Wall clock time and date at job start Mon Mar 30 2020 02:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00164 * 2 1 4 4 O 1.20824 * 119.99934 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00209 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.47423 * 299.99836 * 5 3 2 7 7 C 1.50707 * 109.47003 * 59.99839 * 5 3 2 8 8 C 1.38235 * 119.99741 * 245.00615 * 7 5 3 9 9 C 1.38241 * 119.99781 * 179.79037 * 8 7 5 10 10 C 1.38234 * 119.99782 * 0.43609 * 9 8 7 11 11 C 1.38236 * 119.99966 * 359.81937 * 10 9 8 12 12 C 1.38232 * 120.00330 * 359.96956 * 11 10 9 13 13 N 1.46501 * 109.47466 * 179.97438 * 5 3 2 14 14 C 1.46500 * 119.99940 * 304.73102 * 13 5 3 15 15 C 1.34775 * 120.00071 * 124.73079 * 13 5 3 16 16 O 1.21682 * 120.00037 * 0.02562 * 15 13 5 17 17 C 1.46377 * 119.99855 * 180.02562 * 15 13 5 18 18 H 1.08000 * 120.00137 * 0.02562 * 17 15 13 19 19 C 1.40052 * 119.99878 * 180.02562 * 17 15 13 20 20 N 1.30669 * 120.00083 * 359.97438 * 19 17 15 21 21 Si 1.86794 * 119.99849 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47242 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47053 * 119.99753 * 21 19 17 24 24 H 1.48497 * 109.47337 * 239.99506 * 21 19 17 25 25 H 1.08992 * 109.47133 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47273 * 300.00268 * 1 2 3 27 27 H 1.09003 * 109.46867 * 60.00220 * 1 2 3 28 28 H 1.07999 * 120.00148 * 359.97438 * 8 7 5 29 29 H 1.07995 * 120.00181 * 180.27157 * 9 8 7 30 30 H 1.07995 * 120.00236 * 179.83764 * 10 9 8 31 31 H 1.07999 * 120.00070 * 180.02562 * 11 10 9 32 32 H 1.07998 * 120.00316 * 180.02562 * 12 11 10 33 33 H 1.09001 * 109.47127 * 264.61637 * 14 13 5 34 34 H 1.08992 * 109.47054 * 144.61002 * 14 13 5 35 35 H 1.09005 * 109.46976 * 24.60844 * 14 13 5 36 36 H 0.96992 * 120.00257 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7809 0.8909 7 6 4.1056 0.5914 -1.2296 8 6 4.8737 -0.5511 -1.1048 9 6 5.3648 -1.1805 -2.2334 10 6 5.0953 -0.6622 -3.4862 11 6 4.3316 0.4833 -3.6107 12 6 3.8369 1.1102 -2.4824 13 7 3.9817 2.6797 -0.0002 14 6 3.4967 3.5864 -1.0436 15 6 4.8101 3.1380 0.9591 16 8 5.2133 2.3848 1.8256 17 6 5.2247 4.5418 0.9587 18 1 4.8665 5.2104 0.1899 19 6 6.0860 5.0179 1.9552 20 7 6.5189 4.2091 2.8856 21 14 6.6156 6.8092 1.9542 22 1 5.9906 7.5096 0.8035 23 1 6.1828 7.4541 3.2199 24 1 8.0940 6.8882 1.8388 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 5.0876 -0.9537 -0.1257 29 1 5.9612 -2.0756 -2.1361 30 1 5.4811 -1.1524 -4.3678 31 1 4.1207 0.8880 -4.5895 32 1 3.2399 2.0049 -2.5796 33 1 4.2330 3.6448 -1.8453 34 1 3.3417 4.5785 -0.6196 35 1 2.5545 3.2105 -1.4425 36 1 7.1151 4.5389 3.5760 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274754788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:02 Heat of formation + Delta-G solvation = -78.967751 kcal Electronic energy + Delta-G solvation = -21882.130352 eV Core-core repulsion = 18525.254617 eV Total energy + Delta-G solvation = -3356.875735 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52585 -38.91521 -37.55041 -36.10151 -34.19674 -32.52469 -31.53041 -30.63213 -28.43833 -27.13549 -26.10065 -24.74970 -22.29190 -21.94053 -20.87687 -19.10836 -17.55742 -16.87674 -16.52484 -16.19739 -15.82730 -15.58549 -15.11497 -14.71607 -14.06538 -13.91917 -13.84155 -13.32081 -13.15187 -12.68160 -12.47992 -12.31580 -12.05039 -11.73118 -11.64901 -11.52677 -11.19433 -11.04397 -10.79145 -10.67601 -10.50958 -10.29786 -10.21016 -10.08710 -8.91060 -8.68181 -8.56276 -7.71771 -7.44016 -6.26369 -4.70959 1.52255 1.63560 2.53838 2.90433 3.11422 3.19806 3.24488 3.90611 4.10266 4.47566 4.54879 4.90171 5.08583 5.14567 5.20156 5.26622 5.27226 5.32263 5.59215 5.66584 5.70418 5.81086 5.88398 6.02615 6.14629 6.26324 6.43758 6.53557 6.65427 6.67978 6.71763 6.84182 7.19598 7.39229 7.40819 7.93113 8.12667 8.25348 8.96122 9.26003 10.46227 10.66322 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017541 B = 0.006089 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.906348 B = 4597.286925 C = 5311.673777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.455 3.545 4 O -0.495 6.495 5 C 0.197 3.803 6 H 0.137 0.863 7 C -0.078 4.078 8 C -0.093 4.093 9 C -0.122 4.122 10 C -0.123 4.123 11 C -0.123 4.123 12 C -0.112 4.112 13 N -0.619 5.619 14 C 0.100 3.900 15 C 0.558 3.442 16 O -0.575 6.575 17 C -0.533 4.533 18 H 0.076 0.924 19 C 0.086 3.914 20 N -0.764 5.764 21 Si 0.910 3.090 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.565 -8.056 -10.494 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.296 3.704 4 O -0.381 6.381 5 C 0.089 3.911 6 H 0.154 0.846 7 C -0.080 4.080 8 C -0.112 4.112 9 C -0.140 4.140 10 C -0.141 4.141 11 C -0.141 4.141 12 C -0.130 4.130 13 N -0.356 5.356 14 C -0.044 4.044 15 C 0.365 3.635 16 O -0.457 6.457 17 C -0.569 4.569 18 H 0.094 0.906 19 C -0.134 4.134 20 N -0.393 5.393 21 Si 0.734 3.266 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.201 1.201 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.461 -8.157 -9.822 14.309 hybrid contribution -0.018 1.009 -0.050 1.010 sum -6.479 -7.148 -9.872 13.803 Atomic orbital electron populations 1.23185 0.77303 1.03154 1.02260 1.86559 1.22686 1.33939 1.84270 1.24658 0.92558 0.81249 0.71919 1.90615 1.66767 1.36164 1.44567 1.18976 0.85059 0.88260 0.98824 0.84574 1.19895 0.98699 0.95415 0.93961 1.21071 0.96357 0.94635 0.99120 1.21076 1.00341 1.00131 0.92487 1.21097 0.99041 0.96665 0.97303 1.21053 0.98771 0.96154 0.98165 1.21338 1.00031 0.99603 0.92029 1.47922 1.51399 1.05013 1.31279 1.21608 0.96922 0.95042 0.90790 1.18386 0.76930 0.89247 0.78905 1.90589 1.58441 1.58532 1.38182 1.20983 1.29822 0.93037 1.13076 0.90633 1.25759 0.94451 0.98998 0.94194 1.70019 1.24112 1.35303 1.09862 0.86273 0.78746 0.82627 0.78931 1.18625 1.20092 1.20072 0.88492 0.92107 0.92261 0.85581 0.86107 0.86438 0.86300 0.85575 0.94654 0.91024 0.92663 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.49 16 2 O -0.36 -5.83 10.48 -39.26 -0.41 -6.24 16 3 C 0.46 8.72 6.71 36.00 0.24 8.96 16 4 O -0.49 -10.33 13.96 -18.75 -0.26 -10.59 16 5 C 0.20 4.04 2.87 -70.23 -0.20 3.84 16 6 H 0.14 3.02 6.66 -51.93 -0.35 2.67 16 7 C -0.08 -1.38 4.89 -104.62 -0.51 -1.90 16 8 C -0.09 -1.49 9.67 -39.58 -0.38 -1.88 16 9 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 10 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 11 C -0.12 -1.67 10.05 -39.58 -0.40 -2.06 16 12 C -0.11 -1.79 8.39 -39.59 -0.33 -2.12 16 13 N -0.62 -14.52 2.57 -178.27 -0.46 -14.98 16 14 C 0.10 2.01 7.26 59.85 0.43 2.44 16 15 C 0.56 15.92 7.61 -12.99 -0.10 15.82 16 16 O -0.57 -18.25 14.35 5.21 0.07 -18.18 16 17 C -0.53 -15.01 8.73 -35.63 -0.31 -15.32 16 18 H 0.08 1.96 6.12 -52.49 -0.32 1.64 16 19 C 0.09 2.39 5.50 -17.37 -0.10 2.29 16 20 N -0.76 -22.65 11.83 55.55 0.66 -22.00 16 21 Si 0.91 20.08 29.56 -169.99 -5.02 15.05 16 22 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 27 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 28 H 0.13 1.92 7.95 -52.49 -0.42 1.50 16 29 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.13 1.98 4.94 -52.49 -0.26 1.72 16 33 H 0.04 0.66 7.54 -51.93 -0.39 0.26 16 34 H 0.07 1.49 6.41 -51.93 -0.33 1.16 16 35 H 0.05 1.02 4.82 -51.93 -0.25 0.77 16 36 H 0.27 7.20 8.29 -40.82 -0.34 6.87 16 LS Contribution 307.71 15.07 4.64 4.64 Total: -1.00 -34.78 307.71 -6.16 -40.94 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -3.99 Total: 3.79 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -1.38 Total: 7.57 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.20 Total: -36.97 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.60 Total: -35.01 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.78 -6.16 -40.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274754788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.027 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds