Wall clock time and date at job start Mon Mar 30 2020 01:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47294 * 2 1 4 4 C 1.50695 * 109.47563 * 239.99702 * 2 1 3 5 5 O 1.20820 * 120.00403 * 240.01134 * 4 2 1 6 6 O 1.34235 * 119.99788 * 59.99618 * 4 2 1 7 7 N 1.46505 * 109.46669 * 120.00002 * 2 1 3 8 8 C 1.46496 * 120.00392 * 59.99700 * 7 2 1 9 9 C 1.34774 * 119.99884 * 239.72598 * 7 2 1 10 10 O 1.21551 * 120.00280 * 4.65018 * 9 7 2 11 11 C 1.47889 * 120.00140 * 184.65500 * 9 7 2 12 12 C 1.39916 * 120.02467 * 22.24797 * 11 9 7 13 13 C 1.38334 * 120.35736 * 179.72142 * 12 11 9 14 14 C 1.37753 * 120.41051 * 0.55633 * 13 12 11 15 15 C 1.40748 * 120.03939 * 359.72088 * 14 13 12 16 16 C 1.41436 * 120.17936 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99869 * 28.86819 * 16 15 14 18 18 C 1.39937 * 120.00381 * 208.87708 * 16 15 14 19 19 N 1.30833 * 119.99581 * 10.23170 * 18 16 15 20 20 Si 1.86796 * 120.00398 * 190.23975 * 18 16 15 21 21 H 1.48507 * 109.46858 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47284 * 119.99412 * 20 18 16 23 23 H 1.48501 * 109.46985 * 239.99910 * 20 18 16 24 24 C 1.38992 * 120.02415 * 202.52032 * 11 9 7 25 25 H 1.08996 * 109.47294 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47616 * 300.00271 * 1 2 3 27 27 H 1.09000 * 109.46951 * 59.99814 * 1 2 3 28 28 H 0.96701 * 116.99667 * 180.02562 * 6 4 2 29 29 H 1.08998 * 109.46699 * 84.51740 * 8 7 2 30 30 H 1.08994 * 109.47762 * 204.51886 * 8 7 2 31 31 H 1.09003 * 109.47273 * 324.52798 * 8 7 2 32 32 H 1.07998 * 119.82086 * 359.97379 * 12 11 9 33 33 H 1.07993 * 119.79178 * 180.25646 * 13 12 11 34 34 H 1.07993 * 119.97770 * 179.74990 * 14 13 12 35 35 H 0.96997 * 119.99458 * 180.02562 * 19 18 16 36 36 H 1.08002 * 120.20534 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.7269 -1.6928 -1.1195 6 8 1.7081 -0.2519 -2.4496 7 7 2.0182 -0.6907 1.1962 8 6 1.6642 -2.0932 1.4282 9 6 2.7976 -0.0373 2.0806 10 8 3.0261 1.1471 1.9305 11 6 3.3749 -0.7614 3.2337 12 6 3.5225 -2.1518 3.1846 13 6 4.0670 -2.8354 4.2569 14 6 4.4595 -2.1569 5.3897 15 6 4.3133 -0.7588 5.4597 16 6 4.7158 -0.0591 6.6211 17 1 5.5166 -0.4456 7.2340 18 6 4.0763 1.1339 6.9761 19 7 2.9832 1.4995 6.3571 20 14 4.7834 2.2046 8.3337 21 1 6.0153 1.5730 8.8712 22 1 5.1123 3.5452 7.7863 23 1 3.7844 2.3462 9.4234 24 6 3.7659 -0.0617 4.3692 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.0536 -0.7411 -3.2088 29 1 2.3602 -2.7371 0.8906 30 1 1.7185 -2.3101 2.4949 31 1 0.6507 -2.2759 1.0712 32 1 3.2135 -2.6939 2.3031 33 1 4.1806 -3.9082 4.2075 34 1 4.8800 -2.6980 6.2243 35 1 2.5402 2.3266 6.6030 36 1 3.6501 1.0112 4.4132 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263226763.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:43 Heat of formation + Delta-G solvation = -82.212640 kcal Electronic energy + Delta-G solvation = -21465.554223 eV Core-core repulsion = 18108.537779 eV Total energy + Delta-G solvation = -3357.016444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70135 -39.31638 -37.13474 -36.28789 -35.43892 -33.79036 -31.96686 -29.64850 -29.44629 -26.99830 -25.22939 -25.02949 -22.85880 -20.99491 -20.67811 -18.97874 -18.16972 -17.52939 -16.84575 -16.23478 -15.66195 -15.48018 -15.09480 -14.87779 -14.51894 -13.77140 -13.58059 -13.26647 -12.89314 -12.71362 -12.49788 -12.36058 -12.26013 -12.02560 -11.64938 -11.52644 -11.43709 -11.16361 -11.06422 -10.55056 -10.50569 -10.29313 -10.05141 -9.60480 -9.27270 -9.07148 -8.47562 -7.63747 -7.44156 -6.74790 -4.43005 2.12006 2.13825 2.74633 2.81379 3.08761 3.13532 3.13819 3.34413 3.77967 3.93651 4.62528 4.79303 4.95860 5.10046 5.34189 5.41385 5.55079 5.57872 5.76018 5.84829 6.01000 6.11591 6.15097 6.34016 6.40447 6.62690 6.73242 6.98438 7.00808 7.21874 7.37558 7.57580 7.73327 7.80229 7.85019 7.97878 8.16721 8.50281 8.72497 8.82220 8.84186 10.19806 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027129 B = 0.004719 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.842686 B = 5932.037668 C = 6568.816797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.149 3.851 3 H 0.137 0.863 4 C 0.467 3.533 5 O -0.503 6.503 6 O -0.516 6.516 7 N -0.602 5.602 8 C 0.064 3.936 9 C 0.573 3.427 10 O -0.545 6.545 11 C -0.130 4.130 12 C -0.228 4.228 13 C -0.104 4.104 14 C -0.203 4.203 15 C 0.097 3.903 16 C -0.461 4.461 17 H 0.080 0.920 18 C 0.071 3.929 19 N -0.799 5.799 20 Si 0.913 3.087 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.274 1.274 24 C -0.085 4.085 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.407 0.593 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.053 0.947 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.282 0.718 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.856 -3.403 -10.852 12.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.155 0.845 4 C 0.308 3.692 5 O -0.390 6.390 6 O -0.328 6.328 7 N -0.337 5.337 8 C -0.078 4.078 9 C 0.367 3.633 10 O -0.422 6.422 11 C -0.133 4.133 12 C -0.247 4.247 13 C -0.123 4.123 14 C -0.223 4.223 15 C 0.094 3.906 16 C -0.491 4.491 17 H 0.098 0.902 18 C -0.146 4.146 19 N -0.424 5.424 20 Si 0.738 3.262 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.200 1.200 24 C -0.105 4.105 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.266 0.734 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.072 0.928 32 H 0.138 0.862 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.871 -2.638 -10.539 12.350 hybrid contribution 0.463 0.020 -0.011 0.464 sum -5.408 -2.618 -10.550 12.141 Atomic orbital electron populations 1.22073 0.91705 1.03279 1.04166 1.20395 0.96081 0.98553 0.80752 0.84548 1.24205 0.77213 0.82876 0.84941 1.90711 1.35213 1.26030 1.87004 1.84543 1.72363 1.59141 1.16719 1.47508 1.52187 1.13391 1.20596 1.22648 0.99410 0.81051 1.04655 1.19035 0.76114 0.86228 0.81946 1.90682 1.60352 1.15668 1.75537 1.19354 1.05928 0.93792 0.94238 1.21334 1.09832 0.93154 1.00418 1.20508 0.99850 0.97584 0.94337 1.21210 1.08781 0.94298 0.97983 1.17604 0.89941 0.90814 0.92202 1.19603 1.16803 1.05040 1.07648 0.90160 1.25922 0.93748 0.97447 0.97444 1.69756 1.13796 1.21693 1.37191 0.86179 0.79951 0.79840 0.80275 1.18446 1.19681 1.19951 1.21667 0.98420 1.00478 0.89926 0.91738 0.90198 0.90226 0.73416 0.91394 0.87403 0.92819 0.86238 0.88749 0.88565 0.90722 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.09 37.16 0.34 -1.33 16 2 C 0.15 2.14 3.16 -69.08 -0.22 1.92 16 3 H 0.14 2.10 6.91 -51.93 -0.36 1.74 16 4 C 0.47 6.33 7.52 36.00 0.27 6.60 16 5 O -0.50 -8.25 15.36 -18.75 -0.29 -8.54 16 6 O -0.52 -5.06 13.33 -39.27 -0.52 -5.59 16 7 N -0.60 -10.56 2.54 -176.37 -0.45 -11.00 16 8 C 0.06 0.97 7.64 59.84 0.46 1.43 16 9 C 0.57 12.72 7.52 -12.31 -0.09 12.62 16 10 O -0.54 -13.41 15.89 5.32 0.08 -13.33 16 11 C -0.13 -3.09 5.56 -105.04 -0.58 -3.67 16 12 C -0.23 -4.83 7.56 -38.92 -0.29 -5.12 16 13 C -0.10 -2.22 10.01 -39.72 -0.40 -2.62 16 14 C -0.20 -4.79 9.78 -38.81 -0.38 -5.17 16 15 C 0.10 2.55 5.55 -106.87 -0.59 1.96 16 16 C -0.46 -12.13 9.06 -37.73 -0.34 -12.47 16 17 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 18 C 0.07 1.80 5.26 -17.34 -0.09 1.71 16 19 N -0.80 -20.98 10.82 55.55 0.60 -20.38 16 20 Si 0.91 18.85 29.57 -169.99 -5.03 13.83 16 21 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 C -0.08 -2.25 8.19 -38.44 -0.31 -2.57 16 25 H 0.06 0.64 6.70 -51.93 -0.35 0.29 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.08 0.70 8.11 -51.93 -0.42 0.28 16 28 H 0.41 2.23 9.10 45.56 0.41 2.65 16 29 H 0.07 1.05 5.99 -51.93 -0.31 0.74 16 30 H 0.11 1.76 4.95 -51.93 -0.26 1.50 16 31 H 0.05 0.66 6.45 -51.93 -0.34 0.32 16 32 H 0.12 2.20 4.13 -52.49 -0.22 1.98 16 33 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 36 H 0.13 3.85 5.95 -52.49 -0.31 3.54 16 LS Contribution 303.46 15.07 4.57 4.57 Total: -1.00 -31.58 303.46 -6.23 -37.80 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -2.96 Total: 9.34 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.24 Total: -6.71 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.15 Total: -31.38 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.73 Total: -27.45 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.58 -6.23 -37.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263226763.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.408 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds