Wall clock time and date at job start Mon Mar 30 2020 01:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47030 * 2 1 4 4 C 1.37096 * 119.99732 * 264.76454 * 3 2 1 5 5 H 1.08002 * 119.99429 * 138.85404 * 4 3 2 6 6 C 1.38943 * 120.00372 * 318.85605 * 4 3 2 7 7 N 1.31415 * 119.99749 * 341.82704 * 6 4 3 8 8 Si 1.86799 * 120.00363 * 161.82979 * 6 4 3 9 9 H 1.48499 * 109.47449 * 89.99621 * 8 6 4 10 10 H 1.48500 * 109.47313 * 210.00133 * 8 6 4 11 11 H 1.48509 * 109.46860 * 329.99758 * 8 6 4 12 12 C 1.34776 * 119.99991 * 84.76654 * 3 2 1 13 13 O 1.21296 * 119.99817 * 179.97438 * 12 3 2 14 14 C 1.50696 * 120.00276 * 0.02562 * 12 3 2 15 15 O 1.42897 * 109.47168 * 179.97438 * 14 12 3 16 16 C 1.35669 * 117.00077 * 179.97438 * 15 14 12 17 17 C 1.39077 * 119.88168 * 0.24867 * 16 15 14 18 18 C 1.37117 * 120.11346 * 180.25714 * 17 16 15 19 19 C 1.40041 * 119.88483 * 359.47136 * 18 17 16 20 20 C 1.46848 * 120.11691 * 180.30071 * 19 18 17 21 21 O 1.21299 * 120.00131 * 359.97438 * 20 19 18 22 22 C 1.40038 * 119.76706 * 0.27385 * 19 18 17 23 23 C 1.37110 * 119.88679 * 0.02562 * 22 19 18 24 24 H 1.09000 * 109.47218 * 300.00126 * 1 2 3 25 25 H 1.09006 * 109.47005 * 60.00249 * 1 2 3 26 26 H 1.09003 * 109.47217 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47059 * 239.99342 * 2 1 3 28 28 H 1.09004 * 109.46582 * 119.99443 * 2 1 3 29 29 H 0.97008 * 119.99755 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47565 * 59.99452 * 14 12 3 31 31 H 1.09003 * 109.46837 * 299.99368 * 14 12 3 32 32 H 1.08002 * 119.94510 * 0.02610 * 17 16 15 33 33 H 1.07997 * 120.06317 * 179.74590 * 18 17 16 34 34 H 1.08006 * 120.00253 * 179.97438 * 20 19 18 35 35 H 1.08002 * 120.05743 * 180.02562 * 22 19 18 36 36 H 1.07999 * 119.94501 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3489 1.9913 -1.1824 5 1 2.0743 3.0217 -1.3535 6 6 3.0372 1.2841 -2.1605 7 7 3.6791 0.1817 -1.8450 8 14 3.0500 1.9003 -3.9239 9 1 4.2056 2.8118 -4.1214 10 1 3.1660 0.7459 -4.8508 11 1 1.7885 2.6331 -4.2013 12 6 2.1425 2.0520 1.1623 13 8 2.5473 3.1955 1.1623 14 6 1.7797 1.3812 2.4620 15 8 1.9963 2.2896 3.5437 16 6 1.7157 1.8388 4.7921 17 6 1.2451 0.5424 4.9713 18 6 0.9549 0.0837 6.2305 19 6 1.1438 0.9194 7.3382 20 6 0.8410 0.4312 8.6897 21 8 0.4261 -0.6976 8.8479 22 6 1.6230 2.2221 7.1527 23 6 1.9042 2.6731 5.8888 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 4.1594 -0.3123 -2.5279 30 1 2.4017 0.4969 2.6006 31 1 0.7303 1.0872 2.4386 32 1 1.1043 -0.1029 4.1168 33 1 0.5857 -0.9217 6.3682 34 1 0.9877 1.0771 9.5427 35 1 1.7707 2.8705 8.0037 36 1 2.2742 3.6775 5.7447 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263911758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:42 Heat of formation + Delta-G solvation = -93.203579 kcal Electronic energy + Delta-G solvation = -20718.971147 eV Core-core repulsion = 17361.478101 eV Total energy + Delta-G solvation = -3357.493047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.53319 -40.48939 -39.73380 -37.99591 -36.91210 -34.14468 -32.29591 -31.68830 -31.23645 -29.70087 -26.68254 -25.32051 -24.14689 -23.58748 -21.88949 -20.97468 -19.53972 -18.73659 -17.87425 -17.63344 -17.46410 -17.04514 -16.67891 -16.24833 -15.69101 -15.48922 -15.33221 -15.14315 -14.70973 -14.56859 -14.38951 -13.88549 -13.76786 -13.59640 -13.45821 -13.26535 -12.88731 -12.70667 -12.43860 -12.14117 -12.07749 -11.89134 -11.79198 -10.95077 -10.73696 -10.47135 -10.13509 -9.49817 -9.31275 -8.40133 -6.17789 -0.28237 0.35796 1.36376 1.40552 1.52433 1.53297 1.79455 1.88818 2.33103 2.82184 2.95251 3.09064 3.46053 3.62375 3.80547 3.85128 3.94864 4.06145 4.24633 4.31676 4.33729 4.56396 4.57062 4.60303 4.77661 4.98108 4.99294 5.18070 5.26117 5.26707 5.34869 5.41096 5.49310 5.66144 6.14420 6.25690 6.49137 6.57683 7.10118 7.32234 7.93042 8.63921 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.038025 B = 0.003522 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.171273 B = 7947.522493 C = 8384.203870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.095 3.905 3 N -0.444 5.444 4 C -0.346 4.346 5 H 0.064 0.936 6 C 0.008 3.992 7 N -0.888 5.888 8 Si 0.984 3.016 9 H -0.279 1.279 10 H -0.265 1.265 11 H -0.265 1.265 12 C 0.444 3.556 13 O -0.616 6.616 14 C 0.061 3.939 15 O -0.313 6.313 16 C 0.143 3.857 17 C -0.234 4.234 18 C -0.027 4.027 19 C -0.250 4.250 20 C 0.398 3.602 21 O -0.515 6.515 22 C -0.007 4.007 23 C -0.182 4.182 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.276 0.724 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.158 0.842 35 H 0.186 0.814 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.223 -2.456 15.337 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.027 4.027 3 N -0.164 5.164 4 C -0.474 4.474 5 H 0.081 0.919 6 C -0.195 4.195 7 N -0.525 5.525 8 Si 0.807 3.193 9 H -0.205 1.205 10 H -0.189 1.189 11 H -0.189 1.189 12 C 0.233 3.767 13 O -0.502 6.502 14 C -0.017 4.017 15 O -0.225 6.225 16 C 0.096 3.904 17 C -0.253 4.253 18 C -0.045 4.045 19 C -0.251 4.251 20 C 0.261 3.739 21 O -0.392 6.392 22 C -0.024 4.024 23 C -0.201 4.201 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.174 0.826 35 H 0.203 0.797 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.062 -2.485 15.236 16.585 hybrid contribution 0.327 0.155 -1.450 1.495 sum -5.735 -2.330 13.785 15.111 Atomic orbital electron populations 1.22149 0.94859 1.02934 1.01551 1.21710 0.94329 0.83014 1.03682 1.43659 1.55783 1.13151 1.03790 1.19376 1.37243 0.98494 0.92269 0.91859 1.26187 0.92784 0.96488 1.04074 1.69979 1.28956 1.17971 1.35563 0.85093 0.78853 0.78253 0.77089 1.20516 1.18947 1.18922 1.20790 0.82223 0.87953 0.85780 1.90516 1.51470 1.20775 1.87416 1.22599 1.03420 0.91993 0.83709 1.86120 1.81270 1.41779 1.13337 1.19983 0.92330 0.93505 0.84548 1.21304 1.08488 0.95560 0.99929 1.21252 0.92402 0.99697 0.91173 1.21173 1.10240 0.96733 0.96995 1.24557 0.69947 0.87725 0.91651 1.90529 1.35858 1.23755 1.89033 1.21448 0.90403 0.93844 0.96730 1.20633 1.07447 1.01251 0.90744 0.92742 0.93649 0.89154 0.89666 0.91212 0.91471 0.88149 0.87381 0.84077 0.84552 0.82638 0.79713 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 10.15 71.98 0.73 -4.26 16 2 C 0.10 3.86 5.41 86.38 0.47 4.32 16 3 N -0.44 -22.38 2.50 -635.54 -1.59 -23.97 16 4 C -0.35 -19.45 8.84 84.04 0.74 -18.71 16 5 H 0.06 3.80 7.82 -2.91 -0.02 3.78 16 6 C 0.01 0.42 4.95 84.92 0.42 0.84 16 7 N -0.89 -46.93 11.61 21.66 0.25 -46.67 16 8 Si 0.98 41.58 29.59 68.60 2.03 43.61 16 9 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 12 C 0.44 22.38 7.67 87.66 0.67 23.05 16 13 O -0.62 -37.08 16.41 15.96 0.26 -36.82 16 14 C 0.06 2.24 3.82 71.23 0.27 2.52 16 15 O -0.31 -11.96 9.65 -70.83 -0.68 -12.65 16 16 C 0.14 4.21 6.70 22.67 0.15 4.36 16 17 C -0.23 -5.91 8.99 22.21 0.20 -5.71 16 18 C -0.03 -0.60 9.57 22.44 0.21 -0.39 16 19 C -0.25 -4.54 5.87 -20.15 -0.12 -4.66 16 20 C 0.40 5.92 11.44 70.07 0.80 6.72 16 21 O -0.51 -12.38 17.16 -3.09 -0.05 -12.43 16 22 C -0.01 -0.10 9.77 22.44 0.22 0.12 16 23 C -0.18 -4.25 9.95 22.21 0.22 -4.03 16 24 H 0.05 1.58 6.60 -2.39 -0.02 1.56 16 25 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.09 3.86 5.76 -2.39 -0.01 3.84 16 28 H 0.07 2.45 6.66 -2.38 -0.02 2.43 16 29 H 0.28 13.55 8.31 -92.70 -0.77 12.78 16 30 H 0.10 3.30 6.91 -2.39 -0.02 3.29 16 31 H 0.11 3.31 6.06 -2.39 -0.01 3.29 16 32 H 0.14 3.23 6.27 -2.91 -0.02 3.21 16 33 H 0.14 2.90 7.64 -2.91 -0.02 2.88 16 34 H 0.16 0.65 8.06 -2.91 -0.02 0.62 16 35 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 36 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -76.66 313.84 6.31 -70.35 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 1.10 Total: 14.41 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 5.00 Total: 4.18 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -1.34 Total: -70.65 kcal Atomic # 8 Polarization: -61.42 SS G_CDS: -0.47 Total: -61.90 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -76.66 6.31 -70.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263911758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.858 kcal (2) G-P(sol) polarization free energy of solvation -76.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds