Wall clock time and date at job start Mon Mar 30 2020 01:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46821 * 2 1 4 4 C 1.53006 * 109.46901 * 119.99175 * 2 1 3 5 5 N 1.46501 * 109.47066 * 295.00030 * 4 2 1 6 6 C 1.34780 * 119.99561 * 180.02562 * 5 4 2 7 7 O 1.21540 * 120.00165 * 359.97438 * 6 5 4 8 8 C 1.47889 * 119.99785 * 180.02562 * 6 5 4 9 9 C 1.39924 * 120.02310 * 359.72189 * 8 6 5 10 10 C 1.38330 * 120.35704 * 179.78398 * 9 8 6 11 11 C 1.37750 * 120.40865 * 0.47589 * 10 9 8 12 12 C 1.40750 * 120.04253 * 359.78043 * 11 10 9 13 13 C 1.41440 * 120.17774 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99967 * 334.92621 * 13 12 11 15 15 C 1.39936 * 119.99812 * 154.93006 * 13 12 11 16 16 N 1.30824 * 119.99926 * 342.58513 * 15 13 12 17 17 Si 1.86800 * 119.99697 * 162.58687 * 15 13 12 18 18 H 1.48506 * 109.47339 * 90.00280 * 17 15 13 19 19 H 1.48507 * 109.46701 * 209.99479 * 17 15 13 20 20 H 1.48493 * 109.47327 * 329.99819 * 17 15 13 21 21 C 1.38989 * 120.02685 * 179.97438 * 8 6 5 22 22 C 1.50694 * 109.47433 * 239.99060 * 2 1 3 23 23 O 1.20825 * 120.00223 * 240.00031 * 22 2 1 24 24 O 1.34233 * 119.99765 * 59.99969 * 22 2 1 25 25 H 1.09003 * 109.47071 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47618 * 300.00463 * 1 2 3 27 27 H 1.09000 * 109.47023 * 60.00773 * 1 2 3 28 28 H 1.09001 * 109.46769 * 175.00097 * 4 2 1 29 29 H 1.08999 * 109.47302 * 55.00277 * 4 2 1 30 30 H 0.96999 * 120.00026 * 0.28093 * 5 4 2 31 31 H 1.08000 * 119.82111 * 359.97438 * 9 8 6 32 32 H 1.07998 * 119.79465 * 180.23172 * 10 9 8 33 33 H 1.08009 * 119.97685 * 179.76221 * 11 10 9 34 34 H 0.97002 * 119.99690 * 180.02562 * 16 15 13 35 35 H 1.07996 * 120.20057 * 359.96283 * 21 8 6 36 36 H 0.96698 * 117.00079 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6524 0.0357 2.4424 6 6 1.9964 -0.4126 3.6660 7 8 2.6277 -1.4450 3.7797 8 6 1.6046 0.3510 4.8704 9 6 0.8819 1.5420 4.7399 10 6 0.5081 2.2594 5.8619 11 6 0.8511 1.8152 7.1199 12 6 1.5826 0.6222 7.2707 13 6 1.9359 0.1631 8.5610 14 1 2.0232 0.8636 9.3783 15 6 2.1724 -1.1989 8.7786 16 7 1.7487 -2.0829 7.9123 17 14 3.0930 -1.7546 10.3060 18 1 2.1252 -2.0014 11.4050 19 1 3.8344 -3.0066 10.0090 20 1 4.0512 -0.6977 10.7184 21 6 1.9586 -0.1111 6.1325 22 6 2.0324 -0.7106 -1.2303 23 8 2.7271 -1.6929 -1.1193 24 8 1.7081 -0.2521 -2.4495 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 3.1263 -0.7993 1.2058 29 1 1.6054 -1.7197 1.2955 30 1 1.1450 0.8574 2.3519 31 1 0.6118 1.9014 3.7579 32 1 -0.0529 3.1756 5.7508 33 1 0.5589 2.3829 7.9910 34 1 1.9124 -3.0270 8.0633 35 1 2.5194 -1.0280 6.2378 36 1 2.0542 -0.7409 -3.2087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262476735.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:20 Heat of formation + Delta-G solvation = -144.858716 kcal Electronic energy + Delta-G solvation = -20587.518638 eV Core-core repulsion = 17227.785657 eV Total energy + Delta-G solvation = -3359.732981 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.57921 -40.81254 -38.86025 -37.34611 -36.79003 -35.59371 -33.75579 -31.84501 -31.25273 -27.87516 -27.06233 -25.68763 -23.83188 -22.77595 -21.59861 -21.18475 -19.54183 -19.10482 -17.96151 -17.84695 -17.08406 -16.81865 -16.50929 -16.37551 -16.19777 -15.38640 -15.00982 -14.91338 -14.52139 -14.40535 -14.24788 -13.84670 -13.47846 -13.17711 -12.94240 -12.77327 -12.67147 -12.54356 -12.46273 -12.24052 -12.16117 -11.91527 -11.55220 -11.49303 -11.05862 -10.84188 -10.23049 -9.45895 -9.36450 -8.65675 -6.37202 0.38385 1.02624 1.13388 1.36563 1.46899 1.52749 1.73287 2.09171 2.19782 2.50475 2.79755 3.37638 3.70677 3.77106 4.02989 4.04696 4.36560 4.45502 4.57742 4.62083 4.68423 4.84571 4.90253 4.95945 5.10041 5.21142 5.24657 5.32197 5.36379 5.53317 5.57233 5.87842 5.93784 6.07012 6.30487 6.50544 6.68292 6.89187 6.94323 6.96242 7.28761 8.31024 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.028480 B = 0.003730 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.910199 B = 7504.927877 C = 8296.209381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 H 0.148 0.852 4 C 0.135 3.865 5 N -0.707 5.707 6 C 0.561 3.439 7 O -0.590 6.590 8 C -0.139 4.139 9 C -0.193 4.193 10 C -0.095 4.095 11 C -0.216 4.216 12 C 0.067 3.933 13 C -0.499 4.499 14 H 0.084 0.916 15 C 0.029 3.971 16 N -0.827 5.827 17 Si 0.981 3.019 18 H -0.257 1.257 19 H -0.274 1.274 20 H -0.255 1.255 21 C -0.132 4.132 22 C 0.496 3.504 23 O -0.554 6.554 24 O -0.501 6.501 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.417 0.583 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.108 0.892 34 H 0.285 0.715 35 H 0.095 0.905 36 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.848 7.531 -16.312 18.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 H 0.166 0.834 4 C 0.011 3.989 5 N -0.361 5.361 6 C 0.351 3.649 7 O -0.472 6.472 8 C -0.142 4.142 9 C -0.213 4.213 10 C -0.113 4.113 11 C -0.236 4.236 12 C 0.065 3.935 13 C -0.528 4.528 14 H 0.102 0.898 15 C -0.186 4.186 16 N -0.452 5.452 17 Si 0.802 3.198 18 H -0.181 1.181 19 H -0.199 1.199 20 H -0.178 1.178 21 C -0.153 4.153 22 C 0.339 3.661 23 O -0.445 6.445 24 O -0.315 6.315 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.257 0.743 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -3.402 6.508 -15.972 17.579 hybrid contribution 0.634 -0.958 0.308 1.189 sum -2.768 5.550 -15.664 16.847 Atomic orbital electron populations 1.21858 0.89555 1.03461 1.05287 1.21114 1.00137 1.02056 0.87120 0.83409 1.21020 0.99840 0.94910 0.83094 1.45547 1.58113 1.28477 1.04000 1.18784 0.77864 0.83922 0.84365 1.90696 1.42372 1.26590 1.87510 1.19732 1.04630 0.97930 0.91885 1.20896 1.05652 0.95535 0.99192 1.20951 0.99094 0.99478 0.91741 1.21436 1.04559 0.99957 0.97618 1.17935 0.90085 0.92247 0.93283 1.19861 1.43531 0.93547 0.95874 0.89787 1.26845 0.93887 0.96526 1.01324 1.69891 1.35100 1.03431 1.36818 0.85214 0.78981 0.78246 0.77372 1.18125 1.19924 1.17819 1.21435 1.01754 1.00688 0.91385 1.23238 0.75767 0.81482 0.85643 1.90781 1.37742 1.28047 1.87886 1.84458 1.71745 1.58807 1.16472 0.92724 0.89684 0.88526 0.92520 0.92752 0.74292 0.83887 0.84028 0.87359 0.90413 0.88655 0.70796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.00 71.98 0.65 -1.23 16 2 C -0.09 -1.42 2.87 -11.54 -0.03 -1.45 16 3 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 4 C 0.14 3.73 4.41 86.38 0.38 4.11 16 5 N -0.71 -21.08 5.24 -465.92 -2.44 -23.52 16 6 C 0.56 24.49 7.77 86.80 0.67 25.17 16 7 O -0.59 -31.56 16.33 -3.84 -0.06 -31.62 16 8 C -0.14 -6.42 5.87 -20.13 -0.12 -6.54 16 9 C -0.19 -7.13 9.55 22.70 0.22 -6.91 16 10 C -0.09 -3.56 10.01 22.18 0.22 -3.34 16 11 C -0.22 -9.87 9.78 22.77 0.22 -9.64 16 12 C 0.07 3.61 5.57 -21.32 -0.12 3.49 16 13 C -0.50 -27.24 9.05 23.47 0.21 -27.03 16 14 H 0.08 4.31 7.90 -2.91 -0.02 4.29 16 15 C 0.03 1.52 5.14 85.25 0.44 1.96 16 16 N -0.83 -46.73 10.97 21.82 0.24 -46.49 16 17 Si 0.98 40.09 29.59 68.60 2.03 42.12 16 18 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 19 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 20 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 21 C -0.13 -7.33 8.23 23.00 0.19 -7.14 16 22 C 0.50 9.38 7.63 71.23 0.54 9.93 16 23 O -0.55 -15.58 16.68 21.97 0.37 -15.21 16 24 O -0.50 -5.74 13.33 -51.45 -0.69 -6.43 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.08 1.00 7.18 -2.39 -0.02 0.98 16 27 H 0.10 0.85 8.11 -2.39 -0.02 0.83 16 28 H 0.06 1.80 7.96 -2.39 -0.02 1.78 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.42 9.04 5.66 -92.71 -0.52 8.51 16 31 H 0.14 3.69 6.38 -2.91 -0.02 3.67 16 32 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 33 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 34 H 0.29 14.93 8.30 -92.71 -0.77 14.17 16 35 H 0.10 5.97 5.76 -2.91 -0.02 5.95 16 36 H 0.43 1.60 9.10 -74.06 -0.67 0.92 16 Total: -1.00 -77.65 315.22 2.86 -74.79 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -0.07 Total: 24.99 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 3.48 Total: -18.62 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -2.20 Total: -70.01 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -0.38 Total: -53.26 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Total: -77.65 2.86 -74.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262476735.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.072 kcal (2) G-P(sol) polarization free energy of solvation -77.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds