Wall clock time and date at job start Mon Mar 30 2020 01:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34226 * 117.00841 * 2 1 4 4 O 1.20836 * 119.99200 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00418 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47151 * 60.00077 * 5 3 2 7 7 C 1.53001 * 109.46989 * 299.99598 * 5 3 2 8 8 N 1.46500 * 109.47225 * 179.97438 * 5 3 2 9 9 C 1.34776 * 119.99996 * 204.99882 * 8 5 3 10 10 O 1.21577 * 120.00225 * 0.02562 * 9 8 5 11 11 C 1.47645 * 119.99535 * 179.97438 * 9 8 5 12 12 C 1.40015 * 119.89294 * 180.02562 * 11 9 8 13 13 C 1.36310 * 120.11003 * 180.27632 * 12 11 9 14 14 C 1.40893 * 119.89094 * 359.50007 * 13 12 11 15 15 C 1.41102 * 120.10510 * 180.22834 * 14 13 12 16 16 H 1.07998 * 120.00085 * 204.79439 * 15 14 13 17 17 C 1.40229 * 120.00170 * 24.80056 * 15 14 13 18 18 N 1.30645 * 119.99784 * 17.73895 * 17 15 14 19 19 Si 1.86801 * 120.00102 * 197.74141 * 17 15 14 20 20 H 1.48500 * 109.46959 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47119 * 119.99901 * 19 17 15 22 22 H 1.48503 * 109.47053 * 239.99501 * 19 17 15 23 23 C 1.40888 * 119.79217 * 0.49526 * 14 13 12 24 24 C 1.36318 * 119.88896 * 359.75809 * 23 14 13 25 25 H 1.08994 * 109.47673 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46934 * 300.00373 * 1 2 3 27 27 H 1.09000 * 109.47125 * 59.99548 * 1 2 3 28 28 H 1.08990 * 109.47299 * 300.00333 * 7 5 3 29 29 H 1.09003 * 109.46956 * 60.00173 * 7 5 3 30 30 H 1.09002 * 109.46990 * 179.97438 * 7 5 3 31 31 H 0.97005 * 119.99625 * 24.99994 * 8 5 3 32 32 H 1.08005 * 119.94624 * 359.97438 * 12 11 9 33 33 H 1.08000 * 120.05927 * 179.73728 * 13 12 11 34 34 H 0.97002 * 119.99718 * 180.02562 * 18 17 15 35 35 H 1.07997 * 120.05588 * 179.73431 * 23 14 13 36 36 H 1.08002 * 119.94881 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2746 -0.0006 6 1 3.9557 0.7807 -0.8909 7 6 4.1139 0.5808 1.2484 8 7 3.9819 2.6795 -0.0011 9 6 5.1872 3.0255 -0.4949 10 8 5.9296 2.1719 -0.9403 11 6 5.6057 4.4414 -0.4958 12 6 6.8581 4.7986 -1.0098 13 6 7.2512 6.1038 -1.0078 14 6 6.3906 7.0955 -0.4969 15 6 6.7909 8.4485 -0.4970 16 1 6.3626 9.1385 0.2150 17 6 7.7449 8.8974 -1.4216 18 7 8.0078 8.1869 -2.4860 19 14 8.6398 10.5112 -1.1313 20 1 8.1639 11.1200 0.1368 21 1 10.1004 10.2582 -1.0421 22 1 8.3662 11.4387 -2.2584 23 6 5.1312 6.7313 0.0192 24 6 4.7491 5.4228 0.0176 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.7245 1.0748 2.1385 29 1 3.8047 -0.4644 1.2483 30 1 5.2024 0.6374 1.2477 31 1 3.3894 3.3606 0.3540 32 1 7.5159 4.0381 -1.4042 33 1 8.2192 6.3779 -1.4006 34 1 8.6680 8.4973 -3.1253 35 1 4.4699 7.4874 0.4157 36 1 3.7841 5.1424 0.4133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270287520.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:30 Heat of formation + Delta-G solvation = -110.025749 kcal Electronic energy + Delta-G solvation = -20593.143247 eV Core-core repulsion = 17234.920737 eV Total energy + Delta-G solvation = -3358.222511 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.80297 -39.10624 -37.25176 -36.65729 -34.75848 -33.90485 -31.20571 -29.92896 -29.26023 -27.91101 -25.99483 -24.51602 -22.17349 -21.16830 -20.46970 -19.78727 -17.93696 -17.57521 -17.33323 -16.62553 -16.09938 -15.40949 -15.31180 -14.41875 -14.13429 -13.95151 -13.73312 -13.42009 -13.19986 -12.80502 -12.69103 -12.38584 -12.23052 -12.18378 -11.86236 -11.65608 -11.38117 -11.24203 -11.02223 -10.96415 -10.64729 -10.51219 -10.05234 -9.54679 -9.34170 -9.09336 -8.84615 -7.70021 -7.57853 -7.02899 -4.60879 2.00243 2.18707 2.38229 2.90063 2.95807 3.01227 3.04038 3.67887 3.74186 3.82585 4.51308 4.54677 4.87449 4.94391 5.01348 5.10118 5.27709 5.56330 5.57426 5.69419 5.98532 6.05732 6.06543 6.17267 6.28760 6.72482 6.80011 6.85789 7.05583 7.09550 7.43774 7.52432 7.61749 7.75153 7.87177 8.04921 8.16848 8.42619 8.62672 8.75037 8.96174 9.88931 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.041262 B = 0.003358 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.435443 B = 8337.007230 C = 8707.318587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.459 3.541 4 O -0.500 6.500 5 C 0.157 3.843 6 H 0.124 0.876 7 C -0.157 4.157 8 N -0.731 5.731 9 C 0.578 3.422 10 O -0.570 6.570 11 C -0.285 4.285 12 C -0.034 4.034 13 C -0.183 4.183 14 C 0.129 3.871 15 C -0.441 4.441 16 H 0.085 0.915 17 C 0.073 3.927 18 N -0.768 5.768 19 Si 0.914 3.086 20 H -0.257 1.257 21 H -0.268 1.268 22 H -0.272 1.272 23 C -0.234 4.234 24 C -0.047 4.047 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.406 0.594 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.287 0.713 35 H 0.098 0.902 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.482 -9.951 4.567 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.301 3.699 4 O -0.387 6.387 5 C 0.050 3.950 6 H 0.141 0.859 7 C -0.215 4.215 8 N -0.388 5.388 9 C 0.374 3.626 10 O -0.452 6.452 11 C -0.289 4.289 12 C -0.053 4.053 13 C -0.203 4.203 14 C 0.126 3.874 15 C -0.468 4.468 16 H 0.103 0.897 17 C -0.148 4.148 18 N -0.391 5.391 19 Si 0.737 3.263 20 H -0.181 1.181 21 H -0.193 1.193 22 H -0.197 1.197 23 C -0.254 4.254 24 C -0.066 4.066 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.244 0.756 32 H 0.119 0.881 33 H 0.139 0.861 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.072 -10.260 4.020 13.660 hybrid contribution -0.288 1.112 0.104 1.154 sum -8.360 -9.148 4.124 13.060 Atomic orbital electron populations 1.23292 0.76178 1.03729 1.02709 1.86495 1.23496 1.33025 1.84065 1.23990 0.92153 0.81584 0.72154 1.90680 1.66852 1.36307 1.44860 1.20217 0.85541 0.86436 1.02821 0.85896 1.22132 1.03309 1.00381 0.95681 1.45854 1.20047 1.06395 1.66461 1.18609 0.79295 0.89613 0.75105 1.90641 1.53309 1.52308 1.48892 1.18802 0.99966 0.89873 1.20274 1.20463 0.93761 0.96012 0.95063 1.21011 1.00886 0.91138 1.07238 1.17801 0.89460 0.93349 0.86821 1.19885 1.18140 0.94985 1.13835 0.89661 1.26123 0.95460 0.99651 0.93615 1.69758 1.25320 1.37379 1.06597 0.86165 0.79581 0.80671 0.79889 1.18067 1.19333 1.19667 1.20674 0.97642 0.94801 1.12276 1.20405 0.96286 0.93457 0.96445 0.87967 0.91805 0.91787 0.92025 0.90634 0.90056 0.75609 0.88083 0.86110 0.90174 0.88426 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.98 10.47 -39.25 -0.41 -4.39 16 3 C 0.46 6.24 7.32 36.00 0.26 6.50 16 4 O -0.50 -7.98 15.59 -18.76 -0.29 -8.28 16 5 C 0.16 2.23 3.09 -69.08 -0.21 2.02 16 6 H 0.12 1.79 7.58 -51.93 -0.39 1.39 16 7 C -0.16 -1.86 9.42 37.16 0.35 -1.51 16 8 N -0.73 -12.58 4.90 -55.94 -0.27 -12.86 16 9 C 0.58 12.18 7.73 -12.42 -0.10 12.08 16 10 O -0.57 -13.13 15.98 5.30 0.08 -13.04 16 11 C -0.28 -6.54 5.89 -104.73 -0.62 -7.15 16 12 C -0.03 -0.82 9.52 -39.61 -0.38 -1.20 16 13 C -0.18 -4.68 8.63 -39.27 -0.34 -5.02 16 14 C 0.13 3.29 5.57 -106.80 -0.60 2.70 16 15 C -0.44 -10.97 9.04 -37.75 -0.34 -11.31 16 16 H 0.09 2.01 7.91 -52.49 -0.42 1.60 16 17 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 18 N -0.77 -18.75 10.96 55.56 0.61 -18.14 16 19 Si 0.91 17.36 29.60 -169.99 -5.03 12.33 16 20 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 21 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 22 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 23 C -0.23 -5.50 9.73 -39.27 -0.38 -5.88 16 24 C -0.05 -1.02 9.47 -39.61 -0.38 -1.40 16 25 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.41 6.77 5.79 -40.82 -0.24 6.53 16 32 H 0.10 2.41 7.63 -52.48 -0.40 2.00 16 33 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 34 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 35 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.09 1.70 6.37 -52.49 -0.33 1.36 16 LS Contribution 316.53 15.07 4.77 4.77 Total: -1.00 -29.20 316.53 -6.48 -35.69 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -4.19 Total: 11.10 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.75 Total: -7.19 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.33 Total: -30.99 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.62 Total: -25.71 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.20 -6.48 -35.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270287520.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.340 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds