Wall clock time and date at job start Mon Mar 30 2020 02:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99795 * 2 1 4 4 C 1.50698 * 109.47269 * 270.00184 * 3 2 1 5 5 C 1.38250 * 119.94408 * 90.00150 * 4 3 2 6 6 C 1.38197 * 120.11470 * 179.75136 * 5 4 3 7 7 C 1.38711 * 120.06659 * 0.24891 * 6 5 4 8 8 C 1.38973 * 119.81785 * 359.93957 * 7 6 5 9 9 C 1.38204 * 119.94370 * 270.25429 * 4 3 2 10 10 O 1.36105 * 120.78446 * 180.21837 * 8 7 6 11 11 C 1.43183 * 116.69352 * 342.70476 * 10 8 7 12 12 C 1.53478 * 108.23250 * 46.26316 * 11 10 8 13 13 O 1.36107 * 119.39787 * 179.80055 * 7 6 5 14 14 C 1.34775 * 120.00092 * 180.02562 * 2 1 3 15 15 O 1.21694 * 119.99809 * 179.97438 * 14 2 1 16 16 C 1.46369 * 120.00285 * 359.97438 * 14 2 1 17 17 H 1.08008 * 119.99942 * 0.02562 * 16 14 2 18 18 C 1.40041 * 120.00461 * 179.97438 * 16 14 2 19 19 N 1.30674 * 119.99929 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00468 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47254 * 90.00020 * 20 18 16 22 22 H 1.48500 * 109.47586 * 210.00397 * 20 18 16 23 23 H 1.48500 * 109.47025 * 330.00378 * 20 18 16 24 24 H 1.09002 * 109.47098 * 89.99819 * 1 2 3 25 25 H 1.08996 * 109.47083 * 209.99795 * 1 2 3 26 26 H 1.09000 * 109.47575 * 329.99878 * 1 2 3 27 27 H 1.09006 * 109.46865 * 150.00380 * 3 2 1 28 28 H 1.09001 * 109.47127 * 30.00574 * 3 2 1 29 29 H 1.08002 * 119.94561 * 0.03259 * 5 4 3 30 30 H 1.07998 * 119.97290 * 180.26724 * 6 5 4 31 31 H 1.07991 * 119.96550 * 0.03922 * 9 4 3 32 32 H 1.08996 * 109.71545 * 286.57588 * 11 10 8 33 33 H 1.09004 * 109.71088 * 165.93942 * 11 10 8 34 34 H 1.08997 * 109.70826 * 180.57117 * 12 11 10 35 35 H 1.08996 * 109.74284 * 59.96401 * 12 11 10 36 36 H 0.97001 * 120.00078 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4485 1.7038 -1.4208 5 6 1.5261 2.5020 -2.0713 6 6 1.7552 2.9073 -3.3725 7 6 2.9095 2.5098 -4.0311 8 6 3.8349 1.7042 -3.3785 9 6 3.5981 1.2999 -2.0730 10 8 4.9761 1.3063 -4.0045 11 6 5.0000 1.4198 -5.4316 12 6 4.4571 2.8039 -5.8124 13 8 3.1195 2.9136 -5.3139 14 6 2.1389 -1.1672 -0.0005 15 8 3.3558 -1.1671 -0.0010 16 6 1.4071 -2.4348 -0.0005 17 1 0.3270 -2.4349 -0.0005 18 6 2.1073 -3.6476 -0.0016 19 7 3.4140 -3.6476 -0.0021 20 14 1.1734 -5.2654 -0.0009 21 1 0.9243 -5.6938 -1.4007 22 1 1.9767 -6.3005 0.6981 23 1 -0.1234 -5.0881 0.7006 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 3.1499 1.1384 0.5138 28 1 1.6084 2.0283 0.5139 29 1 0.6269 2.8132 -1.5603 30 1 1.0351 3.5344 -3.8771 31 1 4.3148 0.6725 -1.5641 32 1 4.3730 0.6449 -5.8726 33 1 6.0234 1.3146 -5.7917 34 1 4.4552 2.9124 -6.8969 35 1 5.0802 3.5792 -5.3666 36 1 3.8990 -4.4877 -0.0032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258774764.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:11 Heat of formation + Delta-G solvation = -76.629000 kcal Electronic energy + Delta-G solvation = -21519.379274 eV Core-core repulsion = 18162.604955 eV Total energy + Delta-G solvation = -3356.774319 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.99200 -38.31060 -37.02885 -36.90125 -33.88319 -32.41441 -31.28462 -30.52308 -28.85010 -26.82407 -25.87435 -24.66501 -23.76364 -22.20202 -20.45020 -19.15601 -18.31220 -17.03908 -16.98329 -16.28813 -15.53543 -15.23269 -14.95676 -14.49852 -14.46469 -14.20289 -14.18485 -13.71547 -13.45696 -13.23950 -12.68767 -12.35353 -11.70929 -11.54068 -11.49671 -11.29489 -11.24792 -11.02066 -10.92924 -10.82951 -10.74419 -10.26790 -10.19575 -10.09627 -8.83555 -8.25425 -7.81170 -7.48489 -7.21643 -6.16984 -4.62156 1.61810 1.69088 3.14843 3.17961 3.21884 3.24714 3.39397 3.98660 4.15088 4.29976 4.58060 4.79877 4.80587 4.87194 4.90876 5.20372 5.30788 5.45120 5.51170 5.65902 5.75740 5.85185 5.89727 6.03575 6.27032 6.40601 6.42681 6.56576 6.57207 6.60037 6.92640 7.06685 7.16033 7.46595 7.64233 7.69455 8.15217 8.36341 9.04504 9.43986 10.59694 10.78550 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.005159 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.178027 B = 5426.468667 C = 6111.951456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.643 5.643 3 C 0.165 3.835 4 C -0.082 4.082 5 C -0.108 4.108 6 C -0.122 4.122 7 C 0.037 3.963 8 C 0.045 3.955 9 C -0.081 4.081 10 O -0.306 6.306 11 C 0.020 3.980 12 C 0.022 3.978 13 O -0.312 6.312 14 C 0.557 3.443 15 O -0.573 6.573 16 C -0.543 4.543 17 H 0.072 0.928 18 C 0.088 3.912 19 N -0.766 5.766 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.265 1.265 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.145 0.855 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 11.741 -8.219 14.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.380 5.380 3 C 0.041 3.959 4 C -0.084 4.084 5 C -0.127 4.127 6 C -0.140 4.140 7 C -0.007 4.007 8 C 0.001 3.999 9 C -0.100 4.100 10 O -0.220 6.220 11 C -0.056 4.056 12 C -0.053 4.053 13 O -0.228 6.228 14 C 0.363 3.637 15 O -0.455 6.455 16 C -0.579 4.579 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.395 5.395 20 Si 0.730 3.270 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.189 1.189 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.163 0.837 32 H 0.093 0.907 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.092 0.908 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.815 11.612 -8.235 14.259 hybrid contribution -0.462 -0.854 -0.452 1.071 sum -1.278 10.757 -8.687 13.886 Atomic orbital electron populations 1.21408 0.82148 1.01038 0.99625 1.48051 1.05125 1.04853 1.80016 1.19960 0.98635 0.86961 0.90393 1.20359 0.93090 0.96328 0.98635 1.20766 0.99209 0.99052 0.93657 1.20271 0.96428 1.02819 0.94525 1.18832 0.97435 0.99272 0.85206 1.18935 0.88316 0.98416 0.94274 1.20626 0.98620 0.98963 0.91775 1.86352 1.33990 1.81938 1.19738 1.23568 1.04091 0.97228 0.80688 1.23551 0.83168 0.97578 1.01045 1.86249 1.28990 1.81918 1.25597 1.18245 0.87031 0.82178 0.76224 1.90581 1.13907 1.86140 1.54914 1.21006 0.93686 0.89256 1.53997 0.91032 1.25720 0.94597 1.00239 0.92634 1.70019 1.07016 1.27203 1.35273 0.86416 0.80211 0.81589 0.78816 1.19809 1.20471 1.18874 0.95149 0.90955 0.94042 0.89930 0.91657 0.85562 0.85430 0.83742 0.90708 0.86449 0.86571 0.90846 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.88 10.19 59.85 0.61 2.49 16 2 N -0.64 -14.53 2.86 -184.64 -0.53 -15.05 16 3 C 0.16 3.20 5.57 -5.20 -0.03 3.17 16 4 C -0.08 -1.54 5.46 -104.63 -0.57 -2.12 16 5 C -0.11 -1.72 9.69 -39.59 -0.38 -2.10 16 6 C -0.12 -1.90 9.96 -39.42 -0.39 -2.29 16 7 C 0.04 0.63 6.49 -39.13 -0.25 0.38 16 8 C 0.05 0.85 6.49 -39.14 -0.25 0.60 16 9 C -0.08 -1.67 9.62 -39.42 -0.38 -2.05 16 10 O -0.31 -5.42 10.42 -32.86 -0.34 -5.76 16 11 C 0.02 0.25 7.26 37.41 0.27 0.52 16 12 C 0.02 0.25 7.26 37.41 0.27 0.52 16 13 O -0.31 -4.68 10.42 -32.86 -0.34 -5.02 16 14 C 0.56 15.73 7.61 -12.99 -0.10 15.63 16 15 O -0.57 -18.07 14.09 5.19 0.07 -18.00 16 16 C -0.54 -15.26 8.74 -35.64 -0.31 -15.58 16 17 H 0.07 1.84 6.00 -52.48 -0.31 1.53 16 18 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 19 N -0.77 -22.96 11.83 55.55 0.66 -22.30 16 20 Si 0.90 20.21 29.56 -169.99 -5.02 15.18 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.38 6.09 -51.93 -0.32 1.06 16 26 H 0.04 0.61 7.89 -51.93 -0.41 0.20 16 27 H 0.08 1.75 7.36 -51.93 -0.38 1.37 16 28 H 0.07 1.02 7.84 -51.93 -0.41 0.62 16 29 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 30 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 31 H 0.14 3.38 7.54 -52.49 -0.40 2.98 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.27 7.30 8.29 -40.82 -0.34 6.97 16 LS Contribution 308.18 15.07 4.64 4.64 Total: -1.00 -35.36 308.18 -6.80 -42.15 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.32 Total: 2.62 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.62 Total: 1.53 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.13 Total: -37.36 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.61 Total: -28.78 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.36 -6.80 -42.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258774764.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.475 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds