Wall clock time and date at job start Mon Mar 30 2020 01:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46821 * 2 1 4 4 C 1.53006 * 109.46901 * 119.99175 * 2 1 3 5 5 N 1.46501 * 109.47066 * 295.00030 * 4 2 1 6 6 C 1.34780 * 119.99561 * 180.02562 * 5 4 2 7 7 O 1.21540 * 120.00165 * 359.97438 * 6 5 4 8 8 C 1.47889 * 119.99785 * 180.02562 * 6 5 4 9 9 C 1.39924 * 120.02310 * 359.72189 * 8 6 5 10 10 C 1.38330 * 120.35704 * 179.78398 * 9 8 6 11 11 C 1.37750 * 120.40865 * 0.47589 * 10 9 8 12 12 C 1.40750 * 120.04253 * 359.78043 * 11 10 9 13 13 C 1.41440 * 120.17774 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99967 * 334.92621 * 13 12 11 15 15 C 1.39936 * 119.99812 * 154.93006 * 13 12 11 16 16 N 1.30824 * 119.99926 * 342.58513 * 15 13 12 17 17 Si 1.86800 * 119.99697 * 162.58687 * 15 13 12 18 18 H 1.48506 * 109.47339 * 90.00280 * 17 15 13 19 19 H 1.48507 * 109.46701 * 209.99479 * 17 15 13 20 20 H 1.48493 * 109.47327 * 329.99819 * 17 15 13 21 21 C 1.38989 * 120.02685 * 179.97438 * 8 6 5 22 22 C 1.50694 * 109.47433 * 239.99060 * 2 1 3 23 23 O 1.20825 * 120.00223 * 240.00031 * 22 2 1 24 24 O 1.34233 * 119.99765 * 59.99969 * 22 2 1 25 25 H 1.09003 * 109.47071 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47618 * 300.00463 * 1 2 3 27 27 H 1.09000 * 109.47023 * 60.00773 * 1 2 3 28 28 H 1.09001 * 109.46769 * 175.00097 * 4 2 1 29 29 H 1.08999 * 109.47302 * 55.00277 * 4 2 1 30 30 H 0.96999 * 120.00026 * 0.28093 * 5 4 2 31 31 H 1.08000 * 119.82111 * 359.97438 * 9 8 6 32 32 H 1.07998 * 119.79465 * 180.23172 * 10 9 8 33 33 H 1.08009 * 119.97685 * 179.76221 * 11 10 9 34 34 H 0.97002 * 119.99690 * 180.02562 * 16 15 13 35 35 H 1.07996 * 120.20057 * 359.96283 * 21 8 6 36 36 H 0.96698 * 117.00079 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6524 0.0357 2.4424 6 6 1.9964 -0.4126 3.6660 7 8 2.6277 -1.4450 3.7797 8 6 1.6046 0.3510 4.8704 9 6 0.8819 1.5420 4.7399 10 6 0.5081 2.2594 5.8619 11 6 0.8511 1.8152 7.1199 12 6 1.5826 0.6222 7.2707 13 6 1.9359 0.1631 8.5610 14 1 2.0232 0.8636 9.3783 15 6 2.1724 -1.1989 8.7786 16 7 1.7487 -2.0829 7.9123 17 14 3.0930 -1.7546 10.3060 18 1 2.1252 -2.0014 11.4050 19 1 3.8344 -3.0066 10.0090 20 1 4.0512 -0.6977 10.7184 21 6 1.9586 -0.1111 6.1325 22 6 2.0324 -0.7106 -1.2303 23 8 2.7271 -1.6929 -1.1193 24 8 1.7081 -0.2521 -2.4495 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 3.1263 -0.7993 1.2058 29 1 1.6054 -1.7197 1.2955 30 1 1.1450 0.8574 2.3519 31 1 0.6118 1.9014 3.7579 32 1 -0.0529 3.1756 5.7508 33 1 0.5589 2.3829 7.9910 34 1 1.9124 -3.0270 8.0633 35 1 2.5194 -1.0280 6.2378 36 1 2.0542 -0.7409 -3.2087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262476735.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:20 Heat of formation + Delta-G solvation = -121.738669 kcal Electronic energy + Delta-G solvation = -20586.516078 eV Core-core repulsion = 17227.785657 eV Total energy + Delta-G solvation = -3358.730421 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.67784 -39.20463 -37.14226 -36.47297 -35.58231 -33.76606 -32.44535 -30.11817 -29.44813 -26.73097 -25.33509 -24.63435 -22.26438 -21.01525 -20.53597 -19.64335 -18.29472 -17.81718 -16.88548 -16.24954 -16.05267 -15.24972 -15.00626 -14.89226 -14.64322 -13.86013 -13.79555 -13.60053 -13.16169 -12.87386 -12.63393 -12.53445 -12.36235 -11.85347 -11.70014 -11.55297 -11.38132 -11.15172 -11.06874 -10.76373 -10.69224 -10.50265 -10.05244 -9.70830 -9.21998 -9.06467 -8.72785 -7.64722 -7.53350 -6.80634 -4.42417 1.94311 2.19232 2.61731 2.80493 3.08003 3.10764 3.16058 3.77070 3.85067 3.92180 4.31821 4.56613 4.64127 4.76905 5.10289 5.42127 5.48151 5.58512 5.64536 5.72957 5.89648 5.98290 6.07990 6.21701 6.24572 6.70239 6.76481 6.97214 6.99747 7.19951 7.36559 7.61498 7.67891 7.73178 7.90586 8.05335 8.17375 8.49205 8.79261 8.82106 8.91908 10.14124 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.028480 B = 0.003730 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.910199 B = 7504.927877 C = 8296.209381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.117 0.883 4 C 0.136 3.864 5 N -0.737 5.737 6 C 0.565 3.435 7 O -0.541 6.541 8 C -0.127 4.127 9 C -0.219 4.219 10 C -0.097 4.097 11 C -0.212 4.212 12 C 0.099 3.901 13 C -0.460 4.460 14 H 0.081 0.919 15 C 0.073 3.927 16 N -0.783 5.783 17 Si 0.910 3.090 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.260 1.260 21 C -0.091 4.091 22 C 0.488 3.512 23 O -0.507 6.507 24 O -0.516 6.516 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.399 0.601 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.285 0.715 35 H 0.134 0.866 36 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 4.714 -14.461 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 H 0.135 0.865 4 C 0.011 3.989 5 N -0.393 5.393 6 C 0.355 3.645 7 O -0.419 6.419 8 C -0.131 4.131 9 C -0.239 4.239 10 C -0.115 4.115 11 C -0.232 4.232 12 C 0.097 3.903 13 C -0.489 4.489 14 H 0.099 0.901 15 C -0.146 4.146 16 N -0.407 5.407 17 Si 0.734 3.266 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.184 1.184 21 C -0.111 4.111 22 C 0.329 3.671 23 O -0.394 6.394 24 O -0.328 6.328 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.235 0.765 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -1.945 3.621 -14.054 14.642 hybrid contribution 0.289 -0.244 -0.013 0.379 sum -1.655 3.376 -14.067 14.561 Atomic orbital electron populations 1.21824 0.91219 1.03611 1.03743 1.21187 0.99039 1.01484 0.89724 0.86536 1.21017 1.00832 0.95167 0.81862 1.45891 1.59736 1.28331 1.05315 1.18843 0.78049 0.84573 0.82990 1.90717 1.40007 1.24460 1.86681 1.19442 1.04560 0.96675 0.92390 1.20320 1.09185 0.97888 0.96551 1.20429 0.99914 0.98125 0.93068 1.21104 1.05535 1.01081 0.95490 1.17598 0.88823 0.90725 0.93186 1.19585 1.41169 0.92713 0.95393 0.90070 1.25968 0.93639 0.96753 0.98259 1.69783 1.33137 1.03249 1.34533 0.86282 0.80246 0.78928 0.81151 1.19447 1.19933 1.18378 1.21638 0.99427 1.00710 0.89368 1.23205 0.76856 0.82426 0.84638 1.90776 1.35501 1.25960 1.87186 1.84516 1.72358 1.59078 1.16801 0.91627 0.90421 0.90926 0.90681 0.90747 0.76510 0.89267 0.88891 0.88611 0.90395 0.84858 0.73079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.00 37.16 0.33 -0.89 16 2 C -0.09 -0.93 2.87 -91.77 -0.26 -1.20 16 3 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.14 1.92 4.41 -4.04 -0.02 1.91 16 5 N -0.74 -11.71 5.24 -61.23 -0.32 -12.03 16 6 C 0.56 12.26 7.77 -12.31 -0.10 12.17 16 7 O -0.54 -13.76 16.33 5.33 0.09 -13.67 16 8 C -0.13 -2.97 5.87 -105.04 -0.62 -3.58 16 9 C -0.22 -4.46 9.55 -38.92 -0.37 -4.83 16 10 C -0.10 -2.02 10.01 -39.73 -0.40 -2.42 16 11 C -0.21 -4.97 9.78 -38.81 -0.38 -5.35 16 12 C 0.10 2.60 5.57 -106.87 -0.59 2.01 16 13 C -0.46 -12.02 9.05 -37.73 -0.34 -12.36 16 14 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 15 C 0.07 1.84 5.14 -17.35 -0.09 1.75 16 16 N -0.78 -20.74 10.97 55.55 0.61 -20.13 16 17 Si 0.91 18.76 29.59 -169.99 -5.03 13.72 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 C -0.09 -2.42 8.23 -38.45 -0.32 -2.74 16 22 C 0.49 5.14 7.63 36.00 0.27 5.41 16 23 O -0.51 -7.23 16.68 -18.75 -0.31 -7.54 16 24 O -0.52 -3.82 13.33 -39.27 -0.52 -4.34 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.64 7.18 -51.93 -0.37 0.26 16 27 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 28 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.40 5.19 5.66 -40.82 -0.23 4.96 16 31 H 0.09 1.45 6.38 -52.49 -0.33 1.11 16 32 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 34 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 35 H 0.13 3.85 5.76 -52.49 -0.30 3.54 16 36 H 0.41 1.38 9.10 45.56 0.41 1.80 16 LS Contribution 315.22 15.07 4.75 4.75 Total: -1.00 -32.52 315.22 -6.94 -39.46 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -3.32 Total: 9.90 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -2.87 Total: -10.12 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.29 Total: -32.16 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.75 Total: -25.56 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.52 -6.94 -39.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262476735.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.277 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds