Wall clock time and date at job start Mon Mar 30 2020 02:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99795 * 2 1 4 4 C 1.50698 * 109.47269 * 270.00184 * 3 2 1 5 5 C 1.38250 * 119.94408 * 90.00150 * 4 3 2 6 6 C 1.38197 * 120.11470 * 179.75136 * 5 4 3 7 7 C 1.38711 * 120.06659 * 0.24891 * 6 5 4 8 8 C 1.38973 * 119.81785 * 359.93957 * 7 6 5 9 9 C 1.38204 * 119.94370 * 270.25429 * 4 3 2 10 10 O 1.36105 * 120.78446 * 180.21837 * 8 7 6 11 11 C 1.43183 * 116.69352 * 342.70476 * 10 8 7 12 12 C 1.53478 * 108.23250 * 46.26316 * 11 10 8 13 13 O 1.36107 * 119.39787 * 179.80055 * 7 6 5 14 14 C 1.34775 * 120.00092 * 180.02562 * 2 1 3 15 15 O 1.21694 * 119.99809 * 179.97438 * 14 2 1 16 16 C 1.46369 * 120.00285 * 359.97438 * 14 2 1 17 17 H 1.08008 * 119.99942 * 0.02562 * 16 14 2 18 18 C 1.40041 * 120.00461 * 179.97438 * 16 14 2 19 19 N 1.30674 * 119.99929 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00468 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47254 * 90.00020 * 20 18 16 22 22 H 1.48500 * 109.47586 * 210.00397 * 20 18 16 23 23 H 1.48500 * 109.47025 * 330.00378 * 20 18 16 24 24 H 1.09002 * 109.47098 * 89.99819 * 1 2 3 25 25 H 1.08996 * 109.47083 * 209.99795 * 1 2 3 26 26 H 1.09000 * 109.47575 * 329.99878 * 1 2 3 27 27 H 1.09006 * 109.46865 * 150.00380 * 3 2 1 28 28 H 1.09001 * 109.47127 * 30.00574 * 3 2 1 29 29 H 1.08002 * 119.94561 * 0.03259 * 5 4 3 30 30 H 1.07998 * 119.97290 * 180.26724 * 6 5 4 31 31 H 1.07991 * 119.96550 * 0.03922 * 9 4 3 32 32 H 1.08996 * 109.71545 * 286.57588 * 11 10 8 33 33 H 1.09004 * 109.71088 * 165.93942 * 11 10 8 34 34 H 1.08997 * 109.70826 * 180.57117 * 12 11 10 35 35 H 1.08996 * 109.74284 * 59.96401 * 12 11 10 36 36 H 0.97001 * 120.00078 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4485 1.7038 -1.4208 5 6 1.5261 2.5020 -2.0713 6 6 1.7552 2.9073 -3.3725 7 6 2.9095 2.5098 -4.0311 8 6 3.8349 1.7042 -3.3785 9 6 3.5981 1.2999 -2.0730 10 8 4.9761 1.3063 -4.0045 11 6 5.0000 1.4198 -5.4316 12 6 4.4571 2.8039 -5.8124 13 8 3.1195 2.9136 -5.3139 14 6 2.1389 -1.1672 -0.0005 15 8 3.3558 -1.1671 -0.0010 16 6 1.4071 -2.4348 -0.0005 17 1 0.3270 -2.4349 -0.0005 18 6 2.1073 -3.6476 -0.0016 19 7 3.4140 -3.6476 -0.0021 20 14 1.1734 -5.2654 -0.0009 21 1 0.9243 -5.6938 -1.4007 22 1 1.9767 -6.3005 0.6981 23 1 -0.1234 -5.0881 0.7006 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 3.1499 1.1384 0.5138 28 1 1.6084 2.0283 0.5139 29 1 0.6269 2.8132 -1.5603 30 1 1.0351 3.5344 -3.8771 31 1 4.3148 0.6725 -1.5641 32 1 4.3730 0.6449 -5.8726 33 1 6.0234 1.3146 -5.7917 34 1 4.4552 2.9124 -6.8969 35 1 5.0802 3.5792 -5.3666 36 1 3.8990 -4.4877 -0.0032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258774764.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:11 Heat of formation + Delta-G solvation = -101.522705 kcal Electronic energy + Delta-G solvation = -21520.458746 eV Core-core repulsion = 18162.604955 eV Total energy + Delta-G solvation = -3357.853791 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.21312 -39.96143 -38.53804 -38.23893 -35.74245 -34.56047 -32.58802 -31.80460 -30.15928 -28.57317 -27.57220 -26.12851 -25.16409 -23.56328 -21.83319 -20.89678 -19.55892 -18.50097 -18.23314 -18.04149 -17.51296 -16.48981 -16.25446 -16.20725 -15.89896 -15.81515 -15.39131 -15.02911 -14.81429 -14.65000 -14.26643 -13.88814 -13.40448 -13.15847 -13.05031 -12.93161 -12.75848 -12.66745 -12.47549 -12.16155 -12.02752 -11.99520 -11.94449 -11.44692 -10.91887 -9.80707 -9.56131 -9.11634 -8.96645 -8.25473 -6.81055 0.26433 0.33109 1.38832 1.40444 1.55302 2.04127 2.24489 2.28794 2.49742 2.62863 3.15682 3.29210 3.63818 3.66587 3.90120 3.98452 4.09188 4.11071 4.33978 4.38928 4.48991 4.54413 4.63031 4.65468 4.82963 4.94568 4.98122 5.09875 5.17858 5.18566 5.39403 5.59900 5.68263 5.84295 5.93365 6.18117 6.42273 6.44245 6.90508 7.46478 8.52093 8.71347 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.005159 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.178027 B = 5426.468667 C = 6111.951456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.645 5.645 3 C 0.165 3.835 4 C -0.096 4.096 5 C -0.095 4.095 6 C -0.114 4.114 7 C 0.038 3.962 8 C 0.029 3.971 9 C -0.117 4.117 10 O -0.337 6.337 11 C 0.008 3.992 12 C 0.021 3.979 13 O -0.317 6.317 14 C 0.539 3.461 15 O -0.624 6.624 16 C -0.570 4.570 17 H 0.092 0.908 18 C 0.028 3.972 19 N -0.823 5.823 20 Si 0.993 3.007 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.245 1.245 24 H 0.038 0.962 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.046 0.954 28 H 0.114 0.886 29 H 0.167 0.833 30 H 0.165 0.835 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.152 0.848 34 H 0.161 0.839 35 H 0.082 0.918 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 13.061 -9.716 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.381 5.381 3 C 0.042 3.958 4 C -0.098 4.098 5 C -0.113 4.113 6 C -0.133 4.133 7 C -0.007 4.007 8 C -0.016 4.016 9 C -0.136 4.136 10 O -0.253 6.253 11 C -0.066 4.066 12 C -0.054 4.054 13 O -0.232 6.232 14 C 0.344 3.656 15 O -0.510 6.510 16 C -0.606 4.606 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.453 5.453 20 Si 0.812 3.188 21 H -0.190 1.190 22 H -0.199 1.199 23 H -0.168 1.168 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.132 0.868 29 H 0.184 0.816 30 H 0.182 0.818 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.170 0.830 34 H 0.178 0.822 35 H 0.101 0.899 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.918 12.985 -9.742 16.699 hybrid contribution 0.553 -1.140 -0.085 1.270 sum -3.366 11.845 -9.827 15.754 Atomic orbital electron populations 1.21613 0.79194 1.02896 1.00704 1.47897 1.07050 1.04446 1.78663 1.20087 0.97616 0.86691 0.91396 1.20321 0.93411 0.97744 0.98309 1.21098 0.99250 0.97165 0.93783 1.20747 0.96163 1.02031 0.94323 1.19021 0.97223 0.98454 0.86027 1.19000 0.89351 0.99257 0.93959 1.20449 0.99365 1.00528 0.93307 1.86299 1.33972 1.82281 1.22749 1.23996 1.06403 0.98288 0.77937 1.23915 0.81475 0.96524 1.03468 1.86237 1.31240 1.81450 1.24231 1.18639 0.86731 0.84242 0.75968 1.90545 1.16120 1.87455 1.56888 1.21559 0.94878 0.89959 1.54240 0.88963 1.26977 0.95449 1.04921 0.91317 1.70212 1.09541 1.28641 1.36943 0.85095 0.79046 0.75400 0.79245 1.19012 1.19928 1.16764 0.94291 0.91938 0.89375 0.93535 0.86849 0.81571 0.81766 0.88733 0.91216 0.83049 0.82177 0.89948 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.40 10.19 127.77 1.30 4.70 16 2 N -0.64 -29.35 2.86 -856.28 -2.45 -31.79 16 3 C 0.17 6.50 5.57 85.63 0.48 6.98 16 4 C -0.10 -3.66 5.46 -19.87 -0.11 -3.76 16 5 C -0.09 -2.74 9.69 22.26 0.22 -2.52 16 6 C -0.11 -3.20 9.96 22.37 0.22 -2.98 16 7 C 0.04 1.24 6.49 22.56 0.15 1.39 16 8 C 0.03 1.14 6.49 22.56 0.15 1.29 16 9 C -0.12 -5.22 9.62 22.37 0.22 -5.00 16 10 O -0.34 -12.60 10.42 -82.52 -0.86 -13.46 16 11 C 0.01 0.20 7.26 72.14 0.52 0.73 16 12 C 0.02 0.41 7.26 72.14 0.52 0.93 16 13 O -0.32 -8.68 10.42 -82.54 -0.86 -9.54 16 14 C 0.54 31.78 7.61 86.36 0.66 32.44 16 15 O -0.62 -42.35 14.09 -4.33 -0.06 -42.41 16 16 C -0.57 -32.74 8.74 24.83 0.22 -32.53 16 17 H 0.09 4.72 6.00 -2.91 -0.02 4.70 16 18 C 0.03 1.59 5.50 85.30 0.47 2.06 16 19 N -0.82 -51.82 11.83 21.83 0.26 -51.56 16 20 Si 0.99 41.85 29.56 68.60 2.03 43.87 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.24 -9.43 7.11 99.48 0.71 -8.72 16 24 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 2.27 6.09 -2.39 -0.01 2.25 16 26 H 0.09 2.21 7.89 -2.39 -0.02 2.19 16 27 H 0.05 2.13 7.36 -2.38 -0.02 2.12 16 28 H 0.11 3.28 7.84 -2.39 -0.02 3.26 16 29 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 30 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.09 5.06 7.54 -2.91 -0.02 5.04 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.15 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.27 15.56 8.29 -92.71 -0.77 14.79 16 Total: -1.00 -84.89 308.18 4.17 -80.72 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 1.10 Total: 20.46 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 5.01 Total: 3.72 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -2.19 Total: -83.35 kcal Atomic # 8 Polarization: -63.64 SS G_CDS: -1.78 Total: -65.42 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -84.89 4.17 -80.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258774764.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.800 kcal (2) G-P(sol) polarization free energy of solvation -84.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds