Wall clock time and date at job start Mon Mar 30 2020 01:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47030 * 2 1 4 4 C 1.37096 * 119.99732 * 264.76454 * 3 2 1 5 5 H 1.08002 * 119.99429 * 138.85404 * 4 3 2 6 6 C 1.38943 * 120.00372 * 318.85605 * 4 3 2 7 7 N 1.31415 * 119.99749 * 341.82704 * 6 4 3 8 8 Si 1.86799 * 120.00363 * 161.82979 * 6 4 3 9 9 H 1.48499 * 109.47449 * 89.99621 * 8 6 4 10 10 H 1.48500 * 109.47313 * 210.00133 * 8 6 4 11 11 H 1.48509 * 109.46860 * 329.99758 * 8 6 4 12 12 C 1.34776 * 119.99991 * 84.76654 * 3 2 1 13 13 O 1.21296 * 119.99817 * 179.97438 * 12 3 2 14 14 C 1.50696 * 120.00276 * 0.02562 * 12 3 2 15 15 O 1.42897 * 109.47168 * 179.97438 * 14 12 3 16 16 C 1.35669 * 117.00077 * 179.97438 * 15 14 12 17 17 C 1.39077 * 119.88168 * 0.24867 * 16 15 14 18 18 C 1.37117 * 120.11346 * 180.25714 * 17 16 15 19 19 C 1.40041 * 119.88483 * 359.47136 * 18 17 16 20 20 C 1.46848 * 120.11691 * 180.30071 * 19 18 17 21 21 O 1.21299 * 120.00131 * 359.97438 * 20 19 18 22 22 C 1.40038 * 119.76706 * 0.27385 * 19 18 17 23 23 C 1.37110 * 119.88679 * 0.02562 * 22 19 18 24 24 H 1.09000 * 109.47218 * 300.00126 * 1 2 3 25 25 H 1.09006 * 109.47005 * 60.00249 * 1 2 3 26 26 H 1.09003 * 109.47217 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47059 * 239.99342 * 2 1 3 28 28 H 1.09004 * 109.46582 * 119.99443 * 2 1 3 29 29 H 0.97008 * 119.99755 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47565 * 59.99452 * 14 12 3 31 31 H 1.09003 * 109.46837 * 299.99368 * 14 12 3 32 32 H 1.08002 * 119.94510 * 0.02610 * 17 16 15 33 33 H 1.07997 * 120.06317 * 179.74590 * 18 17 16 34 34 H 1.08006 * 120.00253 * 179.97438 * 20 19 18 35 35 H 1.08002 * 120.05743 * 180.02562 * 22 19 18 36 36 H 1.07999 * 119.94501 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3489 1.9913 -1.1824 5 1 2.0743 3.0217 -1.3535 6 6 3.0372 1.2841 -2.1605 7 7 3.6791 0.1817 -1.8450 8 14 3.0500 1.9003 -3.9239 9 1 4.2056 2.8118 -4.1214 10 1 3.1660 0.7459 -4.8508 11 1 1.7885 2.6331 -4.2013 12 6 2.1425 2.0520 1.1623 13 8 2.5473 3.1955 1.1623 14 6 1.7797 1.3812 2.4620 15 8 1.9963 2.2896 3.5437 16 6 1.7157 1.8388 4.7921 17 6 1.2451 0.5424 4.9713 18 6 0.9549 0.0837 6.2305 19 6 1.1438 0.9194 7.3382 20 6 0.8410 0.4312 8.6897 21 8 0.4261 -0.6976 8.8479 22 6 1.6230 2.2221 7.1527 23 6 1.9042 2.6731 5.8888 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 4.1594 -0.3123 -2.5279 30 1 2.4017 0.4969 2.6006 31 1 0.7303 1.0872 2.4386 32 1 1.1043 -0.1029 4.1168 33 1 0.5857 -0.9217 6.3682 34 1 0.9877 1.0771 9.5427 35 1 1.7707 2.8705 8.0037 36 1 2.2742 3.6775 5.7447 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263911758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:43 Heat of formation + Delta-G solvation = -72.723356 kcal Electronic energy + Delta-G solvation = -20718.083058 eV Core-core repulsion = 17361.478101 eV Total energy + Delta-G solvation = -3356.604958 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.39628 -39.21588 -38.36410 -36.88019 -35.02665 -32.23707 -31.36695 -30.66492 -29.59093 -28.22514 -24.91942 -24.34183 -22.84081 -22.28935 -20.99213 -19.29184 -18.35007 -16.88553 -16.87020 -16.26122 -16.00443 -15.66151 -15.21904 -14.92153 -14.42712 -14.35151 -14.13318 -13.71628 -13.57436 -13.16463 -13.05978 -12.74890 -12.47847 -12.23457 -11.85931 -11.69325 -11.18279 -11.08043 -10.95897 -10.88839 -10.44638 -10.42154 -10.22981 -9.94182 -9.25386 -9.03315 -8.54607 -8.27865 -7.56639 -6.43099 -4.12422 0.60331 1.25135 2.35376 3.05762 3.12157 3.21557 3.28246 3.68549 3.72599 4.10102 4.14513 4.59708 4.68390 4.79274 4.90723 5.05128 5.13632 5.24644 5.39958 5.41349 5.44659 5.55379 5.79210 5.86948 6.05208 6.06425 6.16136 6.19020 6.24856 6.34271 6.55432 6.73419 7.06678 7.29585 7.37441 7.48876 8.16714 8.38417 9.05779 9.23327 9.83929 10.62239 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.038025 B = 0.003522 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.171273 B = 7947.522493 C = 8384.203870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.099 3.901 3 N -0.434 5.434 4 C -0.310 4.310 5 H 0.091 0.909 6 C 0.040 3.960 7 N -0.870 5.870 8 Si 0.922 3.078 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.462 3.538 13 O -0.558 6.558 14 C 0.042 3.958 15 O -0.279 6.279 16 C 0.178 3.822 17 C -0.231 4.231 18 C -0.014 4.014 19 C -0.250 4.250 20 C 0.388 3.612 21 O -0.474 6.474 22 C -0.026 4.026 23 C -0.171 4.171 24 H 0.041 0.959 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.108 0.892 28 H 0.047 0.953 29 H 0.269 0.731 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.100 0.900 35 H 0.137 0.863 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.465 -1.636 13.433 14.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.025 4.025 3 N -0.156 5.156 4 C -0.438 4.438 5 H 0.108 0.892 6 C -0.165 4.165 7 N -0.507 5.507 8 Si 0.748 3.252 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.193 1.193 12 C 0.248 3.752 13 O -0.439 6.439 14 C -0.036 4.036 15 O -0.189 6.189 16 C 0.130 3.870 17 C -0.250 4.250 18 C -0.032 4.032 19 C -0.252 4.252 20 C 0.248 3.752 21 O -0.349 6.349 22 C -0.045 4.045 23 C -0.190 4.190 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.126 0.874 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.116 0.884 35 H 0.155 0.845 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.286 -1.621 13.317 14.419 hybrid contribution 0.071 -0.091 -1.002 1.009 sum -5.215 -1.712 12.315 13.483 Atomic orbital electron populations 1.22250 0.97912 1.00669 1.01726 1.21551 0.91839 0.85397 1.03756 1.43362 1.56207 1.11820 1.04163 1.19394 1.35349 0.98852 0.90190 0.89165 1.25463 0.93755 0.96478 1.00785 1.69921 1.29101 1.17418 1.34255 0.86018 0.79125 0.78402 0.81682 1.20129 1.20732 1.19266 1.19853 0.83106 0.88405 0.83840 1.90575 1.48889 1.18244 1.86213 1.22920 1.01738 0.92723 0.86269 1.86187 1.79746 1.40996 1.11984 1.19645 0.89802 0.92003 0.85564 1.21243 1.08544 0.96138 0.99071 1.21064 0.92079 0.99070 0.90970 1.20739 1.11562 0.96536 0.96332 1.23857 0.72049 0.88081 0.91185 1.90519 1.33991 1.21675 1.88731 1.21018 0.92927 0.93934 0.96585 1.20333 1.07284 1.01158 0.90212 0.94018 0.92008 0.92743 0.87382 0.93472 0.92064 0.89779 0.90100 0.84642 0.84893 0.88355 0.84507 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 10.15 37.16 0.38 -2.40 16 2 C 0.10 2.00 5.41 -4.04 -0.02 1.98 16 3 N -0.43 -10.64 2.50 -114.81 -0.29 -10.93 16 4 C -0.31 -8.38 8.84 -14.94 -0.13 -8.51 16 5 H 0.09 2.54 7.82 -52.49 -0.41 2.13 16 6 C 0.04 1.03 4.95 -17.47 -0.09 0.95 16 7 N -0.87 -22.78 11.61 55.50 0.64 -22.14 16 8 Si 0.92 20.04 29.59 -169.99 -5.03 15.01 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 11 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 12 C 0.46 11.21 7.67 -10.99 -0.08 11.13 16 13 O -0.56 -15.89 16.41 -14.37 -0.24 -16.12 16 14 C 0.04 0.77 3.82 36.00 0.14 0.91 16 15 O -0.28 -5.21 9.65 -38.62 -0.37 -5.59 16 16 C 0.18 2.66 6.70 -38.96 -0.26 2.40 16 17 C -0.23 -3.03 8.99 -39.68 -0.36 -3.39 16 18 C -0.01 -0.16 9.57 -39.31 -0.38 -0.54 16 19 C -0.25 -2.67 5.87 -105.06 -0.62 -3.29 16 20 C 0.39 3.66 11.44 34.21 0.39 4.05 16 21 O -0.47 -6.31 17.16 5.54 0.10 -6.21 16 22 C -0.03 -0.25 9.77 -39.32 -0.38 -0.64 16 23 C -0.17 -2.12 9.95 -39.68 -0.39 -2.52 16 24 H 0.04 0.64 6.60 -51.93 -0.34 0.30 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.11 2.43 5.76 -51.93 -0.30 2.14 16 28 H 0.05 0.85 6.66 -51.93 -0.35 0.50 16 29 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.08 1.40 6.91 -51.93 -0.36 1.04 16 31 H 0.08 1.27 6.06 -51.93 -0.31 0.96 16 32 H 0.14 1.62 6.27 -52.49 -0.33 1.29 16 33 H 0.13 1.50 7.64 -52.49 -0.40 1.10 16 34 H 0.10 0.52 8.06 -52.48 -0.42 0.09 16 35 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 313.84 15.07 4.73 4.73 Total: -1.00 -32.97 313.84 -6.31 -39.29 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.05 Total: 1.81 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.81 Total: 0.14 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.36 Total: -33.06 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.51 Total: -27.92 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.97 -6.31 -39.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263911758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.438 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds