Wall clock time and date at job start Mon Mar 30 2020 02:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37102 * 120.00225 * 2 1 4 4 H 1.07995 * 120.00129 * 159.70394 * 3 2 1 5 5 C 1.38952 * 119.99578 * 339.71084 * 3 2 1 6 6 N 1.31409 * 120.00368 * 344.32873 * 5 3 2 7 7 Si 1.86802 * 119.99507 * 164.32820 * 5 3 2 8 8 H 1.48503 * 109.47216 * 265.41172 * 7 5 3 9 9 H 1.48497 * 109.47184 * 145.41054 * 7 5 3 10 10 H 1.48500 * 109.47245 * 25.41150 * 7 5 3 11 11 C 1.34777 * 120.00039 * 180.02562 * 2 1 3 12 12 O 1.21293 * 120.00287 * 179.97438 * 11 2 1 13 13 C 1.50706 * 119.99712 * 359.97438 * 11 2 1 14 14 C 1.53000 * 109.46674 * 180.02562 * 13 11 2 15 15 H 1.08997 * 109.71327 * 54.40979 * 14 13 11 16 16 C 1.53476 * 109.70799 * 174.99993 * 14 13 11 17 17 O 1.43175 * 108.24722 * 179.44062 * 16 14 13 18 18 C 1.36104 * 116.72343 * 313.86898 * 17 16 14 19 19 C 1.38707 * 119.40273 * 197.05799 * 18 17 16 20 20 C 1.38190 * 120.07044 * 180.13559 * 19 18 17 21 21 C 1.38256 * 120.11198 * 0.02722 * 20 19 18 22 22 C 1.38198 * 120.11573 * 359.91919 * 21 20 19 23 23 C 1.38702 * 120.05859 * 0.02562 * 22 21 20 24 24 O 1.36117 * 119.38257 * 180.17166 * 23 22 21 25 25 H 1.09005 * 109.47000 * 85.54092 * 1 2 3 26 26 H 1.09001 * 109.46899 * 205.54127 * 1 2 3 27 27 H 1.08996 * 109.47041 * 325.54217 * 1 2 3 28 28 H 0.96998 * 119.99847 * 180.02562 * 6 5 3 29 29 H 1.08994 * 109.47135 * 300.00104 * 13 11 2 30 30 H 1.09003 * 109.47243 * 60.00337 * 13 11 2 31 31 H 1.08998 * 109.71467 * 299.13048 * 16 14 13 32 32 H 1.08997 * 109.70998 * 59.71119 * 16 14 13 33 33 H 1.08000 * 119.96116 * 0.14818 * 19 18 17 34 34 H 1.08000 * 119.94337 * 179.97438 * 20 19 18 35 35 H 1.07998 * 119.94442 * 179.89810 * 21 20 19 36 36 H 1.07996 * 119.96634 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1803 1.2163 0.3244 5 6 1.5205 2.3533 -0.4173 6 7 0.3953 2.2866 -1.0929 7 14 2.2728 4.0158 -0.0178 8 1 1.6677 4.5460 1.2304 9 1 2.0107 4.9590 -1.1344 10 1 3.7383 3.8641 0.1682 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1672 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3796 -3.6352 -0.0005 15 1 3.0724 -3.5266 0.8339 16 6 1.6220 -4.9640 0.1254 17 8 2.5788 -6.0289 0.1090 18 6 3.5459 -5.9681 -0.8468 19 6 4.2734 -7.1087 -1.1529 20 6 5.2604 -7.0619 -2.1190 21 6 5.5259 -5.8784 -2.7825 22 6 4.8041 -4.7386 -2.4832 23 6 3.8114 -4.7791 -1.5154 24 8 3.1065 -3.6492 -1.2339 25 1 -0.3633 0.0799 -1.0246 26 1 -0.3633 -0.9273 0.4431 27 1 -0.3633 0.8473 0.5814 28 1 -0.0443 3.1005 -1.3845 29 1 0.7591 -2.5302 0.8896 30 1 0.7584 -2.5299 -0.8903 31 1 1.0667 -4.9832 1.0631 32 1 0.9330 -5.0751 -0.7119 33 1 4.0680 -8.0344 -0.6359 34 1 5.8258 -7.9512 -2.3555 35 1 6.2990 -5.8445 -3.5359 36 1 5.0133 -3.8155 -3.0032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294541717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:34 Heat of formation + Delta-G solvation = -70.193602 kcal Electronic energy + Delta-G solvation = -21384.305344 eV Core-core repulsion = 18027.810085 eV Total energy + Delta-G solvation = -3356.495259 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.10987 -38.57826 -37.50922 -36.96013 -34.68351 -32.60472 -31.52586 -30.55484 -29.04412 -27.25585 -26.09241 -24.51840 -23.32855 -22.56059 -20.53396 -19.16553 -18.39567 -17.38235 -16.87003 -16.60472 -16.03121 -15.08597 -15.02542 -14.87376 -14.38363 -14.26285 -14.06583 -13.86863 -13.72633 -13.51484 -12.77573 -12.24076 -12.19272 -11.81926 -11.67371 -11.49542 -11.25479 -11.19573 -11.07354 -10.91571 -10.64175 -10.35617 -10.23634 -10.16974 -9.04198 -8.54443 -8.40286 -7.90734 -7.69631 -6.31982 -3.85643 1.37864 1.42808 3.15292 3.16595 3.25464 3.31461 3.39050 3.83010 3.90063 4.09064 4.30588 4.67899 4.88488 4.93950 5.03844 5.10276 5.13091 5.22945 5.33962 5.47401 5.52376 5.58887 5.75869 5.90518 5.95180 6.12395 6.22308 6.27859 6.34770 6.52820 6.72446 6.82864 7.10156 7.18700 7.57792 7.65449 8.11466 8.48283 9.19307 9.42532 9.97914 10.71959 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.032095 B = 0.004137 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.195393 B = 6766.994101 C = 7323.829917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.448 5.448 3 C -0.306 4.306 4 H 0.100 0.900 5 C 0.030 3.970 6 N -0.882 5.882 7 Si 0.925 3.075 8 H -0.279 1.279 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.447 3.553 12 O -0.578 6.578 13 C -0.125 4.125 14 C 0.075 3.925 15 H 0.091 0.909 16 C 0.024 3.976 17 O -0.310 6.310 18 C 0.041 3.959 19 C -0.117 4.117 20 C -0.128 4.128 21 C -0.117 4.117 22 C -0.116 4.116 23 C 0.067 3.933 24 O -0.281 6.281 25 H 0.061 0.939 26 H 0.027 0.973 27 H 0.065 0.935 28 H 0.267 0.733 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.618 -15.315 -0.011 15.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.167 5.167 3 C -0.434 4.434 4 H 0.118 0.882 5 C -0.173 4.173 6 N -0.521 5.521 7 Si 0.752 3.248 8 H -0.205 1.205 9 H -0.210 1.210 10 H -0.193 1.193 11 C 0.234 3.766 12 O -0.462 6.462 13 C -0.166 4.166 14 C 0.018 3.982 15 H 0.109 0.891 16 C -0.051 4.051 17 O -0.224 6.224 18 C -0.004 4.004 19 C -0.135 4.135 20 C -0.146 4.146 21 C -0.135 4.135 22 C -0.135 4.135 23 C 0.020 3.980 24 O -0.195 6.195 25 H 0.079 0.921 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.139 0.861 32 H 0.095 0.905 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.008 -15.106 -0.055 15.139 hybrid contribution -0.133 1.063 0.163 1.084 sum 0.875 -14.042 0.108 14.070 Atomic orbital electron populations 1.21518 0.81226 0.98388 1.02170 1.43595 1.05435 1.04789 1.62928 1.19681 0.98537 0.83307 1.41878 0.88250 1.25301 0.96616 0.99970 0.95413 1.70017 1.18455 1.28983 1.34693 0.85928 0.79639 0.81333 0.77937 1.20457 1.20967 1.19324 1.19716 0.88074 0.84471 0.84298 1.90552 1.13699 1.86805 1.55187 1.21593 0.97588 0.93241 1.04145 1.22849 0.94119 0.94288 0.86934 0.89140 1.23744 0.90320 0.86167 1.04903 1.86253 1.38695 1.46967 1.50498 1.18961 0.93591 0.93639 0.94220 1.20364 0.97621 0.96100 0.99447 1.20820 0.98463 0.98324 0.97036 1.20888 0.99952 0.92131 1.00548 1.20543 0.94278 0.99904 0.98771 1.19111 0.95166 0.85249 0.98426 1.86520 1.60758 1.33562 1.38673 0.92078 0.95464 0.91615 0.92308 0.88133 0.88965 0.86061 0.90530 0.85236 0.85479 0.85375 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.41 8.57 59.85 0.51 2.92 16 2 N -0.45 -11.44 3.02 -122.19 -0.37 -11.81 16 3 C -0.31 -8.60 9.31 -14.93 -0.14 -8.74 16 4 H 0.10 2.94 7.39 -52.49 -0.39 2.55 16 5 C 0.03 0.80 5.05 -17.47 -0.09 0.71 16 6 N -0.88 -23.54 10.71 55.50 0.59 -22.95 16 7 Si 0.92 20.86 29.58 -169.99 -5.03 15.83 16 8 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 C 0.45 10.81 7.52 -10.98 -0.08 10.73 16 12 O -0.58 -16.19 15.14 -7.29 -0.11 -16.30 16 13 C -0.13 -2.18 3.92 -27.88 -0.11 -2.29 16 14 C 0.08 1.28 2.55 -26.48 -0.07 1.21 16 15 H 0.09 1.67 7.94 -51.93 -0.41 1.26 16 16 C 0.02 0.32 6.56 37.40 0.25 0.56 16 17 O -0.31 -4.63 10.42 -32.85 -0.34 -4.97 16 18 C 0.04 0.64 6.49 -39.14 -0.25 0.38 16 19 C -0.12 -1.50 9.96 -39.43 -0.39 -1.89 16 20 C -0.13 -1.46 10.04 -39.59 -0.40 -1.85 16 21 C -0.12 -1.43 10.04 -39.59 -0.40 -1.83 16 22 C -0.12 -1.79 9.96 -39.42 -0.39 -2.18 16 23 C 0.07 1.15 6.49 -39.14 -0.25 0.90 16 24 O -0.28 -5.55 9.40 -43.78 -0.41 -5.96 16 25 H 0.06 1.40 7.45 -51.93 -0.39 1.01 16 26 H 0.03 0.46 6.28 -51.93 -0.33 0.14 16 27 H 0.07 1.50 7.19 -51.93 -0.37 1.12 16 28 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.10 1.40 7.41 -51.93 -0.39 1.01 16 30 H 0.09 1.51 8.11 -51.93 -0.42 1.09 16 31 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 304.64 15.07 4.59 4.59 Total: -1.00 -33.22 304.64 -7.26 -40.48 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.36 Total: 2.45 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -1.82 Total: -1.37 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.23 Total: -34.75 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.86 Total: -27.23 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.22 -7.26 -40.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294541717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.712 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds