Wall clock time and date at job start Mon Mar 30 2020 01:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47400 * 2 1 4 4 C 1.50708 * 109.47089 * 239.99862 * 2 1 3 5 5 O 1.20829 * 119.99677 * 240.00019 * 4 2 1 6 6 O 1.34224 * 119.99967 * 60.00469 * 4 2 1 7 7 N 1.46497 * 109.47171 * 120.00024 * 2 1 3 8 8 C 1.46502 * 120.00123 * 59.99728 * 7 2 1 9 9 C 1.34782 * 120.00153 * 239.99778 * 7 2 1 10 10 O 1.21576 * 119.99638 * 4.61492 * 9 7 2 11 11 C 1.47644 * 120.00048 * 184.61260 * 9 7 2 12 12 C 1.40016 * 119.89587 * 321.29909 * 11 9 7 13 13 C 1.36315 * 120.10575 * 179.74434 * 12 11 9 14 14 C 1.40884 * 119.89140 * 0.25618 * 13 12 11 15 15 C 1.41111 * 120.10351 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99445 * 340.98221 * 15 14 13 17 17 C 1.40227 * 120.00386 * 160.99265 * 15 14 13 18 18 N 1.30645 * 119.99683 * 334.29181 * 17 15 14 19 19 Si 1.86799 * 120.00145 * 154.29343 * 17 15 14 20 20 H 1.48500 * 109.47023 * 94.99237 * 19 17 15 21 21 H 1.48501 * 109.46940 * 214.99000 * 19 17 15 22 22 H 1.48496 * 109.47122 * 334.98909 * 19 17 15 23 23 C 1.40884 * 119.79359 * 359.97438 * 14 13 12 24 24 C 1.36317 * 119.89544 * 0.02562 * 23 14 13 25 25 H 1.09003 * 109.47296 * 59.99695 * 1 2 3 26 26 H 1.09001 * 109.47400 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47346 * 300.00253 * 1 2 3 28 28 H 0.96693 * 117.00450 * 180.02562 * 6 4 2 29 29 H 1.08997 * 109.47641 * 264.37143 * 8 7 2 30 30 H 1.09008 * 109.46901 * 24.37069 * 8 7 2 31 31 H 1.09006 * 109.47529 * 144.36692 * 8 7 2 32 32 H 1.07999 * 119.94746 * 0.02562 * 12 11 9 33 33 H 1.08000 * 120.05044 * 180.26884 * 13 12 11 34 34 H 0.96997 * 119.99597 * 180.02562 * 18 17 15 35 35 H 1.08009 * 120.05247 * 180.02562 * 23 14 13 36 36 H 1.07998 * 119.94627 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7269 -1.6929 -1.1196 6 8 1.7081 -0.2519 -2.4496 7 7 2.0183 -0.6906 1.1961 8 6 1.6643 -2.0932 1.4280 9 6 2.7932 -0.0356 2.0833 10 8 3.0179 1.1500 1.9352 11 6 3.3691 -0.7579 3.2351 12 6 2.6113 -1.7304 3.8987 13 6 3.1406 -2.4036 4.9593 14 6 4.4504 -2.1155 5.3908 15 6 5.0030 -2.8100 6.4879 16 1 4.3557 -3.3246 7.1826 17 6 6.3924 -2.8318 6.6762 18 7 7.1925 -2.6786 5.6548 19 14 7.0993 -3.0801 8.3874 20 1 7.4051 -4.5187 8.5926 21 1 8.3449 -2.2841 8.5286 22 1 6.1097 -2.6348 9.4011 23 6 5.2073 -1.1327 4.7229 24 6 4.6695 -0.4648 3.6632 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 2.0535 -0.7410 -3.2088 29 1 0.7944 -2.1450 2.0827 30 1 1.4319 -2.5713 0.4764 31 1 2.5034 -2.6069 1.8974 32 1 1.6074 -1.9508 3.5670 33 1 2.5568 -3.1566 5.4678 34 1 8.1535 -2.6940 5.7850 35 1 6.2120 -0.9089 5.0499 36 1 5.2491 0.2885 3.1503 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262096182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:39 Heat of formation + Delta-G solvation = -119.557613 kcal Electronic energy + Delta-G solvation = -21214.370646 eV Core-core repulsion = 17855.734803 eV Total energy + Delta-G solvation = -3358.635843 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.87056 -40.66808 -38.95810 -37.37476 -36.67556 -35.76976 -33.12856 -31.78689 -31.04976 -28.06950 -27.68085 -25.92910 -23.87601 -22.97684 -22.03499 -20.38032 -19.45406 -19.14972 -18.25249 -17.86912 -17.31038 -17.02121 -16.63577 -16.02637 -15.87796 -15.31882 -14.93483 -14.59874 -14.41733 -14.20672 -13.92367 -13.73882 -13.54268 -13.27492 -13.22721 -12.97517 -12.82206 -12.68390 -12.60767 -12.47682 -12.26217 -11.83093 -11.60720 -11.33782 -11.02069 -10.76674 -9.85717 -9.54061 -9.43029 -8.85038 -6.44550 0.52684 1.07540 1.16788 1.35632 1.40988 1.52447 1.56342 2.01983 2.15209 2.28953 2.66676 3.67905 3.72878 3.94129 4.07697 4.18828 4.24701 4.37624 4.40862 4.69017 4.72373 4.78482 4.96124 4.96936 5.01872 5.17147 5.20438 5.27705 5.43175 5.54733 5.58783 5.79379 5.95682 6.01774 6.20125 6.33894 6.55524 6.77543 6.90738 6.91322 7.19921 8.10426 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037486 B = 0.003890 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.763545 B = 7196.909923 C = 7274.854221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.139 3.861 3 H 0.124 0.876 4 C 0.476 3.524 5 O -0.539 6.539 6 O -0.501 6.501 7 N -0.600 5.600 8 C 0.083 3.917 9 C 0.580 3.420 10 O -0.595 6.595 11 C -0.297 4.297 12 C -0.039 4.039 13 C -0.252 4.252 14 C 0.099 3.901 15 C -0.472 4.472 16 H 0.093 0.907 17 C 0.040 3.960 18 N -0.792 5.792 19 Si 0.985 3.015 20 H -0.256 1.256 21 H -0.266 1.266 22 H -0.254 1.254 23 C -0.211 4.211 24 C -0.051 4.051 25 H 0.103 0.897 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.429 0.571 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.139 0.861 33 H 0.115 0.885 34 H 0.297 0.703 35 H 0.103 0.897 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.566 0.102 -8.951 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.034 3.966 3 H 0.142 0.858 4 C 0.318 3.682 5 O -0.429 6.429 6 O -0.314 6.314 7 N -0.333 5.333 8 C -0.058 4.058 9 C 0.375 3.625 10 O -0.478 6.478 11 C -0.301 4.301 12 C -0.057 4.057 13 C -0.271 4.271 14 C 0.095 3.905 15 C -0.498 4.498 16 H 0.111 0.889 17 C -0.181 4.181 18 N -0.415 5.415 19 Si 0.804 3.196 20 H -0.180 1.180 21 H -0.191 1.191 22 H -0.177 1.177 23 C -0.231 4.231 24 C -0.071 4.071 25 H 0.121 0.879 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.292 0.708 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.181 0.632 -8.803 13.474 hybrid contribution 1.245 -0.413 -0.026 1.312 sum -8.936 0.219 -8.829 12.564 Atomic orbital electron populations 1.22054 0.88369 1.04458 1.05186 1.20668 0.98492 0.97490 0.79962 0.85804 1.23943 0.76369 0.82080 0.85855 1.90750 1.36741 1.27723 1.87644 1.84464 1.71739 1.58865 1.16302 1.47541 1.51400 1.13692 1.20626 1.22154 1.01257 0.79876 1.02559 1.18636 0.75852 0.85705 0.82336 1.90612 1.62373 1.16963 1.77855 1.18954 0.97846 1.09268 1.04018 1.20974 0.98592 0.92146 0.93995 1.20881 0.97700 1.06143 1.02383 1.18091 0.92200 0.89456 0.90703 1.20149 0.92816 1.28057 1.08823 0.88922 1.27037 0.97273 0.91107 1.02689 1.69829 1.06600 1.30755 1.34312 0.85155 0.78237 0.79661 0.76577 1.18044 1.19082 1.17729 1.20868 1.01054 1.00748 1.00392 1.20419 0.94118 0.96767 0.95762 0.87877 0.90536 0.90441 0.70842 0.89935 0.90251 0.91722 0.84327 0.86658 0.89192 0.87908 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.12 71.98 0.66 -1.83 16 2 C 0.14 3.70 3.15 44.25 0.14 3.84 16 3 H 0.12 3.62 6.91 -2.39 -0.02 3.61 16 4 C 0.48 12.13 7.33 71.24 0.52 12.65 16 5 O -0.54 -17.72 15.37 21.95 0.34 -17.38 16 6 O -0.50 -8.43 13.33 -51.36 -0.68 -9.11 16 7 N -0.60 -20.10 2.54 -830.41 -2.11 -22.20 16 8 C 0.08 2.40 7.35 127.77 0.94 3.34 16 9 C 0.58 25.02 7.35 86.73 0.64 25.65 16 10 O -0.60 -28.57 16.22 -3.96 -0.06 -28.64 16 11 C -0.30 -13.90 5.27 -19.93 -0.11 -14.01 16 12 C -0.04 -1.64 7.51 22.25 0.17 -1.47 16 13 C -0.25 -11.65 9.73 22.47 0.22 -11.43 16 14 C 0.10 5.18 5.62 -21.28 -0.12 5.06 16 15 C -0.47 -23.91 9.02 23.46 0.21 -23.70 16 16 H 0.09 4.39 7.97 -2.91 -0.02 4.37 16 17 C 0.04 1.87 5.00 85.35 0.43 2.30 16 18 N -0.79 -39.65 11.08 21.87 0.24 -39.40 16 19 Si 0.98 35.35 29.63 68.60 2.03 37.38 16 20 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 21 H -0.27 -9.24 7.11 99.48 0.71 -8.54 16 22 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 23 C -0.21 -11.41 8.70 22.47 0.20 -11.21 16 24 C -0.05 -2.66 9.55 22.25 0.21 -2.44 16 25 H 0.10 1.32 8.11 -2.39 -0.02 1.31 16 26 H 0.08 1.16 7.67 -2.39 -0.02 1.14 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.43 3.53 9.10 -74.06 -0.67 2.86 16 29 H 0.08 1.90 6.78 -2.39 -0.02 1.88 16 30 H 0.08 2.05 6.45 -2.38 -0.02 2.04 16 31 H 0.06 2.23 5.90 -2.38 -0.01 2.22 16 32 H 0.14 4.66 5.19 -2.91 -0.02 4.65 16 33 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 34 H 0.30 13.24 8.29 -92.71 -0.77 12.47 16 35 H 0.10 5.74 6.04 -2.91 -0.02 5.72 16 36 H 0.09 4.42 8.04 -2.91 -0.02 4.39 16 Total: -1.00 -68.94 306.84 4.32 -64.63 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.46 Total: 28.01 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 4.10 Total: -13.27 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -1.86 Total: -61.61 kcal Atomic # 8 Polarization: -54.72 SS G_CDS: -0.41 Total: -55.13 kcal Atomic # 14 Polarization: 35.35 SS G_CDS: 2.03 Total: 37.38 kcal Total: -68.94 4.32 -64.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262096182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.931 kcal (2) G-P(sol) polarization free energy of solvation -68.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds