Wall clock time and date at job start Mon Mar 30 2020 01:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47523 * 2 1 4 4 C 1.50702 * 109.47350 * 120.00133 * 2 1 3 5 5 O 1.20819 * 120.00271 * 119.99593 * 4 2 1 6 6 O 1.34230 * 119.99811 * 299.99697 * 4 2 1 7 7 N 1.46504 * 109.46867 * 239.99455 * 2 1 3 8 8 C 1.46492 * 120.00287 * 300.00424 * 7 2 1 9 9 C 1.34785 * 119.99666 * 120.00021 * 7 2 1 10 10 O 1.21594 * 119.99587 * 354.93881 * 9 7 2 11 11 C 1.47639 * 120.00166 * 175.20801 * 9 7 2 12 12 C 1.40017 * 119.89376 * 335.01872 * 11 9 7 13 13 C 1.36312 * 120.10262 * 179.75488 * 12 11 9 14 14 C 1.40889 * 119.89323 * 0.51460 * 13 12 11 15 15 C 1.41108 * 120.10285 * 179.71184 * 14 13 12 16 16 H 1.08000 * 120.00653 * 209.05885 * 15 14 13 17 17 C 1.40227 * 119.99807 * 29.06640 * 15 14 13 18 18 N 1.30648 * 120.00175 * 10.36792 * 17 15 14 19 19 Si 1.86802 * 120.00100 * 190.36497 * 17 15 14 20 20 H 1.48506 * 109.46970 * 60.00350 * 19 17 15 21 21 H 1.48504 * 109.47304 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47251 * 300.00317 * 19 17 15 23 23 C 1.40886 * 119.79515 * 359.73956 * 14 13 12 24 24 C 1.36321 * 119.89053 * 359.97438 * 23 14 13 25 25 H 1.09001 * 109.47280 * 300.00040 * 1 2 3 26 26 H 1.09002 * 109.47565 * 60.00193 * 1 2 3 27 27 H 1.09004 * 109.47645 * 180.02562 * 1 2 3 28 28 H 0.96699 * 117.00233 * 179.97438 * 6 4 2 29 29 H 1.09009 * 109.46808 * 275.59336 * 8 7 2 30 30 H 1.08988 * 109.47463 * 35.59394 * 8 7 2 31 31 H 1.09004 * 109.46917 * 155.59996 * 8 7 2 32 32 H 1.07994 * 119.94385 * 0.02562 * 12 11 9 33 33 H 1.08007 * 120.05163 * 180.25344 * 13 12 11 34 34 H 0.96998 * 120.00027 * 179.97438 * 18 17 15 35 35 H 1.07995 * 120.05814 * 179.97438 * 23 14 13 36 36 H 1.07996 * 119.95019 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7269 -1.6928 1.1196 6 8 1.7081 -0.2518 2.4496 7 7 2.0182 -0.6908 -1.1962 8 6 1.6642 -2.0932 -1.4279 9 6 2.7931 -0.0358 -2.0834 10 8 3.0112 1.1518 -1.9397 11 6 3.3722 -0.7589 -3.2330 12 6 3.5795 -2.1414 -3.1551 13 6 4.1093 -2.8142 -4.2157 14 6 4.4584 -2.1144 -5.3876 15 6 5.0128 -2.8054 -6.4859 16 1 5.6898 -2.2981 -7.1572 17 6 4.6845 -4.1508 -6.7059 18 7 3.7187 -4.7074 -6.0244 19 14 5.6279 -5.1473 -7.9733 20 1 7.0656 -5.1848 -7.6031 21 1 5.0916 -6.5315 -8.0138 22 1 5.4771 -4.5181 -9.3099 23 6 4.2529 -0.7224 -5.4593 24 6 3.7171 -0.0592 -4.3956 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.0535 -0.7410 3.2088 29 1 2.3591 -2.7372 -0.8887 30 1 0.6500 -2.2754 -1.0731 31 1 1.7206 -2.3107 -2.4946 32 1 3.3152 -2.6763 -2.2548 33 1 4.2650 -3.8813 -4.1562 34 1 3.4914 -5.6380 -6.1768 35 1 4.5193 -0.1817 -6.3553 36 1 3.5595 1.0079 -4.4494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262096183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:41 Heat of formation + Delta-G solvation = -108.592408 kcal Electronic energy + Delta-G solvation = -21296.655586 eV Core-core repulsion = 17938.495229 eV Total energy + Delta-G solvation = -3358.160356 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.88033 -40.69531 -38.96539 -37.37535 -36.70647 -35.68670 -33.34303 -31.42222 -31.24655 -28.15115 -27.69977 -25.92949 -23.93269 -22.81535 -22.12661 -20.43721 -19.33566 -19.16723 -18.22935 -17.84541 -17.32729 -16.95187 -16.65830 -16.07208 -15.82132 -15.32959 -14.99862 -14.61091 -14.44130 -14.31418 -13.95720 -13.65501 -13.47475 -13.25854 -13.20635 -12.86228 -12.78379 -12.61601 -12.60404 -12.49664 -12.27097 -11.76399 -11.62935 -11.24217 -11.11987 -10.75964 -9.83416 -9.50780 -9.35912 -8.71532 -6.49231 0.41801 1.09261 1.13930 1.39683 1.43141 1.52326 1.64860 1.96469 2.18371 2.32215 2.77034 3.65014 3.71607 3.93032 4.04153 4.19223 4.23180 4.41813 4.45009 4.62245 4.72582 4.74196 4.93068 4.95605 5.04369 5.15196 5.18090 5.29428 5.39972 5.56524 5.62180 5.77135 5.94709 6.00881 6.23094 6.32628 6.56370 6.79450 6.89093 6.92282 7.20749 8.22282 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031894 B = 0.004175 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.706920 B = 6704.795160 C = 7176.050764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.140 3.860 3 H 0.127 0.873 4 C 0.476 3.524 5 O -0.538 6.538 6 O -0.501 6.501 7 N -0.600 5.600 8 C 0.071 3.929 9 C 0.576 3.424 10 O -0.594 6.594 11 C -0.288 4.288 12 C -0.070 4.070 13 C -0.193 4.193 14 C 0.103 3.897 15 C -0.478 4.478 16 H 0.084 0.916 17 C 0.036 3.964 18 N -0.806 5.806 19 Si 0.989 3.011 20 H -0.260 1.260 21 H -0.264 1.264 22 H -0.259 1.259 23 C -0.247 4.247 24 C -0.033 4.033 25 H 0.105 0.895 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.429 0.571 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.114 0.886 34 H 0.295 0.705 35 H 0.107 0.893 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.078 0.956 10.548 12.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.035 3.965 3 H 0.145 0.855 4 C 0.318 3.682 5 O -0.427 6.427 6 O -0.314 6.314 7 N -0.332 5.332 8 C -0.070 4.070 9 C 0.372 3.628 10 O -0.478 6.478 11 C -0.292 4.292 12 C -0.088 4.088 13 C -0.212 4.212 14 C 0.100 3.900 15 C -0.506 4.506 16 H 0.102 0.898 17 C -0.182 4.182 18 N -0.431 5.431 19 Si 0.809 3.191 20 H -0.184 1.184 21 H -0.188 1.188 22 H -0.183 1.183 23 C -0.267 4.267 24 C -0.053 4.053 25 H 0.123 0.877 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.292 0.708 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.152 0.848 33 H 0.132 0.868 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.097 1.274 10.327 12.595 hybrid contribution 0.794 -0.782 -0.097 1.119 sum -6.303 0.492 10.230 12.026 Atomic orbital electron populations 1.22060 0.88715 1.04326 1.05181 1.20653 0.98300 0.97586 0.79960 0.85538 1.23942 0.76399 0.82070 0.85786 1.90723 1.36775 1.27607 1.87628 1.84468 1.71777 1.58868 1.16303 1.47450 1.51101 1.13740 1.20954 1.22442 1.01393 0.80118 1.03077 1.18577 0.76327 0.85712 0.82163 1.90611 1.63274 1.16811 1.77097 1.19080 1.19163 0.94358 0.96591 1.21432 0.96009 0.92675 0.98676 1.21068 1.06977 0.99981 0.93181 1.18164 0.87439 0.91861 0.92556 1.20071 1.24429 0.96407 1.09701 0.89777 1.26878 0.94334 0.98325 0.98627 1.69730 1.22540 1.14822 1.35971 0.85143 0.78999 0.77032 0.77970 1.18448 1.18848 1.18307 1.20902 1.11214 0.95288 0.99271 1.20486 0.94659 0.97944 0.92163 0.87677 0.90624 0.90694 0.70850 0.91958 0.89236 0.89779 0.84833 0.86842 0.89393 0.87524 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.09 71.98 0.65 -2.01 16 2 C 0.14 3.74 3.16 44.24 0.14 3.88 16 3 H 0.13 3.65 6.91 -2.39 -0.02 3.64 16 4 C 0.48 12.02 7.52 71.24 0.54 12.55 16 5 O -0.54 -17.30 15.36 21.98 0.34 -16.96 16 6 O -0.50 -8.33 13.33 -51.41 -0.69 -9.02 16 7 N -0.60 -20.38 2.54 -830.43 -2.11 -22.49 16 8 C 0.07 2.18 7.66 127.77 0.98 3.16 16 9 C 0.58 24.64 7.48 86.72 0.65 25.29 16 10 O -0.59 -27.71 15.92 -4.01 -0.06 -27.78 16 11 C -0.29 -13.36 5.51 -19.93 -0.11 -13.47 16 12 C -0.07 -3.18 7.45 22.25 0.17 -3.01 16 13 C -0.19 -9.75 8.60 22.47 0.19 -9.56 16 14 C 0.10 5.40 5.55 -21.28 -0.12 5.28 16 15 C -0.48 -24.42 9.05 23.46 0.21 -24.21 16 16 H 0.08 4.10 7.87 -2.91 -0.02 4.08 16 17 C 0.04 1.69 5.26 85.35 0.45 2.14 16 18 N -0.81 -38.91 10.82 21.87 0.24 -38.67 16 19 Si 0.99 35.42 29.57 68.60 2.03 37.44 16 20 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 21 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 22 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 23 C -0.25 -12.26 9.73 22.47 0.22 -12.04 16 24 C -0.03 -1.59 9.52 22.25 0.21 -1.38 16 25 H 0.10 1.41 8.11 -2.39 -0.02 1.39 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 1.23 6.70 -2.38 -0.02 1.22 16 28 H 0.43 3.42 9.10 -74.06 -0.67 2.75 16 29 H 0.06 2.00 5.92 -2.38 -0.01 1.99 16 30 H 0.09 2.09 6.45 -2.39 -0.02 2.08 16 31 H 0.08 2.91 5.11 -2.38 -0.01 2.90 16 32 H 0.13 5.44 4.41 -2.91 -0.01 5.43 16 33 H 0.11 5.87 6.21 -2.91 -0.02 5.85 16 34 H 0.29 12.73 8.29 -92.71 -0.77 11.96 16 35 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 36 H 0.11 4.81 7.82 -2.91 -0.02 4.79 16 Total: -1.00 -65.83 303.57 4.39 -61.44 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.46 Total: 29.41 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 4.18 Total: -13.38 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -1.87 Total: -61.16 kcal Atomic # 8 Polarization: -53.34 SS G_CDS: -0.41 Total: -53.75 kcal Atomic # 14 Polarization: 35.42 SS G_CDS: 2.03 Total: 37.44 kcal Total: -65.83 4.39 -61.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262096183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.154 kcal (2) G-P(sol) polarization free energy of solvation -65.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds