Wall clock time and date at job start Mon Mar 30 2020 01:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46685 * 2 1 4 4 C 1.46502 * 119.99887 * 280.70011 * 3 2 1 5 5 C 1.50703 * 109.47157 * 270.00399 * 4 3 2 6 6 O 1.20828 * 119.99993 * 359.97438 * 5 4 3 7 7 O 1.34231 * 119.99942 * 179.97438 * 5 4 3 8 8 C 1.34770 * 120.00454 * 100.70220 * 3 2 1 9 9 O 1.21584 * 120.00489 * 186.64099 * 8 3 2 10 10 C 1.47651 * 119.99724 * 6.64121 * 8 3 2 11 11 C 1.40011 * 119.89179 * 148.74296 * 10 8 3 12 12 C 1.36318 * 120.10391 * 180.25202 * 11 10 8 13 13 C 1.40884 * 119.89154 * 359.53061 * 12 11 10 14 14 C 1.41110 * 120.10796 * 180.22739 * 13 12 11 15 15 H 1.08000 * 120.00458 * 209.69847 * 14 13 12 16 16 C 1.40224 * 119.99548 * 29.69374 * 14 13 12 17 17 N 1.30642 * 120.00417 * 10.75879 * 16 14 13 18 18 Si 1.86804 * 119.99971 * 190.75873 * 16 14 13 19 19 H 1.48503 * 109.46844 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47141 * 119.99899 * 18 16 14 21 21 H 1.48497 * 109.47098 * 239.99992 * 18 16 14 22 22 C 1.40891 * 119.79471 * 0.48979 * 13 12 11 23 23 C 1.36322 * 119.89001 * 359.73915 * 22 13 12 24 24 H 1.09000 * 109.46995 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47508 * 300.00289 * 1 2 3 26 26 H 1.08999 * 109.47345 * 60.00572 * 1 2 3 27 27 H 1.09004 * 109.47277 * 240.00021 * 2 1 3 28 28 H 1.08999 * 109.47345 * 119.99428 * 2 1 3 29 29 H 1.08998 * 109.47205 * 30.00178 * 4 3 2 30 30 H 1.08992 * 109.47422 * 150.00280 * 4 3 2 31 31 H 0.96701 * 116.99462 * 179.97438 * 7 5 4 32 32 H 1.07998 * 119.94981 * 359.97438 * 11 10 8 33 33 H 1.07993 * 120.05596 * 179.72300 * 12 11 10 34 34 H 0.96996 * 120.00395 * 180.02562 * 17 16 14 35 35 H 1.08005 * 120.05737 * 179.70949 * 22 13 12 36 36 H 1.08000 * 119.94497 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.0403 2.1504 -1.2467 5 6 3.3641 1.9488 -1.9380 6 8 4.2033 1.2361 -1.4402 7 8 3.6109 2.5609 -3.1069 8 6 2.4472 1.9445 1.1468 9 8 2.7382 3.1247 1.1729 10 6 2.5638 1.1282 2.3716 11 6 3.5472 1.4311 3.3211 12 6 3.6620 0.6772 4.4509 13 6 2.7828 -0.4022 4.6671 14 6 2.8945 -1.1827 5.8374 15 1 2.6088 -2.2241 5.8214 16 6 3.3766 -0.6061 7.0212 17 7 3.5232 0.6894 7.1044 18 14 3.8093 -1.6904 8.4795 19 1 3.5547 -3.1117 8.1323 20 1 5.2438 -1.5128 8.8200 21 1 2.9728 -1.3088 9.6456 22 6 1.7951 -0.7035 3.7086 23 6 1.6910 0.0533 2.5795 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.2349 1.8103 -1.8977 30 1 1.9045 3.2085 -1.0233 31 1 4.4743 2.4014 -3.5122 32 1 4.2187 2.2607 3.1559 33 1 4.4237 0.9088 5.1806 34 1 3.8570 1.0882 7.9231 35 1 1.1219 -1.5329 3.8678 36 1 0.9345 -0.1771 1.8440 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262146835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:00 Heat of formation + Delta-G solvation = -102.796261 kcal Electronic energy + Delta-G solvation = -21294.638967 eV Core-core repulsion = 17936.729950 eV Total energy + Delta-G solvation = -3357.909017 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.76882 -40.72065 -38.93685 -37.37619 -36.91223 -35.63461 -32.72188 -31.96181 -31.01246 -29.51332 -27.38068 -24.46081 -23.75309 -23.10268 -22.36328 -20.32339 -19.46776 -19.20480 -18.23779 -17.73188 -17.28594 -17.20048 -16.69196 -16.18879 -15.89498 -15.43000 -14.94288 -14.82297 -14.37614 -14.16307 -13.72748 -13.61944 -13.40948 -13.28704 -13.20543 -12.82080 -12.80617 -12.61257 -12.49431 -12.29705 -11.92881 -11.83062 -11.64781 -11.22055 -11.18508 -10.72781 -9.90808 -9.50929 -9.31906 -8.71314 -6.48576 0.45746 1.11269 1.15854 1.38044 1.40728 1.55574 1.60635 2.07411 2.17890 2.39778 2.75637 3.63063 3.78796 3.99327 4.21629 4.25763 4.33035 4.35714 4.43843 4.46255 4.66419 4.88710 4.96982 5.02470 5.05105 5.18327 5.26377 5.41795 5.48993 5.58723 5.60346 5.75916 5.92912 6.01641 6.20650 6.36609 6.57635 6.79633 6.89985 6.94465 7.22998 8.23716 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.032243 B = 0.004180 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.191685 B = 6696.722507 C = 7063.973144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.068 3.932 3 N -0.596 5.596 4 C 0.121 3.879 5 C 0.462 3.538 6 O -0.551 6.551 7 O -0.506 6.506 8 C 0.577 3.423 9 O -0.599 6.599 10 C -0.284 4.284 11 C -0.058 4.058 12 C -0.193 4.193 13 C 0.100 3.900 14 C -0.477 4.477 15 H 0.092 0.908 16 C 0.030 3.970 17 N -0.818 5.818 18 Si 0.991 3.009 19 H -0.250 1.250 20 H -0.267 1.267 21 H -0.265 1.265 22 C -0.240 4.240 23 C -0.066 4.066 24 H 0.094 0.906 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.168 0.832 30 H 0.123 0.877 31 H 0.426 0.574 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.292 0.708 35 H 0.121 0.879 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 -2.751 -14.055 15.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.053 4.053 3 N -0.328 5.328 4 C -0.004 4.004 5 C 0.304 3.696 6 O -0.441 6.441 7 O -0.319 6.319 8 C 0.372 3.628 9 O -0.482 6.482 10 C -0.288 4.288 11 C -0.077 4.077 12 C -0.213 4.213 13 C 0.097 3.903 14 C -0.506 4.506 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.443 5.443 18 Si 0.811 3.189 19 H -0.173 1.173 20 H -0.192 1.192 21 H -0.190 1.190 22 C -0.259 4.259 23 C -0.084 4.084 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.185 0.815 30 H 0.140 0.860 31 H 0.288 0.712 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.139 0.861 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.532 -2.080 -13.607 14.836 hybrid contribution 1.374 0.008 0.654 1.522 sum -4.158 -2.072 -12.953 13.761 Atomic orbital electron populations 1.22252 0.93129 1.04364 1.03047 1.22650 0.96138 0.81027 1.05489 1.47499 1.64076 1.15428 1.05804 1.21074 0.92562 1.00791 0.85941 1.24579 0.90755 0.75351 0.78866 1.90755 1.48857 1.38618 1.65844 1.84473 1.44207 1.67912 1.35348 1.18602 0.74064 0.86053 0.84053 1.90621 1.53146 1.17851 1.86601 1.19140 1.07319 1.04421 0.97942 1.20492 0.96733 0.96868 0.93642 1.20931 1.02360 1.00835 0.97149 1.18183 0.88615 0.90896 0.92574 1.20138 1.37619 0.98553 0.94244 0.88972 1.27002 0.91767 0.96374 1.03522 1.69800 1.31963 1.12982 1.29518 0.85015 0.78664 0.79184 0.76031 1.17329 1.19213 1.18969 1.21072 1.02001 1.05134 0.97733 1.21656 0.97788 0.92132 0.96832 0.88699 0.92948 0.89898 0.89526 0.87924 0.81500 0.85961 0.71245 0.89785 0.87971 0.89727 0.86093 0.81589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 9.16 71.98 0.66 -2.37 16 2 C 0.07 1.71 5.59 86.38 0.48 2.19 16 3 N -0.60 -18.81 1.98 -829.78 -1.64 -20.45 16 4 C 0.12 2.86 6.04 85.63 0.52 3.37 16 5 C 0.46 12.24 8.40 71.24 0.60 12.83 16 6 O -0.55 -19.90 17.19 21.96 0.38 -19.52 16 7 O -0.51 -9.23 13.42 -51.43 -0.69 -9.92 16 8 C 0.58 24.96 7.43 86.73 0.64 25.60 16 9 O -0.60 -29.45 16.27 -3.98 -0.06 -29.52 16 10 C -0.28 -13.39 5.59 -19.93 -0.11 -13.50 16 11 C -0.06 -3.06 9.53 22.25 0.21 -2.85 16 12 C -0.19 -10.61 8.59 22.47 0.19 -10.42 16 13 C 0.10 5.29 5.54 -21.28 -0.12 5.17 16 14 C -0.48 -24.43 9.05 23.46 0.21 -24.22 16 15 H 0.09 4.39 7.87 -2.91 -0.02 4.36 16 16 C 0.03 1.45 5.25 85.35 0.45 1.90 16 17 N -0.82 -42.40 10.89 21.87 0.24 -42.17 16 18 Si 0.99 36.44 29.57 68.60 2.03 38.47 16 19 H -0.25 -8.76 7.11 99.48 0.71 -8.06 16 20 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 21 H -0.27 -9.36 7.11 99.48 0.71 -8.66 16 22 C -0.24 -10.96 9.73 22.47 0.22 -10.74 16 23 C -0.07 -2.75 7.38 22.25 0.16 -2.59 16 24 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.05 1.13 7.12 -2.39 -0.02 1.12 16 26 H 0.08 1.08 7.73 -2.39 -0.02 1.06 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.10 3.15 3.89 -3.13 -0.01 3.13 16 29 H 0.17 2.17 7.66 -2.39 -0.02 2.15 16 30 H 0.12 3.05 7.34 -2.39 -0.02 3.04 16 31 H 0.43 4.46 9.10 -74.06 -0.67 3.78 16 32 H 0.08 4.48 7.93 -2.91 -0.02 4.46 16 33 H 0.10 5.86 6.28 -2.91 -0.02 5.85 16 34 H 0.29 13.63 8.29 -92.71 -0.77 12.86 16 35 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 36 H 0.17 5.33 2.81 -2.91 -0.01 5.32 16 Total: -1.00 -74.10 308.27 4.83 -69.27 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.46 Total: 29.45 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 4.12 Total: -15.61 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -1.40 Total: -62.61 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -0.38 Total: -58.96 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Total: -74.10 4.83 -69.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262146835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.526 kcal (2) G-P(sol) polarization free energy of solvation -74.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds