Wall clock time and date at job start Mon Mar 30 2020 02:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00164 * 2 1 4 4 O 1.20824 * 119.99934 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00209 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.47423 * 299.99836 * 5 3 2 7 7 C 1.50707 * 109.47003 * 59.99839 * 5 3 2 8 8 C 1.38235 * 119.99741 * 245.00615 * 7 5 3 9 9 C 1.38241 * 119.99781 * 179.79037 * 8 7 5 10 10 C 1.38234 * 119.99782 * 0.43609 * 9 8 7 11 11 C 1.38236 * 119.99966 * 359.81937 * 10 9 8 12 12 C 1.38232 * 120.00330 * 359.96956 * 11 10 9 13 13 N 1.46501 * 109.47466 * 179.97438 * 5 3 2 14 14 C 1.46500 * 119.99940 * 304.73102 * 13 5 3 15 15 C 1.34775 * 120.00071 * 124.73079 * 13 5 3 16 16 O 1.21682 * 120.00037 * 0.02562 * 15 13 5 17 17 C 1.46377 * 119.99855 * 180.02562 * 15 13 5 18 18 H 1.08000 * 120.00137 * 0.02562 * 17 15 13 19 19 C 1.40052 * 119.99878 * 180.02562 * 17 15 13 20 20 N 1.30669 * 120.00083 * 359.97438 * 19 17 15 21 21 Si 1.86794 * 119.99849 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47242 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47053 * 119.99753 * 21 19 17 24 24 H 1.48497 * 109.47337 * 239.99506 * 21 19 17 25 25 H 1.08992 * 109.47133 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47273 * 300.00268 * 1 2 3 27 27 H 1.09003 * 109.46867 * 60.00220 * 1 2 3 28 28 H 1.07999 * 120.00148 * 359.97438 * 8 7 5 29 29 H 1.07995 * 120.00181 * 180.27157 * 9 8 7 30 30 H 1.07995 * 120.00236 * 179.83764 * 10 9 8 31 31 H 1.07999 * 120.00070 * 180.02562 * 11 10 9 32 32 H 1.07998 * 120.00316 * 180.02562 * 12 11 10 33 33 H 1.09001 * 109.47127 * 264.61637 * 14 13 5 34 34 H 1.08992 * 109.47054 * 144.61002 * 14 13 5 35 35 H 1.09005 * 109.46976 * 24.60844 * 14 13 5 36 36 H 0.96992 * 120.00257 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7809 0.8909 7 6 4.1056 0.5914 -1.2296 8 6 4.8737 -0.5511 -1.1048 9 6 5.3648 -1.1805 -2.2334 10 6 5.0953 -0.6622 -3.4862 11 6 4.3316 0.4833 -3.6107 12 6 3.8369 1.1102 -2.4824 13 7 3.9817 2.6797 -0.0002 14 6 3.4967 3.5864 -1.0436 15 6 4.8101 3.1380 0.9591 16 8 5.2133 2.3848 1.8256 17 6 5.2247 4.5418 0.9587 18 1 4.8665 5.2104 0.1899 19 6 6.0860 5.0179 1.9552 20 7 6.5189 4.2091 2.8856 21 14 6.6156 6.8092 1.9542 22 1 5.9906 7.5096 0.8035 23 1 6.1828 7.4541 3.2199 24 1 8.0940 6.8882 1.8388 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 5.0876 -0.9537 -0.1257 29 1 5.9612 -2.0756 -2.1361 30 1 5.4811 -1.1524 -4.3678 31 1 4.1207 0.8880 -4.5895 32 1 3.2399 2.0049 -2.5796 33 1 4.2330 3.6448 -1.8453 34 1 3.3417 4.5785 -0.6196 35 1 2.5545 3.2105 -1.4425 36 1 7.1151 4.5389 3.5760 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274754788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:02 Heat of formation + Delta-G solvation = -101.461075 kcal Electronic energy + Delta-G solvation = -21883.105735 eV Core-core repulsion = 18525.254617 eV Total energy + Delta-G solvation = -3357.851119 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.01616 -40.23651 -39.31272 -37.63921 -35.99586 -34.66647 -32.98444 -31.79650 -29.74783 -28.64398 -27.94450 -26.42742 -23.45258 -23.20583 -22.51074 -20.85211 -19.07206 -18.45603 -18.14596 -17.84162 -17.41160 -17.10715 -16.57281 -16.18806 -15.64271 -15.43148 -15.27778 -14.64174 -14.41639 -14.34112 -14.04331 -13.59637 -13.37906 -13.35412 -13.28109 -13.08972 -12.92676 -12.79306 -12.38603 -12.04265 -11.97692 -11.87808 -11.76857 -11.67706 -10.97328 -9.98978 -9.81237 -9.67518 -9.31882 -8.34336 -6.90356 0.34924 0.50527 1.01175 1.37228 1.38898 1.51353 1.58647 2.22450 2.40296 2.61540 3.03165 3.46947 3.60370 3.85628 3.95439 4.13938 4.23683 4.26725 4.29206 4.30329 4.40482 4.62956 4.64018 4.70734 4.79754 4.91641 5.03357 5.15352 5.21549 5.32902 5.54076 5.58042 5.60210 5.63729 5.97908 6.10476 6.19776 6.62280 6.82297 7.23639 8.34170 8.60494 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017541 B = 0.006089 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.906348 B = 4597.286925 C = 5311.673777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.464 3.536 4 O -0.518 6.518 5 C 0.193 3.807 6 H 0.106 0.894 7 C -0.102 4.102 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.114 4.114 11 C -0.120 4.120 12 C -0.126 4.126 13 N -0.622 5.622 14 C 0.105 3.895 15 C 0.541 3.459 16 O -0.624 6.624 17 C -0.560 4.560 18 H 0.092 0.908 19 C 0.029 3.971 20 N -0.817 5.817 21 Si 0.998 3.002 22 H -0.247 1.247 23 H -0.269 1.269 24 H -0.265 1.265 25 H 0.137 0.863 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.150 0.850 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.124 0.876 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.724 -7.962 -13.224 16.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.306 3.694 4 O -0.407 6.407 5 C 0.086 3.914 6 H 0.124 0.876 7 C -0.104 4.104 8 C -0.134 4.134 9 C -0.137 4.137 10 C -0.132 4.132 11 C -0.137 4.137 12 C -0.144 4.144 13 N -0.358 5.358 14 C -0.037 4.037 15 C 0.349 3.651 16 O -0.511 6.511 17 C -0.596 4.596 18 H 0.110 0.890 19 C -0.186 4.186 20 N -0.446 5.446 21 Si 0.817 3.183 22 H -0.169 1.169 23 H -0.193 1.193 24 H -0.190 1.190 25 H 0.155 0.845 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.168 0.832 30 H 0.175 0.825 31 H 0.169 0.831 32 H 0.142 0.858 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.667 -8.100 -12.604 16.398 hybrid contribution -0.060 0.801 0.732 1.087 sum -6.726 -7.299 -11.871 15.474 Atomic orbital electron populations 1.23606 0.74526 1.05939 1.02538 1.86525 1.25257 1.32045 1.83508 1.24229 0.91993 0.81762 0.71448 1.90591 1.67123 1.36976 1.45968 1.18982 0.86370 0.86594 0.99441 0.87607 1.19735 1.00706 0.96634 0.93297 1.21198 0.97110 0.94935 1.00126 1.21430 0.99681 1.00659 0.91965 1.21581 0.97470 0.95931 0.98173 1.21441 0.97704 0.96009 0.98571 1.21404 1.00829 1.00029 0.92153 1.47666 1.50569 1.06790 1.30790 1.21671 0.98052 0.93905 0.90120 1.18739 0.77472 0.89628 0.79274 1.90535 1.60497 1.59701 1.40331 1.21487 1.30558 0.93461 1.14124 0.88989 1.27007 0.93802 1.04715 0.93101 1.70176 1.25080 1.38390 1.10973 0.84969 0.78577 0.75221 0.79569 1.16944 1.19346 1.19017 0.84467 0.92449 0.91425 0.86383 0.83249 0.82531 0.83095 0.85826 0.93086 0.92067 0.90989 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.65 10.48 -51.41 -0.54 -12.19 16 3 C 0.46 18.26 6.71 71.23 0.48 18.74 16 4 O -0.52 -22.03 13.96 21.97 0.31 -21.72 16 5 C 0.19 8.35 2.87 43.50 0.12 8.48 16 6 H 0.11 5.15 6.66 -2.38 -0.02 5.13 16 7 C -0.10 -3.69 4.89 -19.86 -0.10 -3.79 16 8 C -0.12 -3.72 9.67 22.27 0.22 -3.51 16 9 C -0.12 -2.96 10.05 22.27 0.22 -2.74 16 10 C -0.11 -2.45 10.05 22.27 0.22 -2.22 16 11 C -0.12 -2.85 10.05 22.27 0.22 -2.63 16 12 C -0.13 -3.90 8.39 22.27 0.19 -3.71 16 13 N -0.62 -30.41 2.57 -836.13 -2.15 -32.56 16 14 C 0.11 4.26 7.26 127.77 0.93 5.19 16 15 C 0.54 32.43 7.61 86.36 0.66 33.09 16 16 O -0.62 -42.18 14.35 -4.29 -0.06 -42.25 16 17 C -0.56 -32.39 8.73 24.83 0.22 -32.17 16 18 H 0.09 4.82 6.12 -2.91 -0.02 4.80 16 19 C 0.03 1.65 5.50 85.31 0.47 2.12 16 20 N -0.82 -50.18 11.83 21.84 0.26 -49.92 16 21 Si 1.00 41.34 29.56 68.60 2.03 43.37 16 22 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 24 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 25 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 27 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 28 H 0.12 3.84 7.95 -2.91 -0.02 3.82 16 29 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 31 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 32 H 0.12 3.78 4.94 -2.91 -0.01 3.76 16 33 H 0.05 1.88 7.54 -2.39 -0.02 1.87 16 34 H 0.06 2.57 6.41 -2.39 -0.02 2.56 16 35 H 0.07 2.66 4.82 -2.38 -0.01 2.64 16 36 H 0.28 15.27 8.29 -92.71 -0.77 14.50 16 Total: -1.00 -79.82 307.71 6.00 -73.82 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 1.11 Total: 22.79 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 5.05 Total: 18.66 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -1.89 Total: -82.48 kcal Atomic # 8 Polarization: -75.87 SS G_CDS: -0.29 Total: -76.16 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -79.82 6.00 -73.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274754788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.641 kcal (2) G-P(sol) polarization free energy of solvation -79.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds