Wall clock time and date at job start Mon Mar 30 2020 01:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34226 * 117.00841 * 2 1 4 4 O 1.20836 * 119.99200 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00418 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47151 * 60.00077 * 5 3 2 7 7 C 1.53001 * 109.46989 * 299.99598 * 5 3 2 8 8 N 1.46500 * 109.47225 * 179.97438 * 5 3 2 9 9 C 1.34776 * 119.99996 * 204.99882 * 8 5 3 10 10 O 1.21577 * 120.00225 * 0.02562 * 9 8 5 11 11 C 1.47645 * 119.99535 * 179.97438 * 9 8 5 12 12 C 1.40015 * 119.89294 * 180.02562 * 11 9 8 13 13 C 1.36310 * 120.11003 * 180.27632 * 12 11 9 14 14 C 1.40893 * 119.89094 * 359.50007 * 13 12 11 15 15 C 1.41102 * 120.10510 * 180.22834 * 14 13 12 16 16 H 1.07998 * 120.00085 * 204.79439 * 15 14 13 17 17 C 1.40229 * 120.00170 * 24.80056 * 15 14 13 18 18 N 1.30645 * 119.99784 * 17.73895 * 17 15 14 19 19 Si 1.86801 * 120.00102 * 197.74141 * 17 15 14 20 20 H 1.48500 * 109.46959 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47119 * 119.99901 * 19 17 15 22 22 H 1.48503 * 109.47053 * 239.99501 * 19 17 15 23 23 C 1.40888 * 119.79217 * 0.49526 * 14 13 12 24 24 C 1.36318 * 119.88896 * 359.75809 * 23 14 13 25 25 H 1.08994 * 109.47673 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46934 * 300.00373 * 1 2 3 27 27 H 1.09000 * 109.47125 * 59.99548 * 1 2 3 28 28 H 1.08990 * 109.47299 * 300.00333 * 7 5 3 29 29 H 1.09003 * 109.46956 * 60.00173 * 7 5 3 30 30 H 1.09002 * 109.46990 * 179.97438 * 7 5 3 31 31 H 0.97005 * 119.99625 * 24.99994 * 8 5 3 32 32 H 1.08005 * 119.94624 * 359.97438 * 12 11 9 33 33 H 1.08000 * 120.05927 * 179.73728 * 13 12 11 34 34 H 0.97002 * 119.99718 * 180.02562 * 18 17 15 35 35 H 1.07997 * 120.05588 * 179.73431 * 23 14 13 36 36 H 1.08002 * 119.94881 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2746 -0.0006 6 1 3.9557 0.7807 -0.8909 7 6 4.1139 0.5808 1.2484 8 7 3.9819 2.6795 -0.0011 9 6 5.1872 3.0255 -0.4949 10 8 5.9296 2.1719 -0.9403 11 6 5.6057 4.4414 -0.4958 12 6 6.8581 4.7986 -1.0098 13 6 7.2512 6.1038 -1.0078 14 6 6.3906 7.0955 -0.4969 15 6 6.7909 8.4485 -0.4970 16 1 6.3626 9.1385 0.2150 17 6 7.7449 8.8974 -1.4216 18 7 8.0078 8.1869 -2.4860 19 14 8.6398 10.5112 -1.1313 20 1 8.1639 11.1200 0.1368 21 1 10.1004 10.2582 -1.0421 22 1 8.3662 11.4387 -2.2584 23 6 5.1312 6.7313 0.0192 24 6 4.7491 5.4228 0.0176 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.7245 1.0748 2.1385 29 1 3.8047 -0.4644 1.2483 30 1 5.2024 0.6374 1.2477 31 1 3.3894 3.3606 0.3540 32 1 7.5159 4.0381 -1.4042 33 1 8.2192 6.3779 -1.4006 34 1 8.6680 8.4973 -3.1253 35 1 4.4699 7.4874 0.4157 36 1 3.7841 5.1424 0.4133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270287520.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:29 Heat of formation + Delta-G solvation = -127.173460 kcal Electronic energy + Delta-G solvation = -20593.886828 eV Core-core repulsion = 17234.920737 eV Total energy + Delta-G solvation = -3358.966091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.90647 -40.68389 -38.98275 -37.74586 -36.13902 -35.70776 -32.69293 -31.72612 -30.94566 -28.67044 -27.72926 -25.66197 -23.81328 -22.85692 -21.85052 -21.32503 -19.39546 -19.30124 -18.44593 -17.66929 -17.54843 -16.98515 -16.69753 -15.87330 -15.74373 -15.46674 -15.09803 -14.80189 -14.50886 -14.35521 -14.01205 -13.82960 -13.60427 -13.38783 -13.21210 -13.01016 -12.83902 -12.70346 -12.59059 -12.37173 -11.87112 -11.77259 -11.60556 -11.36704 -11.13325 -10.82124 -10.30506 -9.57972 -9.44204 -8.80053 -6.49426 0.40698 0.94186 1.14767 1.33896 1.38408 1.42424 1.55806 2.08298 2.16702 2.34019 2.76763 3.54165 3.67987 3.92331 3.99524 4.24946 4.29008 4.32635 4.33194 4.41132 4.66565 4.71155 4.76085 4.96586 5.01004 5.12246 5.19723 5.20657 5.24300 5.35696 5.58061 5.77465 5.92744 6.00653 6.19654 6.48388 6.54909 6.58783 6.75872 6.87923 7.31950 8.15280 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.041262 B = 0.003358 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.435443 B = 8337.007230 C = 8707.318587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.469 3.531 4 O -0.527 6.527 5 C 0.150 3.850 6 H 0.121 0.879 7 C -0.149 4.149 8 N -0.719 5.719 9 C 0.582 3.418 10 O -0.593 6.593 11 C -0.295 4.295 12 C -0.045 4.045 13 C -0.203 4.203 14 C 0.102 3.898 15 C -0.470 4.470 16 H 0.091 0.909 17 C 0.034 3.966 18 N -0.801 5.801 19 Si 0.990 3.010 20 H -0.252 1.252 21 H -0.264 1.264 22 H -0.264 1.264 23 C -0.247 4.247 24 C -0.039 4.039 25 H 0.138 0.862 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.410 0.590 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.296 0.704 35 H 0.114 0.886 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.805 -10.376 5.465 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.312 3.688 4 O -0.416 6.416 5 C 0.044 3.956 6 H 0.138 0.862 7 C -0.207 4.207 8 N -0.374 5.374 9 C 0.376 3.624 10 O -0.477 6.477 11 C -0.299 4.299 12 C -0.064 4.064 13 C -0.222 4.222 14 C 0.099 3.901 15 C -0.497 4.497 16 H 0.110 0.890 17 C -0.185 4.185 18 N -0.425 5.425 19 Si 0.809 3.191 20 H -0.175 1.175 21 H -0.188 1.188 22 H -0.188 1.188 23 C -0.266 4.266 24 C -0.057 4.057 25 H 0.156 0.844 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.249 0.751 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.107 0.893 35 H 0.132 0.868 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.438 -10.727 4.932 15.116 hybrid contribution 0.003 1.086 -0.188 1.102 sum -9.435 -9.642 4.743 14.300 Atomic orbital electron populations 1.23651 0.74085 1.06137 1.02743 1.86479 1.25388 1.31352 1.83328 1.23680 0.91623 0.81922 0.71544 1.90675 1.67285 1.37290 1.46360 1.20424 0.86599 0.84515 1.04041 0.86181 1.22088 1.02124 1.01901 0.94616 1.45658 1.18633 1.08186 1.64928 1.18289 0.80279 0.88575 0.75242 1.90626 1.54357 1.52624 1.50066 1.19083 0.99576 0.91546 1.19721 1.20547 0.94742 0.95596 0.95518 1.20953 1.00766 0.91828 1.08648 1.18150 0.90441 0.93923 0.87605 1.20188 1.19664 0.95058 1.14748 0.89047 1.27030 0.95522 1.03238 0.92745 1.69801 1.25928 1.39292 1.07443 0.85035 0.78099 0.75963 0.79969 1.17527 1.18817 1.18823 1.20921 0.97267 0.95995 1.12444 1.20675 0.97287 0.92565 0.95203 0.84414 0.91490 0.92107 0.91151 0.87821 0.91645 0.75125 0.88439 0.87556 0.89281 0.86836 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.55 16 2 O -0.35 -6.90 10.47 -51.37 -0.54 -7.44 16 3 C 0.47 11.78 7.32 71.23 0.52 12.30 16 4 O -0.53 -15.88 15.59 21.93 0.34 -15.54 16 5 C 0.15 4.03 3.09 44.24 0.14 4.16 16 6 H 0.12 3.34 7.58 -2.39 -0.02 3.33 16 7 C -0.15 -3.22 9.42 71.98 0.68 -2.55 16 8 N -0.72 -23.82 4.90 -449.17 -2.20 -26.02 16 9 C 0.58 24.30 7.73 86.73 0.67 24.97 16 10 O -0.59 -27.38 15.98 -3.96 -0.06 -27.44 16 11 C -0.29 -13.58 5.89 -19.93 -0.12 -13.70 16 12 C -0.04 -2.25 9.52 22.25 0.21 -2.04 16 13 C -0.20 -10.74 8.63 22.47 0.19 -10.55 16 14 C 0.10 5.33 5.57 -21.28 -0.12 5.21 16 15 C -0.47 -23.71 9.04 23.46 0.21 -23.50 16 16 H 0.09 4.34 7.91 -2.91 -0.02 4.32 16 17 C 0.03 1.58 5.14 85.35 0.44 2.02 16 18 N -0.80 -39.97 10.96 21.87 0.24 -39.73 16 19 Si 0.99 35.34 29.60 68.60 2.03 37.37 16 20 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 21 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 22 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 23 C -0.25 -11.56 9.73 22.47 0.22 -11.34 16 24 C -0.04 -1.65 9.47 22.25 0.21 -1.44 16 25 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 27 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.10 1.66 8.11 -2.39 -0.02 1.64 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.41 12.93 5.79 -92.70 -0.54 12.40 16 32 H 0.10 4.85 7.63 -2.91 -0.02 4.82 16 33 H 0.11 5.82 6.16 -2.91 -0.02 5.80 16 34 H 0.30 13.16 8.29 -92.71 -0.77 12.40 16 35 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 36 H 0.13 4.40 6.37 -2.91 -0.02 4.39 16 Total: -1.00 -63.77 316.53 4.84 -58.93 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: 0.58 Total: 34.75 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: 4.45 Total: -14.88 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -1.96 Total: -65.75 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -0.26 Total: -50.42 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 2.03 Total: 37.37 kcal Total: -63.77 4.84 -58.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270287520.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.241 kcal (2) G-P(sol) polarization free energy of solvation -63.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds