Wall clock time and date at job start Mon Mar 30 2020 01:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46685 * 2 1 4 4 C 1.46502 * 119.99887 * 280.70011 * 3 2 1 5 5 C 1.50703 * 109.47157 * 270.00399 * 4 3 2 6 6 O 1.20828 * 119.99993 * 359.97438 * 5 4 3 7 7 O 1.34231 * 119.99942 * 179.97438 * 5 4 3 8 8 C 1.34770 * 120.00454 * 100.70220 * 3 2 1 9 9 O 1.21584 * 120.00489 * 186.64099 * 8 3 2 10 10 C 1.47651 * 119.99724 * 6.64121 * 8 3 2 11 11 C 1.40011 * 119.89179 * 148.74296 * 10 8 3 12 12 C 1.36318 * 120.10391 * 180.25202 * 11 10 8 13 13 C 1.40884 * 119.89154 * 359.53061 * 12 11 10 14 14 C 1.41110 * 120.10796 * 180.22739 * 13 12 11 15 15 H 1.08000 * 120.00458 * 209.69847 * 14 13 12 16 16 C 1.40224 * 119.99548 * 29.69374 * 14 13 12 17 17 N 1.30642 * 120.00417 * 10.75879 * 16 14 13 18 18 Si 1.86804 * 119.99971 * 190.75873 * 16 14 13 19 19 H 1.48503 * 109.46844 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47141 * 119.99899 * 18 16 14 21 21 H 1.48497 * 109.47098 * 239.99992 * 18 16 14 22 22 C 1.40891 * 119.79471 * 0.48979 * 13 12 11 23 23 C 1.36322 * 119.89001 * 359.73915 * 22 13 12 24 24 H 1.09000 * 109.46995 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47508 * 300.00289 * 1 2 3 26 26 H 1.08999 * 109.47345 * 60.00572 * 1 2 3 27 27 H 1.09004 * 109.47277 * 240.00021 * 2 1 3 28 28 H 1.08999 * 109.47345 * 119.99428 * 2 1 3 29 29 H 1.08998 * 109.47205 * 30.00178 * 4 3 2 30 30 H 1.08992 * 109.47422 * 150.00280 * 4 3 2 31 31 H 0.96701 * 116.99462 * 179.97438 * 7 5 4 32 32 H 1.07998 * 119.94981 * 359.97438 * 11 10 8 33 33 H 1.07993 * 120.05596 * 179.72300 * 12 11 10 34 34 H 0.96996 * 120.00395 * 180.02562 * 17 16 14 35 35 H 1.08005 * 120.05737 * 179.70949 * 22 13 12 36 36 H 1.08000 * 119.94497 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.0403 2.1504 -1.2467 5 6 3.3641 1.9488 -1.9380 6 8 4.2033 1.2361 -1.4402 7 8 3.6109 2.5609 -3.1069 8 6 2.4472 1.9445 1.1468 9 8 2.7382 3.1247 1.1729 10 6 2.5638 1.1282 2.3716 11 6 3.5472 1.4311 3.3211 12 6 3.6620 0.6772 4.4509 13 6 2.7828 -0.4022 4.6671 14 6 2.8945 -1.1827 5.8374 15 1 2.6088 -2.2241 5.8214 16 6 3.3766 -0.6061 7.0212 17 7 3.5232 0.6894 7.1044 18 14 3.8093 -1.6904 8.4795 19 1 3.5547 -3.1117 8.1323 20 1 5.2438 -1.5128 8.8200 21 1 2.9728 -1.3088 9.6456 22 6 1.7951 -0.7035 3.7086 23 6 1.6910 0.0533 2.5795 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.2349 1.8103 -1.8977 30 1 1.9045 3.2085 -1.0233 31 1 4.4743 2.4014 -3.5122 32 1 4.2187 2.2607 3.1559 33 1 4.4237 0.9088 5.1806 34 1 3.8570 1.0882 7.9231 35 1 1.1219 -1.5329 3.8678 36 1 0.9345 -0.1771 1.8440 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262146835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:00 Heat of formation + Delta-G solvation = -81.981162 kcal Electronic energy + Delta-G solvation = -21293.736356 eV Core-core repulsion = 17936.729950 eV Total energy + Delta-G solvation = -3357.006406 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.46982 -39.31750 -37.17474 -36.13667 -35.61055 -33.85206 -31.41188 -30.17471 -29.37795 -28.14396 -25.65559 -23.22161 -22.40441 -21.35717 -20.80381 -18.84269 -18.12421 -17.66318 -16.75257 -16.55721 -15.87327 -15.59803 -15.33740 -14.69224 -14.41846 -13.87212 -13.37580 -13.23967 -12.94245 -12.68143 -12.47771 -12.20785 -12.04837 -11.79918 -11.66100 -11.44512 -11.42070 -11.21016 -11.15969 -10.73200 -10.62172 -10.45510 -9.92024 -9.45015 -9.38421 -9.04966 -8.53497 -7.65865 -7.46826 -6.92006 -4.58324 2.23486 2.27505 2.76692 2.92849 2.98484 3.00774 3.03872 3.50466 3.76514 3.81761 4.54714 4.90403 5.07509 5.23232 5.27433 5.42977 5.47305 5.57076 5.78433 5.85198 6.00420 6.10070 6.26503 6.33203 6.49428 6.70981 6.84173 6.87308 7.04170 7.11382 7.46591 7.57540 7.68166 7.88067 7.92603 7.99145 8.10732 8.46167 8.67258 8.76952 8.85426 10.00063 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.032243 B = 0.004180 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.191685 B = 6696.722507 C = 7063.973144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.074 3.926 3 N -0.604 5.604 4 C 0.127 3.873 5 C 0.455 3.545 6 O -0.500 6.500 7 O -0.522 6.522 8 C 0.581 3.419 9 O -0.563 6.563 10 C -0.271 4.271 11 C -0.040 4.040 12 C -0.171 4.171 13 C 0.128 3.872 14 C -0.448 4.448 15 H 0.084 0.916 16 C 0.072 3.928 17 N -0.780 5.780 18 Si 0.915 3.085 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.272 1.272 22 C -0.230 4.230 23 C -0.083 4.083 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.130 0.870 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.406 0.594 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.285 0.715 35 H 0.099 0.901 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.758 -1.393 -12.254 12.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.048 4.048 3 N -0.338 5.338 4 C 0.001 3.999 5 C 0.295 3.705 6 O -0.386 6.386 7 O -0.334 6.334 8 C 0.378 3.622 9 O -0.443 6.443 10 C -0.275 4.275 11 C -0.060 4.060 12 C -0.191 4.191 13 C 0.125 3.875 14 C -0.477 4.477 15 H 0.102 0.898 16 C -0.148 4.148 17 N -0.404 5.404 18 Si 0.739 3.261 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.197 1.197 22 C -0.250 4.250 23 C -0.102 4.102 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.147 0.853 29 H 0.132 0.868 30 H 0.142 0.858 31 H 0.265 0.735 32 H 0.114 0.886 33 H 0.140 0.860 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.682 -0.714 -11.728 12.313 hybrid contribution 0.813 -0.482 0.326 1.000 sum -2.869 -1.196 -11.401 11.817 Atomic orbital electron populations 1.22280 0.96094 1.02496 1.02495 1.22505 0.93881 0.82736 1.05664 1.47559 1.65858 1.14368 1.06002 1.20680 0.91268 1.01055 0.86861 1.24498 0.91134 0.76360 0.78513 1.90754 1.47349 1.36139 1.64380 1.84528 1.42742 1.69171 1.36953 1.18809 0.73765 0.86684 0.82971 1.90651 1.51316 1.16510 1.85794 1.18797 1.07741 1.03595 0.97349 1.20426 0.95708 0.96940 0.92883 1.21033 1.01713 0.99414 0.96919 1.17815 0.87833 0.90671 0.91215 1.19822 1.36155 0.98067 0.93637 0.89838 1.26064 0.92672 0.95223 1.00852 1.69723 1.31274 1.11133 1.28315 0.86147 0.79020 0.81023 0.79942 1.18215 1.19522 1.19740 1.20765 1.02278 1.04163 0.97769 1.21224 0.98028 0.93974 0.96924 0.91205 0.91364 0.92594 0.91816 0.85309 0.86795 0.85798 0.73534 0.88599 0.86032 0.90388 0.88331 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.16 37.16 0.34 -1.62 16 2 C 0.07 1.05 5.59 -4.04 -0.02 1.03 16 3 N -0.60 -10.13 1.98 -176.24 -0.35 -10.48 16 4 C 0.13 1.70 6.04 -5.19 -0.03 1.67 16 5 C 0.46 6.53 8.40 36.01 0.30 6.83 16 6 O -0.50 -9.25 17.19 -18.75 -0.32 -9.58 16 7 O -0.52 -5.54 13.42 -39.26 -0.53 -6.06 16 8 C 0.58 12.55 7.43 -12.42 -0.09 12.46 16 9 O -0.56 -13.58 16.27 5.29 0.09 -13.49 16 10 C -0.27 -6.25 5.59 -104.73 -0.59 -6.84 16 11 C -0.04 -1.00 9.53 -39.61 -0.38 -1.38 16 12 C -0.17 -4.44 8.59 -39.27 -0.34 -4.77 16 13 C 0.13 3.26 5.54 -106.80 -0.59 2.67 16 14 C -0.45 -11.23 9.05 -37.75 -0.34 -11.57 16 15 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 16 C 0.07 1.72 5.25 -17.31 -0.09 1.62 16 17 N -0.78 -19.48 10.89 55.56 0.61 -18.88 16 18 Si 0.91 17.71 29.57 -169.99 -5.03 12.68 16 19 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 C -0.23 -5.26 9.73 -39.27 -0.38 -5.64 16 23 C -0.08 -1.75 7.38 -39.61 -0.29 -2.04 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.87 7.12 -51.93 -0.37 0.50 16 26 H 0.06 0.53 7.73 -51.93 -0.40 0.13 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.13 2.11 3.89 -52.72 -0.21 1.91 16 29 H 0.11 1.05 7.66 -51.93 -0.40 0.65 16 30 H 0.12 1.69 7.34 -51.93 -0.38 1.31 16 31 H 0.41 2.68 9.10 45.56 0.41 3.10 16 32 H 0.10 2.36 7.93 -52.49 -0.42 1.95 16 33 H 0.12 3.23 6.28 -52.49 -0.33 2.90 16 34 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 35 H 0.10 2.05 8.06 -52.48 -0.42 1.62 16 36 H 0.12 2.12 2.81 -52.49 -0.15 1.97 16 LS Contribution 308.27 15.07 4.65 4.65 Total: -1.00 -32.10 308.27 -6.44 -38.54 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -3.05 Total: 10.20 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -2.50 Total: -7.58 kcal Atomic # 7 Polarization: -29.62 SS G_CDS: 0.26 Total: -29.36 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.76 Total: -29.13 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.10 -6.44 -38.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262146835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.442 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds