Wall clock time and date at job start Mon Mar 30 2020 01:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47523 * 2 1 4 4 C 1.50702 * 109.47350 * 120.00133 * 2 1 3 5 5 O 1.20819 * 120.00271 * 119.99593 * 4 2 1 6 6 O 1.34230 * 119.99811 * 299.99697 * 4 2 1 7 7 N 1.46504 * 109.46867 * 239.99455 * 2 1 3 8 8 C 1.46492 * 120.00287 * 300.00424 * 7 2 1 9 9 C 1.34785 * 119.99666 * 120.00021 * 7 2 1 10 10 O 1.21594 * 119.99587 * 354.93881 * 9 7 2 11 11 C 1.47639 * 120.00166 * 175.20801 * 9 7 2 12 12 C 1.40017 * 119.89376 * 335.01872 * 11 9 7 13 13 C 1.36312 * 120.10262 * 179.75488 * 12 11 9 14 14 C 1.40889 * 119.89323 * 0.51460 * 13 12 11 15 15 C 1.41108 * 120.10285 * 179.71184 * 14 13 12 16 16 H 1.08000 * 120.00653 * 209.05885 * 15 14 13 17 17 C 1.40227 * 119.99807 * 29.06640 * 15 14 13 18 18 N 1.30648 * 120.00175 * 10.36792 * 17 15 14 19 19 Si 1.86802 * 120.00100 * 190.36497 * 17 15 14 20 20 H 1.48506 * 109.46970 * 60.00350 * 19 17 15 21 21 H 1.48504 * 109.47304 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47251 * 300.00317 * 19 17 15 23 23 C 1.40886 * 119.79515 * 359.73956 * 14 13 12 24 24 C 1.36321 * 119.89053 * 359.97438 * 23 14 13 25 25 H 1.09001 * 109.47280 * 300.00040 * 1 2 3 26 26 H 1.09002 * 109.47565 * 60.00193 * 1 2 3 27 27 H 1.09004 * 109.47645 * 180.02562 * 1 2 3 28 28 H 0.96699 * 117.00233 * 179.97438 * 6 4 2 29 29 H 1.09009 * 109.46808 * 275.59336 * 8 7 2 30 30 H 1.08988 * 109.47463 * 35.59394 * 8 7 2 31 31 H 1.09004 * 109.46917 * 155.59996 * 8 7 2 32 32 H 1.07994 * 119.94385 * 0.02562 * 12 11 9 33 33 H 1.08007 * 120.05163 * 180.25344 * 13 12 11 34 34 H 0.96998 * 120.00027 * 179.97438 * 18 17 15 35 35 H 1.07995 * 120.05814 * 179.97438 * 23 14 13 36 36 H 1.07996 * 119.95019 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7269 -1.6928 1.1196 6 8 1.7081 -0.2518 2.4496 7 7 2.0182 -0.6908 -1.1962 8 6 1.6642 -2.0932 -1.4279 9 6 2.7931 -0.0358 -2.0834 10 8 3.0112 1.1518 -1.9397 11 6 3.3722 -0.7589 -3.2330 12 6 3.5795 -2.1414 -3.1551 13 6 4.1093 -2.8142 -4.2157 14 6 4.4584 -2.1144 -5.3876 15 6 5.0128 -2.8054 -6.4859 16 1 5.6898 -2.2981 -7.1572 17 6 4.6845 -4.1508 -6.7059 18 7 3.7187 -4.7074 -6.0244 19 14 5.6279 -5.1473 -7.9733 20 1 7.0656 -5.1848 -7.6031 21 1 5.0916 -6.5315 -8.0138 22 1 5.4771 -4.5181 -9.3099 23 6 4.2529 -0.7224 -5.4593 24 6 3.7171 -0.0592 -4.3956 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.0535 -0.7410 3.2088 29 1 2.3591 -2.7372 -0.8887 30 1 0.6500 -2.2754 -1.0731 31 1 1.7206 -2.3107 -2.4946 32 1 3.3152 -2.6763 -2.2548 33 1 4.2650 -3.8813 -4.1562 34 1 3.4914 -5.6380 -6.1768 35 1 4.5193 -0.1817 -6.3553 36 1 3.5595 1.0079 -4.4494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262096183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:41 Heat of formation + Delta-G solvation = -89.836632 kcal Electronic energy + Delta-G solvation = -21295.842274 eV Core-core repulsion = 17938.495229 eV Total energy + Delta-G solvation = -3357.347045 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.64435 -39.23244 -37.21443 -36.24487 -35.35020 -33.91017 -31.96355 -29.70402 -29.49138 -26.76380 -26.00725 -24.78920 -22.38191 -20.99956 -20.70470 -18.94502 -18.07923 -17.50473 -16.95075 -16.41125 -15.75461 -15.55830 -15.35163 -14.59293 -14.21251 -13.79745 -13.55897 -13.24499 -12.92080 -12.70035 -12.44501 -12.35122 -12.17688 -11.87952 -11.63986 -11.54858 -11.44940 -11.23388 -11.12871 -10.98453 -10.58148 -10.48752 -10.02782 -9.47517 -9.34356 -9.05753 -8.40706 -7.65907 -7.49669 -6.95382 -4.60919 2.16411 2.18400 2.77763 2.95997 2.97072 2.99528 3.02500 3.41427 3.75407 3.81574 4.54226 4.82825 4.98182 5.13167 5.39026 5.51131 5.53555 5.60082 5.87463 5.88372 6.03908 6.19950 6.21196 6.28673 6.44537 6.71835 6.81819 6.85338 7.04100 7.13098 7.46196 7.55276 7.78454 7.84099 7.87416 7.97506 8.09055 8.42628 8.65386 8.75989 8.85522 9.95718 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031894 B = 0.004175 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.706920 B = 6704.795160 C = 7176.050764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.150 3.850 3 H 0.136 0.864 4 C 0.466 3.534 5 O -0.502 6.502 6 O -0.517 6.517 7 N -0.606 5.606 8 C 0.070 3.930 9 C 0.579 3.421 10 O -0.570 6.570 11 C -0.278 4.278 12 C -0.080 4.080 13 C -0.173 4.173 14 C 0.129 3.871 15 C -0.446 4.446 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.782 5.782 19 Si 0.916 3.084 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.263 1.263 23 C -0.235 4.235 24 C -0.025 4.025 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.407 0.593 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.286 0.714 35 H 0.098 0.902 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.103 1.509 9.494 11.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.153 0.847 4 C 0.306 3.694 5 O -0.388 6.388 6 O -0.329 6.329 7 N -0.340 5.340 8 C -0.072 4.072 9 C 0.376 3.624 10 O -0.451 6.451 11 C -0.282 4.282 12 C -0.099 4.099 13 C -0.192 4.192 14 C 0.126 3.874 15 C -0.474 4.474 16 H 0.101 0.899 17 C -0.147 4.147 18 N -0.406 5.406 19 Si 0.740 3.260 20 H -0.186 1.186 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.254 4.254 24 C -0.045 4.045 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.265 0.735 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.141 0.859 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.083 1.823 9.208 11.186 hybrid contribution 0.580 -1.020 0.059 1.175 sum -5.503 0.803 9.268 10.808 Atomic orbital electron populations 1.22068 0.91901 1.03267 1.03958 1.20365 0.95924 0.98490 0.80879 0.84684 1.24267 0.77281 0.82939 0.84936 1.90720 1.35144 1.25980 1.86975 1.84538 1.72424 1.59171 1.16759 1.47514 1.52557 1.13301 1.20596 1.22477 0.99415 0.81131 1.04204 1.18814 0.75822 0.86020 0.81761 1.90633 1.62150 1.15997 1.76325 1.18784 1.19442 0.94046 0.95956 1.21251 0.97386 0.92706 0.98526 1.21077 1.05386 1.00273 0.92499 1.17828 0.86645 0.91089 0.91823 1.19797 1.23442 0.94943 1.09223 0.89913 1.26054 0.93872 0.98005 0.96779 1.69694 1.21860 1.14067 1.34951 0.86224 0.80651 0.78367 0.80755 1.18605 1.20088 1.18751 1.20752 1.10698 0.95402 0.98567 1.20316 0.94727 0.97472 0.91952 0.90328 0.90370 0.91745 0.73460 0.91496 0.92839 0.87967 0.86887 0.85898 0.90319 0.88335 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.09 37.15 0.34 -1.32 16 2 C 0.15 2.15 3.16 -69.08 -0.22 1.93 16 3 H 0.14 2.04 6.91 -51.93 -0.36 1.68 16 4 C 0.47 6.43 7.52 36.01 0.27 6.70 16 5 O -0.50 -8.50 15.36 -18.74 -0.29 -8.79 16 6 O -0.52 -5.17 13.33 -39.26 -0.52 -5.70 16 7 N -0.61 -10.64 2.54 -176.45 -0.45 -11.09 16 8 C 0.07 1.12 7.66 59.84 0.46 1.58 16 9 C 0.58 12.42 7.48 -12.42 -0.09 12.32 16 10 O -0.57 -13.28 15.92 5.28 0.08 -13.19 16 11 C -0.28 -6.38 5.51 -104.73 -0.58 -6.96 16 12 C -0.08 -1.81 7.45 -39.61 -0.29 -2.10 16 13 C -0.17 -4.26 8.60 -39.27 -0.34 -4.60 16 14 C 0.13 3.29 5.55 -106.80 -0.59 2.70 16 15 C -0.45 -11.13 9.05 -37.75 -0.34 -11.47 16 16 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 17 C 0.07 1.70 5.26 -17.31 -0.09 1.61 16 18 N -0.78 -18.71 10.82 55.56 0.60 -18.11 16 19 Si 0.92 17.46 29.57 -169.99 -5.03 12.43 16 20 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 21 H -0.28 -5.12 7.11 56.52 0.40 -4.71 16 22 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 23 C -0.23 -5.65 9.73 -39.27 -0.38 -6.03 16 24 C -0.03 -0.60 9.52 -39.61 -0.38 -0.97 16 25 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.65 6.70 -51.93 -0.35 0.30 16 28 H 0.41 2.34 9.10 45.56 0.41 2.75 16 29 H 0.07 1.12 5.92 -51.92 -0.31 0.81 16 30 H 0.05 0.70 6.45 -51.94 -0.34 0.36 16 31 H 0.10 1.80 5.11 -51.93 -0.27 1.53 16 32 H 0.11 2.30 4.41 -52.49 -0.23 2.07 16 33 H 0.12 3.08 6.21 -52.48 -0.33 2.76 16 34 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 35 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 36 H 0.10 2.20 7.82 -52.49 -0.41 1.78 16 LS Contribution 303.57 15.07 4.57 4.57 Total: -1.00 -30.12 303.57 -6.25 -36.37 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -2.98 Total: 10.10 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.24 Total: -6.60 kcal Atomic # 7 Polarization: -29.35 SS G_CDS: 0.15 Total: -29.20 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.73 Total: -27.68 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.12 -6.25 -36.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262096183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.466 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds