 H 1.08003 * 119.94436 * 179.97438 * 22 12 11 36 36 H 1.07999 * 120.05448 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4179 1.4591 -0.0006 5 6 3.9976 2.6759 -0.0012 6 8 3.3076 3.6786 -0.0017 7 6 5.4554 2.7914 -0.0078 8 6 6.0362 4.0017 -0.1522 9 6 5.2268 5.1624 -0.5492 10 6 4.2775 5.0400 -1.5712 11 6 3.5186 6.1282 -1.9363 12 6 3.7009 7.3518 -1.2986 13 8 2.9543 8.4225 -1.6649 14 6 3.0943 9.5454 -0.9326 15 1 3.8361 9.5900 -0.1490 16 6 2.2855 10.6437 -1.1856 17 7 1.3826 10.5895 -2.1401 18 14 2.4801 12.2002 -0.1712 19 1 3.4722 13.0937 -0.8210 20 1 1.1721 12.8973 -0.0785 21 1 2.9503 11.8468 1.1923 22 6 4.6469 7.4795 -0.2859 23 6 5.4070 6.3956 0.0891 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.9677 0.6600 -0.0006 30 1 6.0676 1.9085 0.1028 31 1 7.0955 4.1169 0.0240 32 1 4.1383 4.0919 -2.0693 33 1 2.7836 6.0338 -2.7218 34 1 0.8169 11.3573 -2.3167 35 1 4.7852 8.4311 0.2058 36 1 6.1406 6.4954 0.8754 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254965471.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:28 Heat of formation + Delta-G solvation = -27.375635 kcal Electronic energy + Delta-G solvation = -20494.538473 eV Core-core repulsion = 17139.899940 eV Total energy + Delta-G solvation = -3354.638533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.04990 -40.32704 -38.68282 -37.84113 -34.60932 -34.11924 -33.71085 -31.82150 -31.33205 -29.39075 -27.41599 -24.67506 -23.95358 -23.52252 -22.59484 -20.61029 -19.80364 -19.11405 -18.70226 -18.12005 -16.92332 -16.42772 -16.36362 -16.10161 -15.76757 -15.49691 -15.14235 -14.80536 -14.70064 -14.48986 -14.25291 -13.80175 -13.57943 -13.47844 -13.47771 -13.01727 -12.65818 -12.54970 -12.35073 -12.23851 -12.11950 -11.72381 -11.24277 -11.00292 -10.75089 -10.40170 -9.92577 -9.55374 -8.57178 -8.48420 -6.16027 -0.03295 0.71115 1.00062 1.12322 1.33583 1.45864 1.52711 2.17502 2.43140 2.86952 3.20078 3.52589 3.62062 3.89698 4.04199 4.04356 4.12284 4.16388 4.18068 4.35040 4.54438 4.60323 4.76775 4.80560 4.89022 5.05140 5.08157 5.16804 5.24310 5.24424 5.43351 5.66656 5.72318 5.80726 5.89510 6.02428 6.25088 6.51784 6.95205 7.45382 7.77515 8.75005 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.003814 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.884026 B = 7339.790313 C = 8217.198060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.023 3.977 3 O -0.189 6.189 4 N -0.585 5.585 5 C 0.534 3.466 6 O -0.560 6.560 7 C -0.221 4.221 8 C 0.019 3.981 9 C -0.168 4.168 10 C 0.012 3.988 11 C -0.225 4.225 12 C 0.128 3.872 13 O -0.232 6.232 14 C -0.417 4.417 15 H 0.104 0.896 16 C -0.025 4.025 17 N -0.922 5.922 18 Si 1.024 2.976 19 H -0.259 1.259 20 H -0.271 1.271 21 H -0.253 1.253 22 C -0.260 4.260 23 C -0.044 4.044 24 H 0.053 0.947 25 H 0.109 0.891 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.425 0.575 30 H 0.188 0.812 31 H 0.183 0.817 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.273 0.727 35 H 0.122 0.878 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.883 -22.998 6.687 25.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.054 4.054 3 O -0.195 6.195 4 N -0.289 5.289 5 C 0.326 3.674 6 O -0.438 6.438 7 C -0.242 4.242 8 C -0.001 4.001 9 C -0.168 4.168 10 C -0.006 4.006 11 C -0.244 4.244 12 C 0.077 3.923 13 O -0.138 6.138 14 C -0.493 4.493 15 H 0.121 0.879 16 C -0.222 4.222 17 N -0.560 5.560 18 Si 0.842 3.158 19 H -0.183 1.183 20 H -0.195 1.195 21 H -0.176 1.176 22 C -0.279 4.279 23 C -0.062 4.062 24 H 0.072 0.928 25 H 0.128 0.872 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.269 0.731 30 H 0.205 0.795 31 H 0.200 0.800 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.139 0.861 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.918 -22.003 6.410 24.591 hybrid contribution -0.695 0.274 -0.004 0.747 sum 8.223 -21.729 6.406 24.100 Atomic orbital electron populations 1.21768 0.91835 1.04399 1.02638 1.23236 0.96738 0.82586 1.02808 1.90632 1.02985 1.28423 1.97441 1.47522 0.94381 1.09435 1.77573 1.19467 0.90304 0.81314 0.76362 1.91030 1.65752 1.36897 1.50164 1.22806 0.89409 1.00574 1.11388 1.22671 1.00213 0.89308 0.87860 1.18943 1.02039 0.94964 1.00879 1.20699 0.90829 0.94726 0.94349 1.20192 1.06147 0.92033 1.06059 1.20014 0.90936 0.87904 0.93457 1.83875 1.58336 1.19150 1.52475 1.21922 1.21373 0.89252 1.16723 0.87875 1.26716 0.94324 1.02737 0.98466 1.70180 1.21513 1.32557 1.31732 0.84530 0.78525 0.74795 0.77947 1.18336 1.19529 1.17624 1.21116 1.02368 1.01231 1.03175 1.21222 0.96948 0.90521 0.97487 0.92754 0.87221 0.92574 0.90411 0.90248 0.73147 0.79459 0.80035 0.86434 0.88381 0.91751 0.86056 0.82881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.28 71.98 0.74 -1.44 16 2 C 0.02 0.35 6.95 71.98 0.50 0.85 16 3 O -0.19 -5.17 11.11 -21.44 -0.24 -5.40 16 4 N -0.59 -12.84 6.39 -176.70 -1.13 -13.96 16 5 C 0.53 15.20 6.92 86.32 0.60 15.80 16 6 O -0.56 -23.61 12.58 12.92 0.16 -23.45 16 7 C -0.22 -4.03 9.90 23.61 0.23 -3.79 16 8 C 0.02 0.40 9.80 23.82 0.23 0.63 16 9 C -0.17 -5.84 4.54 -20.12 -0.09 -5.93 16 10 C 0.01 0.51 6.60 22.55 0.15 0.66 16 11 C -0.22 -11.45 9.97 22.34 0.22 -11.22 16 12 C 0.13 7.15 6.66 22.72 0.15 7.30 16 13 O -0.23 -15.22 9.74 -20.27 -0.20 -15.42 16 14 C -0.42 -25.88 9.48 67.93 0.64 -25.23 16 15 H 0.10 5.86 5.18 -2.91 -0.02 5.84 16 16 C -0.03 -1.51 5.49 84.86 0.47 -1.04 16 17 N -0.92 -59.44 13.67 21.62 0.30 -59.14 16 18 Si 1.02 44.82 29.55 68.60 2.03 46.85 16 19 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 22 C -0.26 -12.43 9.14 22.34 0.20 -12.22 16 23 C -0.04 -1.64 9.78 22.55 0.22 -1.42 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.42 4.69 8.52 -92.71 -0.79 3.90 16 30 H 0.19 1.21 8.06 -2.91 -0.02 1.18 16 31 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.12 4.38 7.02 -2.91 -0.02 4.36 16 33 H 0.10 5.08 8.06 -2.91 -0.02 5.06 16 34 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 35 H 0.12 5.77 5.62 -2.91 -0.02 5.75 16 36 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -91.10 317.47 5.51 -85.59 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.32 Total: 22.02 kcal Atomic # 6 Polarization: -41.34 SS G_CDS: 4.27 Total: -37.06 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -0.83 Total: -73.11 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.27 Total: -44.28 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -91.10 5.51 -85.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254965471.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.213 kcal (2) G-P(sol) polarization free energy of solvation -91.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds