Wall clock time and date at job start Mon Mar 30 2020 01:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45195 * 109.47353 * 2 1 4 4 C 1.34705 * 117.00530 * 179.97438 * 3 2 1 5 5 O 1.21462 * 119.99418 * 0.02562 * 4 3 2 6 6 C 1.47847 * 120.00713 * 180.02562 * 4 3 2 7 7 C 1.39656 * 120.00256 * 180.02562 * 6 4 3 8 8 C 1.37747 * 120.00247 * 180.27999 * 7 6 4 9 9 C 1.39668 * 119.99712 * 359.51065 * 8 7 6 10 10 C 1.47852 * 120.00309 * 180.21774 * 9 8 7 11 11 O 1.21581 * 120.00484 * 134.67159 * 10 9 8 12 12 N 1.34781 * 119.99751 * 314.67210 * 10 9 8 13 13 C 1.46497 * 119.99825 * 1.30807 * 12 10 9 14 14 C 1.36715 * 119.99981 * 181.30731 * 12 10 9 15 15 H 1.08002 * 119.99876 * 297.61254 * 14 12 10 16 16 C 1.39156 * 120.00021 * 117.61257 * 14 12 10 17 17 N 1.31285 * 120.00365 * 27.67905 * 16 14 12 18 18 Si 1.86805 * 119.99790 * 207.68185 * 16 14 12 19 19 H 1.48495 * 109.47031 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46963 * 119.99893 * 18 16 14 21 21 H 1.48496 * 109.47241 * 239.99712 * 18 16 14 22 22 C 1.39671 * 119.99751 * 0.48590 * 9 8 7 23 23 C 1.37743 * 120.00198 * 359.74847 * 22 9 8 24 24 H 1.09007 * 109.47084 * 300.00010 * 1 2 3 25 25 H 1.09003 * 109.47312 * 59.99526 * 1 2 3 26 26 H 1.09001 * 109.47429 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47084 * 239.99990 * 2 1 3 28 28 H 1.09001 * 109.46852 * 120.00237 * 2 1 3 29 29 H 1.08000 * 119.99894 * 359.97438 * 7 6 4 30 30 H 1.07995 * 120.00348 * 179.71958 * 8 7 6 31 31 H 1.08999 * 109.47669 * 113.33826 * 13 12 10 32 32 H 1.09010 * 109.46993 * 233.33731 * 13 12 10 33 33 H 1.08996 * 109.47531 * 353.33010 * 13 12 10 34 34 H 0.97001 * 120.00458 * 180.02562 * 17 16 14 35 35 H 1.08004 * 120.00198 * 179.72670 * 22 9 8 36 36 H 1.07992 * 120.00550 * 179.97438 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3494 1.5455 0.0005 5 8 4.0893 0.5822 0.0005 6 6 3.9146 2.9116 0.0011 7 6 5.2992 3.0946 0.0012 8 6 5.8258 4.3674 0.0076 9 6 4.9750 5.4751 0.0037 10 6 5.5401 6.8413 0.0057 11 8 5.0916 7.6859 -0.7452 12 7 6.5525 7.1506 0.8399 13 6 7.1121 6.1254 1.7243 14 6 7.0573 8.4210 0.8609 15 1 7.5201 8.8328 -0.0238 16 6 6.9747 9.1835 2.0220 17 7 6.9397 8.5930 3.1940 18 14 6.9134 11.0473 1.9130 19 1 6.9673 11.4619 0.4881 20 1 5.6521 11.5377 2.5244 21 1 8.0728 11.6241 2.6400 22 6 3.5903 5.2921 0.0036 23 6 3.0638 4.0193 0.0021 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.9570 2.2381 0.0011 30 1 6.8964 4.5089 0.0121 31 1 8.1370 5.9070 1.4246 32 1 7.1036 6.4883 2.7522 33 1 6.5119 5.2183 1.6544 34 1 6.8818 9.1245 4.0034 35 1 2.9324 6.1486 0.0051 36 1 1.9932 3.8777 0.0024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291475799.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:03 Heat of formation + Delta-G solvation = -100.687577 kcal Electronic energy + Delta-G solvation = -20718.041488 eV Core-core repulsion = 17360.223910 eV Total energy + Delta-G solvation = -3357.817577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.74960 -40.92421 -39.06042 -37.63832 -36.64007 -34.11897 -33.00234 -32.15680 -32.00283 -28.22884 -27.22001 -25.61216 -24.01655 -23.53866 -22.36629 -21.19520 -19.20562 -19.05309 -18.21911 -17.77449 -17.59454 -17.11560 -16.26279 -16.22466 -15.76349 -15.29002 -15.19053 -15.14222 -14.56829 -14.43634 -14.00486 -13.78745 -13.57489 -13.44606 -13.33164 -12.99847 -12.90103 -12.76577 -12.53064 -12.42009 -12.15408 -12.10951 -11.70467 -11.52229 -10.75407 -10.65535 -10.12210 -9.98851 -9.36224 -8.42689 -6.30269 -0.61990 0.27079 1.24836 1.34391 1.40583 1.53265 1.54894 2.03838 2.24513 2.69921 2.73311 3.06180 3.53222 3.79116 3.86088 3.91352 4.04512 4.09580 4.21070 4.32725 4.37442 4.56312 4.66052 4.80392 4.88220 4.93686 4.96099 5.05502 5.13708 5.18413 5.27831 5.34468 5.40863 5.55600 5.66233 6.24951 6.56277 6.61665 7.08802 7.25974 7.95132 8.54119 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037368 B = 0.003584 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.119578 B = 7810.316966 C = 8022.434297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.353 6.353 4 C 0.520 3.480 5 O -0.530 6.530 6 C -0.128 4.128 7 C -0.052 4.052 8 C -0.105 4.105 9 C -0.082 4.082 10 C 0.493 3.507 11 O -0.611 6.611 12 N -0.448 5.448 13 C 0.059 3.941 14 C -0.373 4.373 15 H 0.061 0.939 16 C 0.033 3.967 17 N -0.864 5.864 18 Si 0.965 3.035 19 H -0.275 1.275 20 H -0.274 1.274 21 H -0.264 1.264 22 C -0.100 4.100 23 C -0.048 4.048 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.158 0.842 30 H 0.147 0.853 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.278 0.722 35 H 0.133 0.867 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.873 -16.303 -1.819 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.270 6.270 4 C 0.366 3.634 5 O -0.421 6.421 6 C -0.130 4.130 7 C -0.070 4.070 8 C -0.124 4.124 9 C -0.086 4.086 10 C 0.282 3.718 11 O -0.497 6.497 12 N -0.167 5.167 13 C -0.083 4.083 14 C -0.500 4.500 15 H 0.079 0.921 16 C -0.175 4.175 17 N -0.498 5.498 18 Si 0.788 3.212 19 H -0.199 1.199 20 H -0.199 1.199 21 H -0.188 1.188 22 C -0.119 4.119 23 C -0.066 4.066 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.120 0.880 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.175 0.825 30 H 0.165 0.835 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.151 0.849 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.862 -16.169 -1.918 19.036 hybrid contribution 0.362 1.020 0.067 1.085 sum -9.500 -15.148 -1.851 17.976 Atomic orbital electron populations 1.21841 0.90325 1.04471 1.03784 1.23374 0.97083 0.78621 1.02922 1.86546 1.22593 1.34229 1.83622 1.21110 0.81050 0.89307 0.71931 1.90807 1.61044 1.42972 1.47275 1.19291 0.94251 0.90176 1.09265 1.21279 0.93629 0.97360 0.94718 1.21423 1.00715 0.90793 0.99451 1.20469 0.95665 0.93180 0.99268 1.19257 0.80644 0.87984 0.83907 1.90587 1.63119 1.51772 1.44239 1.43296 1.28490 1.10082 1.34800 1.22463 0.97639 0.91154 0.97021 1.18983 1.41922 0.90476 0.98620 0.92091 1.26356 0.92951 1.04025 0.94137 1.69851 1.43255 1.38428 0.98250 0.85378 0.78463 0.78833 0.78551 1.19947 1.19947 1.18841 1.21238 0.93134 0.98432 0.99064 1.21509 1.01420 0.89702 0.93958 0.91274 0.91240 0.88007 0.90933 0.90969 0.82466 0.83511 0.93208 0.90760 0.90062 0.91226 0.84884 0.81405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 71.98 0.74 -0.72 16 2 C 0.05 0.84 6.19 71.98 0.45 1.29 16 3 O -0.35 -7.57 9.46 -56.14 -0.53 -8.10 16 4 C 0.52 13.31 7.90 70.37 0.56 13.87 16 5 O -0.53 -15.56 16.12 19.96 0.32 -15.23 16 6 C -0.13 -3.40 5.88 -20.05 -0.12 -3.52 16 7 C -0.05 -1.40 9.58 22.50 0.22 -1.18 16 8 C -0.11 -3.32 7.29 22.50 0.16 -3.16 16 9 C -0.08 -3.17 5.11 -20.04 -0.10 -3.28 16 10 C 0.49 24.83 7.22 86.79 0.63 25.45 16 11 O -0.61 -35.47 16.95 -3.97 -0.07 -35.54 16 12 N -0.45 -23.27 2.89 -662.22 -1.91 -25.19 16 13 C 0.06 2.57 9.02 127.77 1.15 3.73 16 14 C -0.37 -21.28 8.50 84.15 0.72 -20.57 16 15 H 0.06 3.65 7.97 -2.91 -0.02 3.63 16 16 C 0.03 1.76 5.46 85.00 0.46 2.23 16 17 N -0.86 -46.06 11.46 21.70 0.25 -45.81 16 18 Si 0.96 43.18 29.63 68.60 2.03 45.21 16 19 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 22 C -0.10 -3.29 9.67 22.50 0.22 -3.07 16 23 C -0.05 -1.24 9.60 22.50 0.22 -1.03 16 24 H 0.07 0.69 8.14 -2.38 -0.02 0.68 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.16 3.66 7.64 -2.91 -0.02 3.64 16 30 H 0.15 4.40 6.66 -2.91 -0.02 4.38 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 3.56 5.99 -2.38 -0.01 3.55 16 33 H 0.08 2.98 4.32 -2.39 -0.01 2.97 16 34 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 35 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 36 H 0.17 3.32 7.60 -2.91 -0.02 3.30 16 Total: -1.00 -69.76 314.94 6.48 -63.28 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.10 Total: 11.33 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 5.29 Total: 10.05 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -1.67 Total: -71.00 kcal Atomic # 8 Polarization: -58.59 SS G_CDS: -0.28 Total: -58.87 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -69.76 6.48 -63.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291475799.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.408 kcal (2) G-P(sol) polarization free energy of solvation -69.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds