Wall clock time and date at job start Mon Mar 30 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 117.00053 * 2 1 4 4 C 1.38798 * 120.08227 * 0.02631 * 3 2 1 5 5 C 1.38003 * 119.92568 * 179.88809 * 4 3 2 6 6 C 1.38558 * 120.39263 * 0.02562 * 5 4 3 7 7 C 1.38426 * 119.91279 * 0.15589 * 6 5 4 8 8 C 1.38451 * 120.08070 * 179.97438 * 3 2 1 9 9 O 1.35856 * 121.79180 * 179.70910 * 7 6 5 10 10 C 1.42822 * 117.87259 * 17.25486 * 9 7 6 11 11 C 1.53411 * 108.36875 * 310.79483 * 10 9 7 12 12 H 1.08994 * 109.69901 * 304.99597 * 11 10 9 13 13 N 1.46495 * 109.69940 * 184.43346 * 11 10 9 14 14 C 1.34777 * 119.99752 * 85.00341 * 13 11 10 15 15 O 1.21685 * 119.99939 * 359.97438 * 14 13 11 16 16 C 1.46375 * 119.99838 * 180.02562 * 14 13 11 17 17 H 1.07994 * 120.00400 * 11.99307 * 16 14 13 18 18 C 1.40048 * 119.99818 * 192.00359 * 16 14 13 19 19 N 1.30679 * 120.00035 * 205.77491 * 18 16 14 20 20 Si 1.86800 * 120.00196 * 25.77198 * 18 16 14 21 21 H 1.48499 * 109.47250 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47209 * 120.00083 * 20 18 16 23 23 H 1.48498 * 109.47190 * 240.00343 * 20 18 16 24 24 C 1.50791 * 118.70317 * 180.39495 * 6 5 4 25 25 H 1.08997 * 109.47257 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47137 * 299.99671 * 1 2 3 27 27 H 1.09002 * 109.47360 * 59.99421 * 1 2 3 28 28 H 1.07998 * 120.03522 * 359.87163 * 4 3 2 29 29 H 1.07995 * 119.80407 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.91378 * 0.05165 * 8 3 2 31 31 H 1.08998 * 109.68606 * 191.08303 * 10 9 7 32 32 H 1.08999 * 109.71449 * 70.53577 * 10 9 7 33 33 H 0.96997 * 120.00508 * 265.00509 * 13 11 10 34 34 H 0.96998 * 119.99526 * 5.09034 * 19 18 16 35 35 H 1.08997 * 109.43368 * 77.56001 * 24 6 5 36 36 H 1.09000 * 109.43327 * 317.69333 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2917 2.3760 0.0006 5 6 1.9216 3.6039 0.0029 6 6 3.3049 3.6821 0.0042 7 6 4.0619 2.5231 -0.0002 8 6 3.4285 1.2852 0.0005 9 8 5.4200 2.5553 -0.0050 10 6 6.0603 3.7759 0.3689 11 6 5.4153 4.9219 -0.4211 12 1 5.4638 4.7054 -1.4882 13 7 6.1207 6.1745 -0.1389 14 6 7.2296 6.4949 -0.8347 15 8 7.6451 5.7435 -1.6969 16 6 7.9347 7.7462 -0.5523 17 1 7.6894 8.3168 0.3311 18 6 8.9273 8.2036 -1.4281 19 7 9.8798 8.9819 -0.9869 20 14 8.8897 7.7010 -3.2268 21 1 7.7174 6.8228 -3.4711 22 1 8.7850 8.9137 -4.0776 23 1 10.1366 6.9674 -3.5620 24 6 3.9533 5.0434 0.0158 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.2131 2.3217 -0.0011 29 1 1.3328 4.5092 0.0029 30 1 4.0166 0.3794 0.0001 31 1 7.1231 3.7203 0.1333 32 1 5.9297 3.9474 1.4374 33 1 5.7897 6.7733 0.5487 34 1 9.9421 9.1831 -0.0401 35 1 3.9089 5.4576 1.0230 36 1 3.4233 5.7034 -0.6708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274826917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:38 Heat of formation + Delta-G solvation = -123.376560 kcal Electronic energy + Delta-G solvation = -20957.283666 eV Core-core repulsion = 17598.482221 eV Total energy + Delta-G solvation = -3358.801445 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.94817 -40.47639 -39.58263 -37.52122 -36.27707 -35.03828 -33.11893 -31.42246 -30.54715 -28.37438 -27.71297 -26.63858 -24.15469 -23.63554 -21.78992 -21.19269 -20.00692 -19.54424 -18.13105 -17.55586 -17.15652 -17.02049 -16.64298 -16.24297 -16.20864 -15.93173 -15.48517 -15.23689 -14.65135 -14.47949 -14.41685 -14.19267 -14.16155 -13.93063 -13.27698 -12.83774 -12.80324 -12.69230 -12.33906 -12.11247 -11.96069 -11.63178 -11.53727 -11.38461 -11.02231 -10.14586 -9.73069 -9.50573 -9.21924 -8.99726 -7.06635 0.31641 0.34129 1.43888 1.50696 1.88798 1.97317 2.11408 2.43636 2.58859 2.65137 2.88683 3.23752 3.57113 3.71283 3.80477 3.94671 4.03365 4.09794 4.16754 4.39981 4.44166 4.44955 4.51094 4.59484 4.74870 4.84227 4.90530 4.96668 5.15607 5.26378 5.41701 5.50022 5.52920 5.59000 5.91148 5.98983 6.32711 6.43767 6.65494 7.20414 8.07359 8.09709 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.044048 B = 0.003601 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.522107 B = 7773.094541 C = 7859.379753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.153 3.847 4 C -0.231 4.231 5 C -0.038 4.038 6 C -0.200 4.200 7 C 0.147 3.853 8 C -0.207 4.207 9 O -0.328 6.328 10 C 0.059 3.941 11 C 0.122 3.878 12 H 0.059 0.941 13 N -0.734 5.734 14 C 0.549 3.451 15 O -0.644 6.644 16 C -0.630 4.630 17 H 0.069 0.931 18 C 0.042 3.958 19 N -0.838 5.838 20 Si 1.114 2.886 21 H -0.269 1.269 22 H -0.283 1.283 23 H -0.287 1.287 24 C -0.067 4.067 25 H 0.119 0.881 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.162 0.838 29 H 0.160 0.840 30 H 0.130 0.870 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.403 0.597 34 H 0.280 0.720 35 H 0.100 0.900 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.740 -11.923 4.858 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.107 3.893 4 C -0.250 4.250 5 C -0.055 4.055 6 C -0.201 4.201 7 C 0.102 3.898 8 C -0.226 4.226 9 O -0.241 6.241 10 C -0.017 4.017 11 C 0.015 3.985 12 H 0.077 0.923 13 N -0.387 5.387 14 C 0.355 3.645 15 O -0.537 6.537 16 C -0.666 4.666 17 H 0.087 0.913 18 C -0.175 4.175 19 N -0.465 5.465 20 Si 0.939 3.061 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.213 1.213 24 C -0.105 4.105 25 H 0.137 0.863 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.180 0.820 29 H 0.178 0.822 30 H 0.148 0.852 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.238 0.762 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.498 -12.529 2.884 24.196 hybrid contribution -0.404 0.461 2.119 2.206 sum -20.902 -12.068 5.003 24.649 Atomic orbital electron populations 1.23410 0.75853 1.05736 1.02676 1.86040 1.23931 1.26454 1.88350 1.18609 0.90921 0.85315 0.94416 1.21414 1.01477 0.91115 1.10968 1.20991 0.91954 0.98801 0.93792 1.19833 0.95253 0.93380 1.11665 1.18621 0.82266 0.93532 0.95380 1.19672 0.92633 0.96403 1.13919 1.85971 1.17222 1.37152 1.83766 1.23396 0.96847 0.82113 0.99372 1.21182 0.92809 0.85268 0.99231 0.92285 1.45510 1.28837 1.21912 1.42402 1.18249 0.79443 0.87021 0.79775 1.90452 1.70187 1.54888 1.38147 1.22029 1.22662 1.09069 1.12791 0.91324 1.27680 0.89193 0.90858 1.09782 1.70622 1.26608 1.30338 1.18889 0.82901 0.77944 0.75006 0.70269 1.19490 1.21107 1.21313 1.20627 0.91847 0.94101 1.03887 0.86311 0.91165 0.91387 0.82050 0.82241 0.85181 0.89402 0.90064 0.76190 0.90899 0.88154 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.87 10.50 -92.35 -0.97 -7.84 16 3 C 0.15 3.57 6.68 22.45 0.15 3.72 16 4 C -0.23 -4.26 9.04 22.35 0.20 -4.06 16 5 C -0.04 -0.74 9.66 22.29 0.22 -0.52 16 6 C -0.20 -5.21 5.75 -19.71 -0.11 -5.32 16 7 C 0.15 4.54 6.47 22.51 0.15 4.68 16 8 C -0.21 -5.86 9.87 22.52 0.22 -5.64 16 9 O -0.33 -11.61 10.27 -91.93 -0.94 -12.56 16 10 C 0.06 2.07 6.62 72.12 0.48 2.55 16 11 C 0.12 4.34 2.68 45.15 0.12 4.46 16 12 H 0.06 2.52 7.61 -2.39 -0.02 2.50 16 13 N -0.73 -29.43 5.10 -446.07 -2.27 -31.71 16 14 C 0.55 28.57 7.29 86.36 0.63 29.20 16 15 O -0.64 -37.22 12.45 -4.30 -0.05 -37.28 16 16 C -0.63 -34.77 9.81 24.83 0.24 -34.53 16 17 H 0.07 3.73 8.06 -2.91 -0.02 3.71 16 18 C 0.04 2.37 5.48 85.30 0.47 2.84 16 19 N -0.84 -47.65 13.65 21.84 0.30 -47.36 16 20 Si 1.11 55.97 27.33 68.60 1.88 57.84 16 21 H -0.27 -14.27 5.81 99.48 0.58 -13.70 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 24 C -0.07 -1.74 5.35 29.90 0.16 -1.58 16 25 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 27 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 28 H 0.16 1.83 6.31 -2.91 -0.02 1.81 16 29 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 31 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.40 13.76 8.55 -92.71 -0.79 12.97 16 34 H 0.28 15.45 8.72 -92.71 -0.81 14.64 16 35 H 0.10 2.15 8.10 -2.39 -0.02 2.13 16 36 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -70.10 305.17 2.11 -67.99 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.15 Total: 13.82 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 4.03 Total: -2.91 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -1.98 Total: -79.06 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -1.97 Total: -57.67 kcal Atomic # 14 Polarization: 55.97 SS G_CDS: 1.88 Total: 57.84 kcal Total: -70.10 2.11 -67.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274826917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.391 kcal (2) G-P(sol) polarization free energy of solvation -70.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds