Wall clock time and date at job start Mon Mar 30 2020 01:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46505 * 109.46836 * 2 1 4 4 C 1.46492 * 120.00128 * 94.53651 * 3 2 1 5 5 C 1.50703 * 109.47054 * 72.24571 * 4 3 2 6 6 O 1.20822 * 119.99779 * 359.97438 * 5 4 3 7 7 O 1.34229 * 120.00209 * 179.97438 * 5 4 3 8 8 C 1.34774 * 119.99927 * 274.53681 * 3 2 1 9 9 O 1.21555 * 119.99801 * 2.33961 * 8 3 2 10 10 C 1.47883 * 120.00068 * 182.33437 * 8 3 2 11 11 C 1.39917 * 120.02401 * 30.44011 * 10 8 3 12 12 C 1.38327 * 120.36057 * 179.74323 * 11 10 8 13 13 C 1.37755 * 120.41299 * 0.54938 * 12 11 10 14 14 C 1.40755 * 120.03733 * 359.70318 * 13 12 11 15 15 C 1.41431 * 120.17891 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00453 * 141.70550 * 15 14 13 17 17 C 1.39942 * 119.99957 * 321.69862 * 15 14 13 18 18 N 1.30826 * 119.99808 * 159.24955 * 17 15 14 19 19 Si 1.86803 * 119.99820 * 339.24758 * 17 15 14 20 20 H 1.48493 * 109.46962 * 85.25106 * 19 17 15 21 21 H 1.48499 * 109.46856 * 205.25216 * 19 17 15 22 22 H 1.48505 * 109.47177 * 325.24824 * 19 17 15 23 23 C 1.39000 * 120.02707 * 210.70793 * 10 8 3 24 24 H 1.08998 * 109.46479 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47176 * 300.00026 * 1 2 3 26 26 H 1.09000 * 109.47057 * 60.00106 * 1 2 3 27 27 H 1.08998 * 109.47176 * 239.99973 * 2 1 3 28 28 H 1.09000 * 109.47057 * 119.99894 * 2 1 3 29 29 H 1.08999 * 109.47473 * 312.24528 * 4 3 2 30 30 H 1.08996 * 109.47487 * 192.24167 * 4 3 2 31 31 H 0.96704 * 117.00418 * 179.97438 * 7 5 4 32 32 H 1.08002 * 119.82221 * 359.97438 * 11 10 8 33 33 H 1.07997 * 119.80064 * 180.27895 * 12 11 10 34 34 H 1.07998 * 119.98748 * 179.72446 * 13 12 11 35 35 H 0.96993 * 119.99719 * 180.02562 * 18 17 15 36 36 H 1.07992 * 120.20024 * 359.95689 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3571 2.0385 1.2647 5 6 3.6361 1.4547 1.8073 6 8 4.2059 0.5793 1.2000 7 8 4.1424 1.9074 2.9651 8 6 2.1559 2.0474 -1.1635 9 8 1.8347 1.5170 -2.2091 10 6 2.6974 3.4235 -1.1682 11 6 3.6198 3.8162 -0.1921 12 6 4.1348 5.1000 -0.1931 13 6 3.7374 6.0101 -1.1478 14 6 2.8065 5.6349 -2.1346 15 6 2.3968 6.5666 -3.1166 16 1 2.2362 6.2431 -4.1344 17 6 2.1995 7.9078 -2.7693 18 7 2.2233 8.8332 -3.6938 19 14 1.9019 8.3768 -0.9858 20 1 3.2051 8.5428 -0.2936 21 1 1.1451 9.6532 -0.9293 22 1 1.1187 7.3070 -0.3167 23 6 2.2864 4.3294 -2.1390 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5525 1.8810 1.9829 30 1 2.4887 3.1071 1.0950 31 1 4.9646 1.5021 3.2731 32 1 3.9342 3.1120 0.5640 33 1 4.8497 5.3921 0.5619 34 1 4.1406 7.0119 -1.1395 35 1 2.0869 9.7628 -3.4531 36 1 1.5719 4.0318 -2.8921 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262487145.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:01 Heat of formation + Delta-G solvation = -107.769207 kcal Electronic energy + Delta-G solvation = -21601.944236 eV Core-core repulsion = 18243.819576 eV Total energy + Delta-G solvation = -3358.124660 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.03302 -40.69257 -39.18326 -37.38901 -36.68597 -35.58545 -33.38210 -32.02774 -31.40357 -29.29534 -27.24620 -25.34731 -23.53708 -22.96991 -22.61334 -20.68666 -19.41236 -19.11846 -18.10318 -17.87736 -17.56876 -17.17542 -16.89263 -16.24475 -15.90471 -15.43630 -15.33774 -14.74827 -14.57694 -14.42414 -14.19323 -14.02908 -13.60482 -13.43767 -13.19324 -12.92171 -12.77731 -12.64554 -12.51762 -12.20006 -11.99667 -11.86525 -11.83041 -11.61599 -11.11279 -10.86567 -10.04181 -9.67093 -9.52119 -8.87739 -6.55536 0.14001 0.64989 1.11347 1.30736 1.42760 1.47946 1.58304 1.75959 2.14814 2.29566 2.58970 3.32141 3.42515 3.95930 4.08291 4.19813 4.24238 4.25280 4.32564 4.42397 4.49631 4.61172 4.75634 4.82657 4.85320 4.97375 5.13357 5.27333 5.39265 5.42432 5.52788 5.59528 5.65706 5.84885 6.00032 6.18945 6.30640 6.63531 6.75561 6.93941 7.02294 8.21708 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.021842 B = 0.005599 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.601737 B = 4999.801264 C = 5672.582267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.114 3.886 3 N -0.590 5.590 4 C 0.080 3.920 5 C 0.469 3.531 6 O -0.541 6.541 7 O -0.502 6.502 8 C 0.564 3.436 9 O -0.571 6.571 10 C -0.114 4.114 11 C -0.199 4.199 12 C -0.077 4.077 13 C -0.209 4.209 14 C 0.072 3.928 15 C -0.499 4.499 16 H 0.049 0.951 17 C 0.051 3.949 18 N -0.851 5.851 19 Si 0.956 3.044 20 H -0.238 1.238 21 H -0.273 1.273 22 H -0.254 1.254 23 C -0.157 4.157 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.034 0.966 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.156 0.844 30 H 0.155 0.845 31 H 0.430 0.570 32 H 0.134 0.866 33 H 0.150 0.850 34 H 0.113 0.887 35 H 0.294 0.706 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.255 -10.218 18.676 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.007 4.007 3 N -0.322 5.322 4 C -0.043 4.043 5 C 0.311 3.689 6 O -0.431 6.431 7 O -0.315 6.315 8 C 0.355 3.645 9 O -0.451 6.451 10 C -0.117 4.117 11 C -0.218 4.218 12 C -0.095 4.095 13 C -0.228 4.228 14 C 0.069 3.931 15 C -0.529 4.529 16 H 0.067 0.933 17 C -0.164 4.164 18 N -0.477 5.477 19 Si 0.777 3.223 20 H -0.162 1.162 21 H -0.198 1.198 22 H -0.178 1.178 23 C -0.177 4.177 24 H 0.106 0.894 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.118 0.882 29 H 0.174 0.826 30 H 0.172 0.828 31 H 0.292 0.708 32 H 0.151 0.849 33 H 0.168 0.832 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.147 -10.334 17.701 20.497 hybrid contribution 0.395 0.073 -0.372 0.548 sum 0.248 -10.260 17.329 20.140 Atomic orbital electron populations 1.22099 0.94199 1.03476 1.02125 1.21555 0.95323 0.80522 1.03304 1.47543 1.64479 1.15055 1.05096 1.22098 0.93769 1.01759 0.86686 1.23986 0.86854 0.79521 0.78505 1.90762 1.61222 1.31587 1.59529 1.84491 1.45393 1.64151 1.37439 1.18775 0.76407 0.86077 0.83203 1.90699 1.51592 1.70068 1.32736 1.19648 1.01174 0.92210 0.98667 1.21185 1.02515 0.97545 1.00555 1.21068 0.98183 0.92630 0.97614 1.21588 1.00784 1.00560 0.99882 1.17772 0.90837 0.92226 0.92248 1.19337 1.44319 0.93046 0.96193 0.93289 1.26836 0.90714 0.94901 1.03927 1.69753 1.36516 1.03009 1.38419 0.85628 0.80871 0.78331 0.77515 1.16171 1.19811 1.17756 1.21278 1.02316 0.94802 0.99342 0.89365 0.90563 0.94709 0.92280 0.88248 0.82617 0.82784 0.70780 0.84867 0.83238 0.86956 0.89533 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 10.21 71.98 0.73 -2.60 16 2 C 0.11 2.83 5.55 86.38 0.48 3.31 16 3 N -0.59 -17.12 2.18 -829.52 -1.80 -18.93 16 4 C 0.08 1.68 5.50 85.64 0.47 2.15 16 5 C 0.47 9.68 6.23 71.24 0.44 10.12 16 6 O -0.54 -15.26 16.39 21.98 0.36 -14.90 16 7 O -0.50 -6.67 13.42 -51.41 -0.69 -7.36 16 8 C 0.56 22.28 7.41 86.80 0.64 22.92 16 9 O -0.57 -26.67 16.39 -3.89 -0.06 -26.73 16 10 C -0.11 -4.71 5.44 -20.13 -0.11 -4.82 16 11 C -0.20 -6.87 7.39 22.70 0.17 -6.70 16 12 C -0.08 -2.69 10.01 22.18 0.22 -2.47 16 13 C -0.21 -8.99 7.42 22.77 0.17 -8.82 16 14 C 0.07 3.59 4.83 -21.32 -0.10 3.49 16 15 C -0.50 -28.10 9.50 23.47 0.22 -27.88 16 16 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 17 C 0.05 2.65 5.32 85.26 0.45 3.11 16 18 N -0.85 -46.23 13.93 21.83 0.30 -45.93 16 19 Si 0.96 39.57 25.35 68.60 1.74 41.31 16 20 H -0.24 -8.88 6.48 99.48 0.64 -8.24 16 21 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 22 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 23 C -0.16 -7.63 9.34 23.01 0.21 -7.42 16 24 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 1.76 7.60 -2.39 -0.02 1.74 16 28 H 0.10 1.95 7.48 -2.39 -0.02 1.93 16 29 H 0.16 1.92 8.14 -2.39 -0.02 1.91 16 30 H 0.16 3.54 4.15 -2.39 -0.01 3.53 16 31 H 0.43 2.28 9.10 -74.05 -0.67 1.61 16 32 H 0.13 3.76 3.76 -2.91 -0.01 3.75 16 33 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 34 H 0.11 4.75 5.80 -2.91 -0.02 4.73 16 35 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 36 H 0.09 4.75 7.93 -2.91 -0.02 4.73 16 Total: -1.00 -72.48 305.30 4.25 -68.23 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.39 Total: 19.92 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 4.01 Total: -15.62 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: -1.50 Total: -64.86 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -0.39 Total: -48.99 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 1.74 Total: 41.31 kcal Total: -72.48 4.25 -68.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262487145.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.540 kcal (2) G-P(sol) polarization free energy of solvation -72.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds