Wall clock time and date at job start Mon Mar 30 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 117.00053 * 2 1 4 4 C 1.38798 * 120.08227 * 0.02631 * 3 2 1 5 5 C 1.38003 * 119.92568 * 179.88809 * 4 3 2 6 6 C 1.38558 * 120.39263 * 0.02562 * 5 4 3 7 7 C 1.38426 * 119.91279 * 0.15589 * 6 5 4 8 8 C 1.38451 * 120.08070 * 179.97438 * 3 2 1 9 9 O 1.35856 * 121.79180 * 179.70910 * 7 6 5 10 10 C 1.42822 * 117.87259 * 17.25486 * 9 7 6 11 11 C 1.53411 * 108.36875 * 310.79483 * 10 9 7 12 12 H 1.08994 * 109.69901 * 304.99597 * 11 10 9 13 13 N 1.46495 * 109.69940 * 184.43346 * 11 10 9 14 14 C 1.34777 * 119.99752 * 85.00341 * 13 11 10 15 15 O 1.21685 * 119.99939 * 359.97438 * 14 13 11 16 16 C 1.46375 * 119.99838 * 180.02562 * 14 13 11 17 17 H 1.07994 * 120.00400 * 11.99307 * 16 14 13 18 18 C 1.40048 * 119.99818 * 192.00359 * 16 14 13 19 19 N 1.30679 * 120.00035 * 205.77491 * 18 16 14 20 20 Si 1.86800 * 120.00196 * 25.77198 * 18 16 14 21 21 H 1.48499 * 109.47250 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47209 * 120.00083 * 20 18 16 23 23 H 1.48498 * 109.47190 * 240.00343 * 20 18 16 24 24 C 1.50791 * 118.70317 * 180.39495 * 6 5 4 25 25 H 1.08997 * 109.47257 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47137 * 299.99671 * 1 2 3 27 27 H 1.09002 * 109.47360 * 59.99421 * 1 2 3 28 28 H 1.07998 * 120.03522 * 359.87163 * 4 3 2 29 29 H 1.07995 * 119.80407 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.91378 * 0.05165 * 8 3 2 31 31 H 1.08998 * 109.68606 * 191.08303 * 10 9 7 32 32 H 1.08999 * 109.71449 * 70.53577 * 10 9 7 33 33 H 0.96997 * 120.00508 * 265.00509 * 13 11 10 34 34 H 0.96998 * 119.99526 * 5.09034 * 19 18 16 35 35 H 1.08997 * 109.43368 * 77.56001 * 24 6 5 36 36 H 1.09000 * 109.43327 * 317.69333 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2917 2.3760 0.0006 5 6 1.9216 3.6039 0.0029 6 6 3.3049 3.6821 0.0042 7 6 4.0619 2.5231 -0.0002 8 6 3.4285 1.2852 0.0005 9 8 5.4200 2.5553 -0.0050 10 6 6.0603 3.7759 0.3689 11 6 5.4153 4.9219 -0.4211 12 1 5.4638 4.7054 -1.4882 13 7 6.1207 6.1745 -0.1389 14 6 7.2296 6.4949 -0.8347 15 8 7.6451 5.7435 -1.6969 16 6 7.9347 7.7462 -0.5523 17 1 7.6894 8.3168 0.3311 18 6 8.9273 8.2036 -1.4281 19 7 9.8798 8.9819 -0.9869 20 14 8.8897 7.7010 -3.2268 21 1 7.7174 6.8228 -3.4711 22 1 8.7850 8.9137 -4.0776 23 1 10.1366 6.9674 -3.5620 24 6 3.9533 5.0434 0.0158 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.2131 2.3217 -0.0011 29 1 1.3328 4.5092 0.0029 30 1 4.0166 0.3794 0.0001 31 1 7.1231 3.7203 0.1333 32 1 5.9297 3.9474 1.4374 33 1 5.7897 6.7733 0.5487 34 1 9.9421 9.1831 -0.0401 35 1 3.9089 5.4576 1.0230 36 1 3.4233 5.7034 -0.6708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274826917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:38 Heat of formation + Delta-G solvation = -100.536025 kcal Electronic energy + Delta-G solvation = -20956.293226 eV Core-core repulsion = 17598.482221 eV Total energy + Delta-G solvation = -3357.811005 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.83100 -39.43248 -37.77158 -36.49431 -34.67919 -32.90205 -31.74985 -30.41361 -29.24144 -27.42471 -25.94396 -25.47854 -22.95334 -22.54046 -20.11539 -19.72593 -18.56395 -18.00912 -16.95754 -16.34210 -15.98159 -15.74558 -15.35601 -15.10766 -14.87650 -14.29271 -13.99577 -13.70345 -13.52767 -13.22567 -12.83906 -12.80538 -12.54608 -12.51335 -12.12102 -11.92127 -11.55381 -11.25962 -10.82663 -10.70818 -10.58241 -10.42842 -10.04067 -9.38711 -8.87337 -8.53748 -8.14742 -7.99000 -7.76251 -7.06239 -4.90552 1.28889 1.34756 2.85670 3.48298 3.55505 3.58269 3.72330 4.00911 4.17605 4.34105 4.51771 4.64579 4.78320 4.84353 4.88773 4.92509 5.01795 5.13257 5.18026 5.22775 5.38160 5.46508 5.54869 5.63760 5.83155 5.87185 6.09552 6.17223 6.20345 6.31751 6.40769 6.50014 7.20843 7.49335 7.51638 7.67373 7.75479 8.09811 8.79818 9.06302 10.11640 10.24152 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.044048 B = 0.003601 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.522107 B = 7773.094541 C = 7859.379753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.154 3.846 4 C -0.242 4.242 5 C -0.044 4.044 6 C -0.188 4.188 7 C 0.177 3.823 8 C -0.188 4.188 9 O -0.309 6.309 10 C 0.052 3.948 11 C 0.121 3.879 12 H 0.093 0.907 13 N -0.749 5.749 14 C 0.549 3.451 15 O -0.616 6.616 16 C -0.613 4.613 17 H 0.071 0.929 18 C 0.076 3.924 19 N -0.822 5.822 20 Si 1.082 2.918 21 H -0.251 1.251 22 H -0.307 1.307 23 H -0.286 1.286 24 C -0.080 4.080 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.137 0.863 31 H 0.116 0.884 32 H 0.061 0.939 33 H 0.388 0.612 34 H 0.281 0.719 35 H 0.077 0.923 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.566 -11.808 4.436 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.109 3.891 4 C -0.261 4.261 5 C -0.062 4.062 6 C -0.189 4.189 7 C 0.131 3.869 8 C -0.207 4.207 9 O -0.221 6.221 10 C -0.024 4.024 11 C 0.014 3.986 12 H 0.111 0.889 13 N -0.403 5.403 14 C 0.357 3.643 15 O -0.506 6.506 16 C -0.649 4.649 17 H 0.089 0.911 18 C -0.145 4.145 19 N -0.448 5.448 20 Si 0.908 3.092 21 H -0.176 1.176 22 H -0.236 1.236 23 H -0.212 1.212 24 C -0.117 4.117 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.155 0.845 31 H 0.134 0.866 32 H 0.079 0.921 33 H 0.220 0.780 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.282 -12.425 2.429 21.423 hybrid contribution -1.224 0.575 2.199 2.582 sum -18.506 -11.850 4.628 22.457 Atomic orbital electron populations 1.23045 0.78356 1.03792 1.01432 1.86048 1.21352 1.26917 1.88691 1.18500 0.91380 0.84096 0.95143 1.21026 0.99822 0.92116 1.13157 1.20641 0.92954 0.97203 0.95408 1.19750 0.94126 0.94304 1.10749 1.18359 0.83101 0.92256 0.93194 1.19573 0.91405 0.96915 1.12808 1.86018 1.15610 1.37575 1.82945 1.23635 0.98278 0.82004 0.98479 1.21141 0.90134 0.86473 1.00867 0.88924 1.45875 1.30352 1.20860 1.43194 1.18367 0.78394 0.87727 0.79790 1.90467 1.69156 1.54134 1.36876 1.21866 1.22060 1.08244 1.12687 0.91106 1.26911 0.89111 0.90847 1.07593 1.70601 1.26069 1.29323 1.18809 0.83352 0.78938 0.74780 0.72084 1.17562 1.23633 1.21180 1.20707 0.95157 0.93415 1.02436 0.88328 0.92636 0.92590 0.85489 0.85489 0.84500 0.86600 0.92086 0.77972 0.90793 0.90433 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.60 10.50 -19.41 -0.20 -3.80 16 3 C 0.15 1.95 6.68 -39.30 -0.26 1.69 16 4 C -0.24 -2.69 9.04 -39.46 -0.36 -3.05 16 5 C -0.04 -0.51 9.66 -39.55 -0.38 -0.90 16 6 C -0.19 -2.64 5.75 -104.39 -0.60 -3.24 16 7 C 0.18 2.75 6.47 -39.21 -0.25 2.50 16 8 C -0.19 -2.67 9.87 -39.20 -0.39 -3.06 16 9 O -0.31 -5.31 10.27 -19.29 -0.20 -5.51 16 10 C 0.05 0.90 6.62 37.37 0.25 1.15 16 11 C 0.12 2.17 2.68 -67.68 -0.18 1.99 16 12 H 0.09 1.93 7.61 -51.93 -0.40 1.54 16 13 N -0.75 -15.23 5.10 -54.98 -0.28 -15.51 16 14 C 0.55 14.19 7.29 -12.99 -0.09 14.10 16 15 O -0.62 -17.47 12.45 5.20 0.06 -17.40 16 16 C -0.61 -16.85 9.81 -35.63 -0.35 -17.20 16 17 H 0.07 1.92 8.06 -52.49 -0.42 1.50 16 18 C 0.08 2.14 5.48 -17.36 -0.10 2.04 16 19 N -0.82 -23.33 13.65 55.55 0.76 -22.57 16 20 Si 1.08 27.47 27.33 -169.99 -4.65 22.83 16 21 H -0.25 -6.62 5.81 56.52 0.33 -6.29 16 22 H -0.31 -7.38 7.11 56.52 0.40 -6.97 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 C -0.08 -1.12 5.35 -27.80 -0.15 -1.27 16 25 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 27 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.13 1.06 6.31 -52.49 -0.33 0.73 16 29 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.12 2.21 8.14 -51.93 -0.42 1.79 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.39 6.92 8.55 -40.82 -0.35 6.57 16 34 H 0.28 7.69 8.72 -40.82 -0.36 7.33 16 35 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 305.17 15.07 4.60 4.60 Total: -1.00 -31.98 305.17 -6.26 -38.24 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.48 Total: 3.20 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -1.87 Total: -4.07 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.48 Total: -38.08 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.34 Total: -26.71 kcal Atomic # 14 Polarization: 27.47 SS G_CDS: -4.65 Total: 22.83 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.98 -6.26 -38.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274826917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.299 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds