Wall clock time and date at job start Mon Mar 30 2020 02:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 117.00105 * 2 1 4 4 O 1.20824 * 120.00065 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99869 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47077 * 60.00315 * 5 3 2 7 7 C 1.50699 * 109.47336 * 300.00391 * 5 3 2 8 8 C 1.38231 * 119.99863 * 111.14195 * 7 5 3 9 9 C 1.38244 * 119.99575 * 179.81237 * 8 7 5 10 10 C 1.38233 * 120.00248 * 0.39156 * 9 8 7 11 11 C 1.38233 * 119.99615 * 359.86279 * 10 9 8 12 12 C 1.38231 * 120.00602 * 359.94781 * 11 10 9 13 13 N 1.46499 * 109.47033 * 180.02562 * 5 3 2 14 14 C 1.46505 * 119.99788 * 54.83283 * 13 5 3 15 15 C 1.34778 * 120.00278 * 234.83237 * 13 5 3 16 16 O 1.21683 * 119.99712 * 359.97438 * 15 13 5 17 17 C 1.46375 * 119.99956 * 180.02562 * 15 13 5 18 18 H 1.07999 * 119.99987 * 354.79152 * 17 15 13 19 19 C 1.40050 * 119.99853 * 174.78912 * 17 15 13 20 20 N 1.30676 * 119.99820 * 6.26405 * 19 17 15 21 21 Si 1.86800 * 119.99885 * 186.26432 * 19 17 15 22 22 H 1.48504 * 109.46870 * 94.97912 * 21 19 17 23 23 H 1.48496 * 109.47086 * 214.97688 * 21 19 17 24 24 H 1.48497 * 109.47147 * 334.98069 * 21 19 17 25 25 H 1.09000 * 109.47116 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46735 * 299.99468 * 1 2 3 27 27 H 1.08999 * 109.47055 * 59.99692 * 1 2 3 28 28 H 1.07996 * 120.00421 * 359.97438 * 8 7 5 29 29 H 1.08000 * 119.99480 * 180.23167 * 9 8 7 30 30 H 1.07999 * 120.00250 * 179.83805 * 10 9 8 31 31 H 1.08000 * 119.99713 * 179.97438 * 11 10 9 32 32 H 1.07997 * 120.00351 * 180.02562 * 12 11 10 33 33 H 1.08997 * 109.47057 * 95.49410 * 14 13 5 34 34 H 1.09004 * 109.47154 * 215.49023 * 14 13 5 35 35 H 1.09003 * 109.47060 * 335.49398 * 14 13 5 36 36 H 0.96994 * 119.99562 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9564 0.7805 -0.8892 7 6 4.1047 0.5918 1.2313 8 6 4.8052 -0.5940 1.1131 9 6 5.3024 -1.2185 2.2418 10 6 5.0921 -0.6614 3.4893 11 6 4.3870 0.5217 3.6079 12 6 3.8932 1.1483 2.4790 13 7 3.9818 2.6796 0.0011 14 6 3.4883 3.5890 1.0383 15 6 4.8179 3.1355 -0.9526 16 8 5.2281 2.3801 -1.8138 17 6 5.2334 4.5391 -0.9517 18 1 4.8055 5.2284 -0.2389 19 6 6.1858 4.9880 -1.8752 20 7 6.6129 4.1868 -2.8151 21 14 6.8455 6.7320 -1.7634 22 1 8.1134 6.7330 -0.9902 23 1 7.0989 7.2540 -3.1303 24 1 5.8488 7.5955 -1.0807 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 4.9664 -1.0312 0.1389 29 1 5.8529 -2.1430 2.1491 30 1 5.4783 -1.1506 4.3713 31 1 4.2224 0.9568 4.5825 32 1 3.3428 2.0728 2.5716 33 1 4.2190 3.6510 1.8448 34 1 3.3350 4.5796 0.6101 35 1 2.5438 3.2131 1.4318 36 1 7.2727 4.4976 -3.4544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274754792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:03 Heat of formation + Delta-G solvation = -100.310742 kcal Electronic energy + Delta-G solvation = -21887.095482 eV Core-core repulsion = 18529.294245 eV Total energy + Delta-G solvation = -3357.801236 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.01879 -40.24107 -39.30897 -37.64156 -35.99917 -34.66899 -32.98898 -31.78681 -29.75395 -28.64361 -27.95885 -26.42621 -23.43669 -23.21334 -22.50410 -20.85472 -19.08702 -18.44639 -18.15088 -17.84309 -17.40310 -17.10972 -16.57343 -16.18512 -15.64304 -15.44585 -15.26926 -14.64932 -14.41533 -14.35041 -14.03262 -13.59063 -13.39145 -13.33746 -13.28446 -13.09172 -12.92630 -12.77978 -12.37536 -12.05596 -11.98838 -11.87251 -11.76502 -11.67363 -10.95499 -9.97924 -9.80865 -9.67335 -9.31947 -8.35060 -6.89840 0.34958 0.50888 1.01262 1.37607 1.39735 1.51219 1.58071 2.22458 2.40985 2.61090 3.02596 3.46238 3.60665 3.86646 3.95017 4.15109 4.23801 4.26637 4.29364 4.30512 4.40137 4.63028 4.64263 4.70801 4.79245 4.91092 5.03403 5.15698 5.21493 5.33659 5.54439 5.58123 5.60393 5.63459 5.98330 6.10777 6.19837 6.62145 6.82397 7.23600 8.34014 8.60224 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017406 B = 0.006128 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.233505 B = 4568.008138 C = 5293.468359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.464 3.536 4 O -0.518 6.518 5 C 0.193 3.807 6 H 0.106 0.894 7 C -0.103 4.103 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.114 4.114 11 C -0.120 4.120 12 C -0.128 4.128 13 N -0.622 5.622 14 C 0.104 3.896 15 C 0.542 3.458 16 O -0.624 6.624 17 C -0.562 4.562 18 H 0.092 0.908 19 C 0.030 3.970 20 N -0.816 5.816 21 Si 0.998 3.002 22 H -0.261 1.261 23 H -0.271 1.271 24 H -0.249 1.249 25 H 0.137 0.863 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.120 0.880 29 H 0.150 0.850 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.126 0.874 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.691 -7.988 13.236 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.306 3.694 4 O -0.407 6.407 5 C 0.086 3.914 6 H 0.124 0.876 7 C -0.105 4.105 8 C -0.133 4.133 9 C -0.138 4.138 10 C -0.132 4.132 11 C -0.138 4.138 12 C -0.146 4.146 13 N -0.358 5.358 14 C -0.038 4.038 15 C 0.349 3.651 16 O -0.511 6.511 17 C -0.598 4.598 18 H 0.110 0.890 19 C -0.186 4.186 20 N -0.446 5.446 21 Si 0.817 3.183 22 H -0.185 1.185 23 H -0.196 1.196 24 H -0.172 1.172 25 H 0.155 0.845 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.138 0.862 29 H 0.168 0.832 30 H 0.174 0.826 31 H 0.169 0.831 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.630 -8.128 12.615 16.406 hybrid contribution -0.017 0.784 -0.678 1.036 sum -6.647 -7.344 11.937 15.511 Atomic orbital electron populations 1.23607 0.74521 1.05942 1.02533 1.86525 1.25257 1.32030 1.83502 1.24228 0.91977 0.81770 0.71443 1.90590 1.67121 1.36971 1.45983 1.18976 0.86361 0.86596 0.99430 0.87591 1.19752 1.01103 0.96309 0.93299 1.21200 0.97418 0.94582 1.00139 1.21434 0.99513 1.00835 0.91985 1.21582 0.97743 0.95636 0.98242 1.21444 0.97857 0.95955 0.98552 1.21480 1.00758 1.00192 0.92188 1.47661 1.50075 1.06752 1.31347 1.21696 0.98005 0.93825 0.90293 1.18728 0.77368 0.89726 0.79238 1.90535 1.60288 1.59791 1.40517 1.21457 1.25667 0.93097 1.19565 0.88986 1.27007 0.94902 1.04107 0.92545 1.70179 1.23801 1.38538 1.12035 0.85005 0.79203 0.75498 0.78633 1.18526 1.19610 1.17166 0.84459 0.91461 0.92422 0.86233 0.83214 0.82562 0.83143 0.85613 0.92933 0.92113 0.90947 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.61 10.48 -51.39 -0.54 -12.15 16 3 C 0.46 18.23 6.78 71.24 0.48 18.72 16 4 O -0.52 -22.00 13.92 21.97 0.31 -21.69 16 5 C 0.19 8.36 2.86 43.50 0.12 8.49 16 6 H 0.11 5.15 6.68 -2.39 -0.02 5.14 16 7 C -0.10 -3.73 4.88 -19.87 -0.10 -3.83 16 8 C -0.11 -3.69 9.67 22.27 0.22 -3.48 16 9 C -0.12 -2.96 10.05 22.27 0.22 -2.74 16 10 C -0.11 -2.47 10.05 22.27 0.22 -2.25 16 11 C -0.12 -2.90 10.05 22.27 0.22 -2.68 16 12 C -0.13 -4.00 8.53 22.27 0.19 -3.81 16 13 N -0.62 -30.39 2.57 -836.13 -2.15 -32.54 16 14 C 0.10 4.22 7.23 127.77 0.92 5.15 16 15 C 0.54 32.45 7.61 86.36 0.66 33.11 16 16 O -0.62 -42.24 14.38 -4.30 -0.06 -42.30 16 17 C -0.56 -32.47 8.75 24.83 0.22 -32.25 16 18 H 0.09 4.82 6.07 -2.91 -0.02 4.80 16 19 C 0.03 1.69 5.49 85.30 0.47 2.16 16 20 N -0.82 -50.12 11.85 21.84 0.26 -49.86 16 21 Si 1.00 41.27 29.56 68.60 2.03 43.30 16 22 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 25 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.07 1.45 8.13 -2.39 -0.02 1.43 16 27 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 28 H 0.12 3.82 7.97 -2.91 -0.02 3.80 16 29 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 30 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.13 3.88 4.65 -2.91 -0.01 3.86 16 33 H 0.05 1.93 7.35 -2.39 -0.02 1.91 16 34 H 0.06 2.55 6.35 -2.39 -0.02 2.53 16 35 H 0.07 2.67 4.93 -2.39 -0.01 2.66 16 36 H 0.28 15.29 8.29 -92.71 -0.77 14.52 16 Total: -1.00 -79.80 307.46 6.00 -73.80 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 1.11 Total: 23.03 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 5.05 Total: 18.41 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -1.89 Total: -82.39 kcal Atomic # 8 Polarization: -75.84 SS G_CDS: -0.29 Total: -76.14 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -79.80 6.00 -73.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274754792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.514 kcal (2) G-P(sol) polarization free energy of solvation -79.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds