Wall clock time and date at job start Mon Mar 30 2020 01:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45195 * 109.47353 * 2 1 4 4 C 1.34705 * 117.00530 * 179.97438 * 3 2 1 5 5 O 1.21462 * 119.99418 * 0.02562 * 4 3 2 6 6 C 1.47847 * 120.00713 * 180.02562 * 4 3 2 7 7 C 1.39656 * 120.00256 * 180.02562 * 6 4 3 8 8 C 1.37747 * 120.00247 * 180.27999 * 7 6 4 9 9 C 1.39668 * 119.99712 * 359.51065 * 8 7 6 10 10 C 1.47852 * 120.00309 * 180.21774 * 9 8 7 11 11 O 1.21581 * 120.00484 * 134.67159 * 10 9 8 12 12 N 1.34781 * 119.99751 * 314.67210 * 10 9 8 13 13 C 1.46497 * 119.99825 * 1.30807 * 12 10 9 14 14 C 1.36715 * 119.99981 * 181.30731 * 12 10 9 15 15 H 1.08002 * 119.99876 * 297.61254 * 14 12 10 16 16 C 1.39156 * 120.00021 * 117.61257 * 14 12 10 17 17 N 1.31285 * 120.00365 * 27.67905 * 16 14 12 18 18 Si 1.86805 * 119.99790 * 207.68185 * 16 14 12 19 19 H 1.48495 * 109.47031 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46963 * 119.99893 * 18 16 14 21 21 H 1.48496 * 109.47241 * 239.99712 * 18 16 14 22 22 C 1.39671 * 119.99751 * 0.48590 * 9 8 7 23 23 C 1.37743 * 120.00198 * 359.74847 * 22 9 8 24 24 H 1.09007 * 109.47084 * 300.00010 * 1 2 3 25 25 H 1.09003 * 109.47312 * 59.99526 * 1 2 3 26 26 H 1.09001 * 109.47429 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47084 * 239.99990 * 2 1 3 28 28 H 1.09001 * 109.46852 * 120.00237 * 2 1 3 29 29 H 1.08000 * 119.99894 * 359.97438 * 7 6 4 30 30 H 1.07995 * 120.00348 * 179.71958 * 8 7 6 31 31 H 1.08999 * 109.47669 * 113.33826 * 13 12 10 32 32 H 1.09010 * 109.46993 * 233.33731 * 13 12 10 33 33 H 1.08996 * 109.47531 * 353.33010 * 13 12 10 34 34 H 0.97001 * 120.00458 * 180.02562 * 17 16 14 35 35 H 1.08004 * 120.00198 * 179.72670 * 22 9 8 36 36 H 1.07992 * 120.00550 * 179.97438 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3494 1.5455 0.0005 5 8 4.0893 0.5822 0.0005 6 6 3.9146 2.9116 0.0011 7 6 5.2992 3.0946 0.0012 8 6 5.8258 4.3674 0.0076 9 6 4.9750 5.4751 0.0037 10 6 5.5401 6.8413 0.0057 11 8 5.0916 7.6859 -0.7452 12 7 6.5525 7.1506 0.8399 13 6 7.1121 6.1254 1.7243 14 6 7.0573 8.4210 0.8609 15 1 7.5201 8.8328 -0.0238 16 6 6.9747 9.1835 2.0220 17 7 6.9397 8.5930 3.1940 18 14 6.9134 11.0473 1.9130 19 1 6.9673 11.4619 0.4881 20 1 5.6521 11.5377 2.5244 21 1 8.0728 11.6241 2.6400 22 6 3.5903 5.2921 0.0036 23 6 3.0638 4.0193 0.0021 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.9570 2.2381 0.0011 30 1 6.8964 4.5089 0.0121 31 1 8.1370 5.9070 1.4246 32 1 7.1036 6.4883 2.7522 33 1 6.5119 5.2183 1.6544 34 1 6.8818 9.1245 4.0034 35 1 2.9324 6.1486 0.0051 36 1 1.9932 3.8777 0.0024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291475799.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:04 Heat of formation + Delta-G solvation = -82.422290 kcal Electronic energy + Delta-G solvation = -20717.249445 eV Core-core repulsion = 17360.223910 eV Total energy + Delta-G solvation = -3357.025535 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.60387 -39.39847 -37.53623 -36.55699 -34.67554 -32.43104 -31.89125 -30.88844 -30.76588 -26.40528 -25.64863 -24.13241 -22.99778 -22.35941 -21.14913 -19.57891 -18.03946 -17.27979 -16.85240 -16.66339 -16.20580 -15.27732 -14.73755 -14.48148 -14.46184 -14.28032 -13.79045 -13.63462 -13.31752 -13.08078 -12.94039 -12.54384 -12.15285 -12.08683 -11.87077 -11.72092 -11.48823 -11.23122 -11.05285 -10.82800 -10.71738 -10.59182 -10.49477 -10.30059 -8.89396 -8.82932 -8.73783 -8.50114 -7.38375 -6.43373 -4.22351 0.66287 1.51482 2.49174 2.52507 3.16781 3.27871 3.36275 3.65875 4.02494 4.25630 4.53211 4.63888 4.68004 4.75127 4.94374 4.99638 5.01217 5.05960 5.38046 5.47964 5.50039 5.50809 5.64037 5.69723 5.90809 6.13356 6.21524 6.27390 6.37045 6.46091 6.58601 6.67575 6.93528 7.17845 7.53646 7.69076 8.32980 8.49067 9.08595 9.17644 9.90081 10.54421 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037368 B = 0.003584 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.119578 B = 7810.316966 C = 8022.434297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.354 6.354 4 C 0.514 3.486 5 O -0.512 6.512 6 C -0.134 4.134 7 C -0.061 4.061 8 C -0.109 4.109 9 C -0.055 4.055 10 C 0.499 3.501 11 O -0.564 6.564 12 N -0.433 5.433 13 C 0.052 3.948 14 C -0.337 4.337 15 H 0.084 0.916 16 C 0.068 3.932 17 N -0.849 5.849 18 Si 0.905 3.095 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.283 1.283 22 C -0.095 4.095 23 C -0.066 4.066 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.038 0.962 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.271 0.729 35 H 0.137 0.863 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.594 -14.446 -2.232 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.360 3.640 5 O -0.402 6.402 6 C -0.135 4.135 7 C -0.079 4.079 8 C -0.128 4.128 9 C -0.059 4.059 10 C 0.286 3.714 11 O -0.446 6.446 12 N -0.153 5.153 13 C -0.090 4.090 14 C -0.464 4.464 15 H 0.102 0.898 16 C -0.141 4.141 17 N -0.483 5.483 18 Si 0.731 3.269 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.209 1.209 22 C -0.114 4.114 23 C -0.084 4.084 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.155 0.845 30 H 0.159 0.841 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.155 0.845 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.586 -14.286 -2.358 16.833 hybrid contribution 0.055 0.618 0.228 0.661 sum -8.531 -13.668 -2.131 16.252 Atomic orbital electron populations 1.21812 0.92576 1.02921 1.03679 1.23023 0.95348 0.80147 1.02625 1.86553 1.24013 1.32250 1.84302 1.21290 0.80385 0.89983 0.72330 1.90806 1.60406 1.42548 1.46406 1.19071 0.94101 0.89536 1.10819 1.21121 0.93107 0.97708 0.95995 1.21438 1.00693 0.90994 0.99656 1.20819 0.94334 0.95410 0.95303 1.18563 0.81321 0.86203 0.85278 1.90647 1.61828 1.49565 1.42597 1.43081 1.27982 1.09980 1.34209 1.22487 0.96498 0.91028 0.99021 1.19003 1.39949 0.88585 0.98854 0.89805 1.25734 0.93458 1.00361 0.94556 1.69809 1.43381 1.37124 0.97945 0.86266 0.77850 0.83608 0.79224 1.18740 1.20317 1.20886 1.21189 0.94159 0.97197 0.98880 1.21325 0.99973 0.91262 0.95857 0.91362 0.91392 0.90267 0.91218 0.91186 0.84462 0.84130 0.94376 0.88646 0.93017 0.91889 0.84527 0.84431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.29 37.16 0.38 -0.62 16 2 C 0.06 0.58 6.19 37.16 0.23 0.81 16 3 O -0.35 -4.34 9.46 -40.51 -0.38 -4.73 16 4 C 0.51 7.35 7.90 34.66 0.27 7.62 16 5 O -0.51 -8.21 16.12 -19.24 -0.31 -8.52 16 6 C -0.13 -1.96 5.88 -104.90 -0.62 -2.58 16 7 C -0.06 -0.90 9.58 -39.23 -0.38 -1.28 16 8 C -0.11 -1.79 7.29 -39.23 -0.29 -2.08 16 9 C -0.05 -1.06 5.11 -104.89 -0.54 -1.60 16 10 C 0.50 12.20 7.22 -12.32 -0.09 12.11 16 11 O -0.56 -15.68 16.95 5.29 0.09 -15.59 16 12 N -0.43 -10.94 2.89 -123.28 -0.36 -11.30 16 13 C 0.05 1.13 9.02 59.85 0.54 1.67 16 14 C -0.34 -9.28 8.50 -15.03 -0.13 -9.41 16 15 H 0.08 2.37 7.97 -52.49 -0.42 1.95 16 16 C 0.07 1.80 5.46 -17.44 -0.10 1.70 16 17 N -0.85 -22.46 11.46 55.51 0.64 -21.82 16 18 Si 0.91 20.73 29.63 -169.99 -5.04 15.69 16 19 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.10 -1.61 9.67 -39.23 -0.38 -1.99 16 23 C -0.07 -0.94 9.60 -39.23 -0.38 -1.32 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.14 1.81 7.64 -52.49 -0.40 1.41 16 30 H 0.14 2.19 6.66 -52.49 -0.35 1.84 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 2.26 5.99 -51.92 -0.31 1.95 16 33 H 0.05 0.96 4.32 -51.93 -0.22 0.74 16 34 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 35 H 0.14 2.27 8.06 -52.48 -0.42 1.85 16 36 H 0.14 1.61 7.60 -52.49 -0.40 1.21 16 LS Contribution 314.94 15.07 4.75 4.75 Total: -1.00 -31.66 314.94 -6.27 -37.93 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.20 Total: 0.54 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -1.46 Total: 3.05 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.28 Total: -33.12 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.60 Total: -28.84 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.04 Total: 15.69 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.66 -6.27 -37.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291475799.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.496 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds