Wall clock time and date at job start Mon Mar 30 2020 02:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 117.00105 * 2 1 4 4 O 1.20824 * 120.00065 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99869 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47077 * 60.00315 * 5 3 2 7 7 C 1.50699 * 109.47336 * 300.00391 * 5 3 2 8 8 C 1.38231 * 119.99863 * 111.14195 * 7 5 3 9 9 C 1.38244 * 119.99575 * 179.81237 * 8 7 5 10 10 C 1.38233 * 120.00248 * 0.39156 * 9 8 7 11 11 C 1.38233 * 119.99615 * 359.86279 * 10 9 8 12 12 C 1.38231 * 120.00602 * 359.94781 * 11 10 9 13 13 N 1.46499 * 109.47033 * 180.02562 * 5 3 2 14 14 C 1.46505 * 119.99788 * 54.83283 * 13 5 3 15 15 C 1.34778 * 120.00278 * 234.83237 * 13 5 3 16 16 O 1.21683 * 119.99712 * 359.97438 * 15 13 5 17 17 C 1.46375 * 119.99956 * 180.02562 * 15 13 5 18 18 H 1.07999 * 119.99987 * 354.79152 * 17 15 13 19 19 C 1.40050 * 119.99853 * 174.78912 * 17 15 13 20 20 N 1.30676 * 119.99820 * 6.26405 * 19 17 15 21 21 Si 1.86800 * 119.99885 * 186.26432 * 19 17 15 22 22 H 1.48504 * 109.46870 * 94.97912 * 21 19 17 23 23 H 1.48496 * 109.47086 * 214.97688 * 21 19 17 24 24 H 1.48497 * 109.47147 * 334.98069 * 21 19 17 25 25 H 1.09000 * 109.47116 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46735 * 299.99468 * 1 2 3 27 27 H 1.08999 * 109.47055 * 59.99692 * 1 2 3 28 28 H 1.07996 * 120.00421 * 359.97438 * 8 7 5 29 29 H 1.08000 * 119.99480 * 180.23167 * 9 8 7 30 30 H 1.07999 * 120.00250 * 179.83805 * 10 9 8 31 31 H 1.08000 * 119.99713 * 179.97438 * 11 10 9 32 32 H 1.07997 * 120.00351 * 180.02562 * 12 11 10 33 33 H 1.08997 * 109.47057 * 95.49410 * 14 13 5 34 34 H 1.09004 * 109.47154 * 215.49023 * 14 13 5 35 35 H 1.09003 * 109.47060 * 335.49398 * 14 13 5 36 36 H 0.96994 * 119.99562 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9564 0.7805 -0.8892 7 6 4.1047 0.5918 1.2313 8 6 4.8052 -0.5940 1.1131 9 6 5.3024 -1.2185 2.2418 10 6 5.0921 -0.6614 3.4893 11 6 4.3870 0.5217 3.6079 12 6 3.8932 1.1483 2.4790 13 7 3.9818 2.6796 0.0011 14 6 3.4883 3.5890 1.0383 15 6 4.8179 3.1355 -0.9526 16 8 5.2281 2.3801 -1.8138 17 6 5.2334 4.5391 -0.9517 18 1 4.8055 5.2284 -0.2389 19 6 6.1858 4.9880 -1.8752 20 7 6.6129 4.1868 -2.8151 21 14 6.8455 6.7320 -1.7634 22 1 8.1134 6.7330 -0.9902 23 1 7.0989 7.2540 -3.1303 24 1 5.8488 7.5955 -1.0807 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 4.9664 -1.0312 0.1389 29 1 5.8529 -2.1430 2.1491 30 1 5.4783 -1.1506 4.3713 31 1 4.2224 0.9568 4.5825 32 1 3.3428 2.0728 2.5716 33 1 4.2190 3.6510 1.8448 34 1 3.3350 4.5796 0.6101 35 1 2.5438 3.2131 1.4318 36 1 7.2727 4.4976 -3.4544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274754792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:04 Heat of formation + Delta-G solvation = -77.804637 kcal Electronic energy + Delta-G solvation = -21886.119544 eV Core-core repulsion = 18529.294245 eV Total energy + Delta-G solvation = -3356.825298 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.53010 -38.91820 -37.55057 -36.10573 -34.20171 -32.52850 -31.53915 -30.61609 -28.44523 -27.14191 -26.11474 -24.75018 -22.27590 -21.94471 -20.87537 -19.11060 -17.57228 -16.87086 -16.53219 -16.19410 -15.82942 -15.58510 -15.11240 -14.71645 -14.06120 -13.91708 -13.86089 -13.31725 -13.16615 -12.68569 -12.46625 -12.29749 -12.05351 -11.74464 -11.64447 -11.53378 -11.20502 -11.03780 -10.79043 -10.66003 -10.50347 -10.30408 -10.23368 -10.08270 -8.89636 -8.67708 -8.54710 -7.71955 -7.44220 -6.27207 -4.70590 1.52479 1.64025 2.53587 2.90252 3.12427 3.19668 3.23504 3.91112 4.10280 4.46889 4.54316 4.90196 5.09714 5.14717 5.19940 5.26647 5.27191 5.32780 5.59143 5.67424 5.69744 5.80725 5.88776 6.02105 6.14730 6.26582 6.42586 6.52917 6.65873 6.67871 6.71755 6.84375 7.19963 7.39307 7.40922 7.93102 8.12458 8.25225 8.96090 9.25868 10.45984 10.66016 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017406 B = 0.006128 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.233505 B = 4568.008138 C = 5293.468359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.455 3.545 4 O -0.495 6.495 5 C 0.197 3.803 6 H 0.137 0.863 7 C -0.078 4.078 8 C -0.094 4.094 9 C -0.123 4.123 10 C -0.123 4.123 11 C -0.124 4.124 12 C -0.113 4.113 13 N -0.619 5.619 14 C 0.099 3.901 15 C 0.558 3.442 16 O -0.575 6.575 17 C -0.534 4.534 18 H 0.076 0.924 19 C 0.087 3.913 20 N -0.764 5.764 21 Si 0.910 3.090 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.263 1.263 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.129 0.871 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.629 -8.042 10.488 14.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.296 3.704 4 O -0.381 6.381 5 C 0.089 3.911 6 H 0.154 0.846 7 C -0.080 4.080 8 C -0.112 4.112 9 C -0.141 4.141 10 C -0.141 4.141 11 C -0.142 4.142 12 C -0.131 4.131 13 N -0.356 5.356 14 C -0.044 4.044 15 C 0.366 3.634 16 O -0.458 6.458 17 C -0.570 4.570 18 H 0.094 0.906 19 C -0.134 4.134 20 N -0.392 5.392 21 Si 0.734 3.266 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.187 1.187 25 H 0.115 0.885 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.147 0.853 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.517 -8.146 9.817 14.325 hybrid contribution 0.063 0.976 0.116 0.985 sum -6.455 -7.170 9.932 13.846 Atomic orbital electron populations 1.23187 0.77293 1.03158 1.02262 1.86559 1.22694 1.33934 1.84265 1.24658 0.92542 0.81252 0.71910 1.90614 1.66766 1.36159 1.44585 1.18973 0.85043 0.88263 0.98826 0.84568 1.19903 0.99008 0.95124 0.93975 1.21061 0.96652 0.94465 0.99060 1.21072 1.00337 1.00124 0.92532 1.21098 0.99365 0.96315 0.97341 1.21061 0.98997 0.95919 0.98186 1.21412 0.99864 0.99818 0.92001 1.47920 1.50913 1.04977 1.31833 1.21630 0.96887 0.94982 0.90939 1.18376 0.76827 0.89331 0.78884 1.90589 1.58208 1.58622 1.38364 1.20950 1.24816 0.92647 1.18637 0.90634 1.25754 0.95223 0.98710 0.93665 1.70022 1.22865 1.35510 1.10837 0.86317 0.79660 0.82442 0.78169 1.19697 1.20388 1.18740 0.88489 0.92266 0.92096 0.85616 0.86122 0.86449 0.86296 0.85328 0.94570 0.91062 0.92575 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.49 16 2 O -0.36 -5.82 10.48 -39.25 -0.41 -6.23 16 3 C 0.46 8.71 6.78 36.00 0.24 8.95 16 4 O -0.50 -10.31 13.92 -18.75 -0.26 -10.57 16 5 C 0.20 4.04 2.86 -70.24 -0.20 3.84 16 6 H 0.14 3.02 6.68 -51.93 -0.35 2.67 16 7 C -0.08 -1.39 4.88 -104.62 -0.51 -1.90 16 8 C -0.09 -1.50 9.67 -39.58 -0.38 -1.88 16 9 C -0.12 -1.66 10.05 -39.58 -0.40 -2.05 16 10 C -0.12 -1.57 10.05 -39.58 -0.40 -1.96 16 11 C -0.12 -1.68 10.05 -39.59 -0.40 -2.08 16 12 C -0.11 -1.82 8.53 -39.58 -0.34 -2.16 16 13 N -0.62 -14.51 2.57 -178.27 -0.46 -14.97 16 14 C 0.10 1.98 7.23 59.85 0.43 2.42 16 15 C 0.56 15.93 7.61 -12.99 -0.10 15.84 16 16 O -0.58 -18.27 14.38 5.20 0.07 -18.20 16 17 C -0.53 -15.04 8.75 -35.63 -0.31 -15.35 16 18 H 0.08 1.96 6.07 -52.49 -0.32 1.64 16 19 C 0.09 2.40 5.49 -17.36 -0.10 2.31 16 20 N -0.76 -22.63 11.85 55.55 0.66 -21.97 16 21 Si 0.91 20.06 29.56 -169.99 -5.03 15.03 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 25 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 27 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.13 1.89 7.97 -52.49 -0.42 1.47 16 29 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.13 2.03 4.65 -52.49 -0.24 1.79 16 33 H 0.04 0.67 7.35 -51.93 -0.38 0.29 16 34 H 0.07 1.48 6.35 -51.93 -0.33 1.15 16 35 H 0.06 1.03 4.93 -51.93 -0.26 0.78 16 36 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 LS Contribution 307.46 15.07 4.63 4.63 Total: -1.00 -34.78 307.46 -6.14 -40.93 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -3.96 Total: 3.89 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -1.39 Total: 7.46 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.20 Total: -36.94 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -0.60 Total: -35.00 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.78 -6.14 -40.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274754792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.878 kcal (2) G-P(sol) polarization free energy of solvation -34.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds