Wall clock time and date at job start Mon Mar 30 2020 01:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47400 * 2 1 4 4 C 1.50708 * 109.47089 * 239.99862 * 2 1 3 5 5 O 1.20829 * 119.99677 * 240.00019 * 4 2 1 6 6 O 1.34224 * 119.99967 * 60.00469 * 4 2 1 7 7 N 1.46497 * 109.47171 * 120.00024 * 2 1 3 8 8 C 1.46502 * 120.00123 * 59.99728 * 7 2 1 9 9 C 1.34782 * 120.00153 * 239.99778 * 7 2 1 10 10 O 1.21576 * 119.99638 * 4.61492 * 9 7 2 11 11 C 1.47644 * 120.00048 * 184.61260 * 9 7 2 12 12 C 1.40016 * 119.89587 * 321.29909 * 11 9 7 13 13 C 1.36315 * 120.10575 * 179.74434 * 12 11 9 14 14 C 1.40884 * 119.89140 * 0.25618 * 13 12 11 15 15 C 1.41111 * 120.10351 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99445 * 340.98221 * 15 14 13 17 17 C 1.40227 * 120.00386 * 160.99265 * 15 14 13 18 18 N 1.30645 * 119.99683 * 334.29181 * 17 15 14 19 19 Si 1.86799 * 120.00145 * 154.29343 * 17 15 14 20 20 H 1.48500 * 109.47023 * 94.99237 * 19 17 15 21 21 H 1.48501 * 109.46940 * 214.99000 * 19 17 15 22 22 H 1.48496 * 109.47122 * 334.98909 * 19 17 15 23 23 C 1.40884 * 119.79359 * 359.97438 * 14 13 12 24 24 C 1.36317 * 119.89544 * 0.02562 * 23 14 13 25 25 H 1.09003 * 109.47296 * 59.99695 * 1 2 3 26 26 H 1.09001 * 109.47400 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47346 * 300.00253 * 1 2 3 28 28 H 0.96693 * 117.00450 * 180.02562 * 6 4 2 29 29 H 1.08997 * 109.47641 * 264.37143 * 8 7 2 30 30 H 1.09008 * 109.46901 * 24.37069 * 8 7 2 31 31 H 1.09006 * 109.47529 * 144.36692 * 8 7 2 32 32 H 1.07999 * 119.94746 * 0.02562 * 12 11 9 33 33 H 1.08000 * 120.05044 * 180.26884 * 13 12 11 34 34 H 0.96997 * 119.99597 * 180.02562 * 18 17 15 35 35 H 1.08009 * 120.05247 * 180.02562 * 23 14 13 36 36 H 1.07998 * 119.94627 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7269 -1.6929 -1.1196 6 8 1.7081 -0.2519 -2.4496 7 7 2.0183 -0.6906 1.1961 8 6 1.6643 -2.0932 1.4280 9 6 2.7932 -0.0356 2.0833 10 8 3.0179 1.1500 1.9352 11 6 3.3691 -0.7579 3.2351 12 6 2.6113 -1.7304 3.8987 13 6 3.1406 -2.4036 4.9593 14 6 4.4504 -2.1155 5.3908 15 6 5.0030 -2.8100 6.4879 16 1 4.3557 -3.3246 7.1826 17 6 6.3924 -2.8318 6.6762 18 7 7.1925 -2.6786 5.6548 19 14 7.0993 -3.0801 8.3874 20 1 7.4051 -4.5187 8.5926 21 1 8.3449 -2.2841 8.5286 22 1 6.1097 -2.6348 9.4011 23 6 5.2073 -1.1327 4.7229 24 6 4.6695 -0.4648 3.6632 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 2.0535 -0.7410 -3.2088 29 1 0.7944 -2.1450 2.0827 30 1 1.4319 -2.5713 0.4764 31 1 2.5034 -2.6069 1.8974 32 1 1.6074 -1.9508 3.5670 33 1 2.5568 -3.1566 5.4678 34 1 8.1535 -2.6940 5.7850 35 1 6.2120 -0.9089 5.0499 36 1 5.2491 0.2885 3.1503 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262096182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:39 Heat of formation + Delta-G solvation = -99.913419 kcal Electronic energy + Delta-G solvation = -21213.518810 eV Core-core repulsion = 17855.734803 eV Total energy + Delta-G solvation = -3357.784007 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.64892 -39.18969 -37.20390 -36.25128 -35.31274 -33.99212 -31.79969 -29.97364 -29.34464 -26.69651 -26.02306 -24.80274 -22.33375 -21.19475 -20.55390 -18.90425 -18.09158 -17.60454 -16.92630 -16.49910 -15.78512 -15.49760 -15.36238 -14.54039 -14.24341 -13.77281 -13.52457 -13.17467 -13.00378 -12.66357 -12.49407 -12.34603 -12.14715 -11.98830 -11.83481 -11.61983 -11.39538 -11.28467 -11.13850 -10.99322 -10.63283 -10.45146 -10.10024 -9.53804 -9.22773 -9.06322 -8.44570 -7.67860 -7.57754 -7.07884 -4.56219 2.15678 2.30632 2.70595 2.90126 2.95776 3.02460 3.05356 3.46743 3.70361 3.74681 4.44373 4.80654 4.98861 5.12103 5.42847 5.53816 5.55288 5.56416 5.70962 5.91016 5.96599 6.17912 6.21338 6.27620 6.41765 6.72893 6.79678 6.86071 7.06737 7.13202 7.44336 7.60988 7.72275 7.83043 7.87181 8.00715 8.08317 8.42673 8.64781 8.77583 8.84375 9.83896 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037486 B = 0.003890 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.763545 B = 7196.909923 C = 7274.854221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.149 3.851 3 H 0.136 0.864 4 C 0.465 3.535 5 O -0.500 6.500 6 O -0.517 6.517 7 N -0.606 5.606 8 C 0.085 3.915 9 C 0.582 3.418 10 O -0.565 6.565 11 C -0.285 4.285 12 C -0.052 4.052 13 C -0.240 4.240 14 C 0.126 3.874 15 C -0.443 4.443 16 H 0.085 0.915 17 C 0.079 3.921 18 N -0.759 5.759 19 Si 0.908 3.092 20 H -0.267 1.267 21 H -0.272 1.272 22 H -0.256 1.256 23 C -0.189 4.189 24 C -0.036 4.036 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.407 0.593 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.288 0.712 35 H 0.119 0.881 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.686 0.770 -8.527 12.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.042 3.958 3 H 0.153 0.847 4 C 0.305 3.695 5 O -0.386 6.386 6 O -0.329 6.329 7 N -0.341 5.341 8 C -0.058 4.058 9 C 0.378 3.622 10 O -0.445 6.445 11 C -0.289 4.289 12 C -0.071 4.071 13 C -0.260 4.260 14 C 0.123 3.877 15 C -0.470 4.470 16 H 0.103 0.897 17 C -0.145 4.145 18 N -0.381 5.381 19 Si 0.731 3.269 20 H -0.192 1.192 21 H -0.196 1.196 22 H -0.179 1.179 23 C -0.208 4.208 24 C -0.056 4.056 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.266 0.734 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.137 0.863 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.261 1.315 -8.311 11.791 hybrid contribution 0.719 -0.649 0.041 0.969 sum -7.542 0.666 -8.270 11.212 Atomic orbital electron populations 1.22069 0.91883 1.03205 1.03929 1.20368 0.95891 0.98541 0.80954 0.84683 1.24197 0.77339 0.82981 0.84960 1.90747 1.34987 1.25937 1.86960 1.84531 1.72409 1.59182 1.16748 1.47616 1.52885 1.13093 1.20469 1.22059 1.01321 0.81253 1.01119 1.18881 0.75240 0.86111 0.81918 1.90636 1.60967 1.15808 1.77091 1.18660 0.98313 1.08904 1.03064 1.20669 0.97342 0.93727 0.95369 1.20607 0.98209 1.05401 1.01766 1.17731 0.90874 0.89068 0.90035 1.19829 0.91592 1.27171 1.08378 0.89651 1.26132 0.97463 0.92063 0.98812 1.69793 1.05827 1.30385 1.32046 0.86290 0.79141 0.79303 0.82147 1.19217 1.19642 1.17941 1.20936 1.01273 0.99425 0.99216 1.20325 0.92902 0.96659 0.95667 0.90349 0.91851 0.90435 0.73418 0.92906 0.91920 0.89205 0.88150 0.88542 0.90086 0.86328 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.12 37.15 0.34 -1.26 16 2 C 0.15 2.12 3.15 -69.08 -0.22 1.91 16 3 H 0.14 2.04 6.91 -51.93 -0.36 1.69 16 4 C 0.47 6.43 7.33 36.01 0.26 6.69 16 5 O -0.50 -8.57 15.37 -18.75 -0.29 -8.86 16 6 O -0.52 -5.16 13.33 -39.24 -0.52 -5.68 16 7 N -0.61 -10.58 2.54 -176.45 -0.45 -11.03 16 8 C 0.08 1.32 7.35 59.85 0.44 1.76 16 9 C 0.58 12.57 7.35 -12.42 -0.09 12.48 16 10 O -0.56 -13.37 16.22 5.30 0.09 -13.29 16 11 C -0.29 -6.60 5.27 -104.73 -0.55 -7.16 16 12 C -0.05 -1.13 7.51 -39.61 -0.30 -1.42 16 13 C -0.24 -5.58 9.73 -39.27 -0.38 -5.96 16 14 C 0.13 3.22 5.62 -106.81 -0.60 2.62 16 15 C -0.44 -11.03 9.02 -37.75 -0.34 -11.37 16 16 H 0.09 2.01 7.97 -52.48 -0.42 1.59 16 17 C 0.08 1.85 5.00 -17.31 -0.09 1.76 16 18 N -0.76 -18.47 11.08 55.56 0.62 -17.86 16 19 Si 0.91 17.30 29.63 -169.99 -5.04 12.26 16 20 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 21 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 22 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 23 C -0.19 -4.87 8.70 -39.27 -0.34 -5.22 16 24 C -0.04 -0.90 9.55 -39.61 -0.38 -1.27 16 25 H 0.08 0.67 8.11 -51.93 -0.42 0.24 16 26 H 0.06 0.61 7.67 -51.93 -0.40 0.22 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.41 2.34 9.10 45.56 0.41 2.75 16 29 H 0.05 0.71 6.78 -51.93 -0.35 0.36 16 30 H 0.06 0.89 6.45 -51.92 -0.34 0.56 16 31 H 0.09 1.61 5.90 -51.93 -0.31 1.30 16 32 H 0.10 1.83 5.19 -52.49 -0.27 1.55 16 33 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 34 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 35 H 0.12 3.11 6.04 -52.48 -0.32 2.80 16 36 H 0.09 2.25 8.04 -52.49 -0.42 1.82 16 LS Contribution 306.84 15.07 4.62 4.62 Total: -1.00 -30.77 306.84 -6.38 -37.15 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -3.17 Total: 9.12 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -2.24 Total: -6.44 kcal Atomic # 7 Polarization: -29.05 SS G_CDS: 0.17 Total: -28.88 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.73 Total: -27.83 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.04 Total: 12.26 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.77 -6.38 -37.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262096182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.766 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds