Wall clock time and date at job start Mon Mar 30 2020 02:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37102 * 120.00225 * 2 1 4 4 H 1.07995 * 120.00129 * 159.70394 * 3 2 1 5 5 C 1.38952 * 119.99578 * 339.71084 * 3 2 1 6 6 N 1.31409 * 120.00368 * 344.32873 * 5 3 2 7 7 Si 1.86802 * 119.99507 * 164.32820 * 5 3 2 8 8 H 1.48503 * 109.47216 * 265.41172 * 7 5 3 9 9 H 1.48497 * 109.47184 * 145.41054 * 7 5 3 10 10 H 1.48500 * 109.47245 * 25.41150 * 7 5 3 11 11 C 1.34777 * 120.00039 * 180.02562 * 2 1 3 12 12 O 1.21293 * 120.00287 * 179.97438 * 11 2 1 13 13 C 1.50706 * 119.99712 * 359.97438 * 11 2 1 14 14 C 1.53000 * 109.46674 * 180.02562 * 13 11 2 15 15 H 1.08997 * 109.71327 * 54.40979 * 14 13 11 16 16 C 1.53476 * 109.70799 * 174.99993 * 14 13 11 17 17 O 1.43175 * 108.24722 * 179.44062 * 16 14 13 18 18 C 1.36104 * 116.72343 * 313.86898 * 17 16 14 19 19 C 1.38707 * 119.40273 * 197.05799 * 18 17 16 20 20 C 1.38190 * 120.07044 * 180.13559 * 19 18 17 21 21 C 1.38256 * 120.11198 * 0.02722 * 20 19 18 22 22 C 1.38198 * 120.11573 * 359.91919 * 21 20 19 23 23 C 1.38702 * 120.05859 * 0.02562 * 22 21 20 24 24 O 1.36117 * 119.38257 * 180.17166 * 23 22 21 25 25 H 1.09005 * 109.47000 * 85.54092 * 1 2 3 26 26 H 1.09001 * 109.46899 * 205.54127 * 1 2 3 27 27 H 1.08996 * 109.47041 * 325.54217 * 1 2 3 28 28 H 0.96998 * 119.99847 * 180.02562 * 6 5 3 29 29 H 1.08994 * 109.47135 * 300.00104 * 13 11 2 30 30 H 1.09003 * 109.47243 * 60.00337 * 13 11 2 31 31 H 1.08998 * 109.71467 * 299.13048 * 16 14 13 32 32 H 1.08997 * 109.70998 * 59.71119 * 16 14 13 33 33 H 1.08000 * 119.96116 * 0.14818 * 19 18 17 34 34 H 1.08000 * 119.94337 * 179.97438 * 20 19 18 35 35 H 1.07998 * 119.94442 * 179.89810 * 21 20 19 36 36 H 1.07996 * 119.96634 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1803 1.2163 0.3244 5 6 1.5205 2.3533 -0.4173 6 7 0.3953 2.2866 -1.0929 7 14 2.2728 4.0158 -0.0178 8 1 1.6677 4.5460 1.2304 9 1 2.0107 4.9590 -1.1344 10 1 3.7383 3.8641 0.1682 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1672 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3796 -3.6352 -0.0005 15 1 3.0724 -3.5266 0.8339 16 6 1.6220 -4.9640 0.1254 17 8 2.5788 -6.0289 0.1090 18 6 3.5459 -5.9681 -0.8468 19 6 4.2734 -7.1087 -1.1529 20 6 5.2604 -7.0619 -2.1190 21 6 5.5259 -5.8784 -2.7825 22 6 4.8041 -4.7386 -2.4832 23 6 3.8114 -4.7791 -1.5154 24 8 3.1065 -3.6492 -1.2339 25 1 -0.3633 0.0799 -1.0246 26 1 -0.3633 -0.9273 0.4431 27 1 -0.3633 0.8473 0.5814 28 1 -0.0443 3.1005 -1.3845 29 1 0.7591 -2.5302 0.8896 30 1 0.7584 -2.5299 -0.8903 31 1 1.0667 -4.9832 1.0631 32 1 0.9330 -5.0751 -0.7119 33 1 4.0680 -8.0344 -0.6359 34 1 5.8258 -7.9512 -2.3555 35 1 6.2990 -5.8445 -3.5359 36 1 5.0133 -3.8155 -3.0032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294541717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:33 Heat of formation + Delta-G solvation = -91.626958 kcal Electronic energy + Delta-G solvation = -21385.234764 eV Core-core repulsion = 18027.810085 eV Total energy + Delta-G solvation = -3357.424679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.26674 -40.36436 -38.63140 -38.18995 -36.65559 -34.09483 -33.40151 -31.60334 -30.23881 -28.72362 -27.77593 -26.24264 -24.68425 -23.66046 -21.71417 -20.80143 -19.70240 -18.90056 -18.50560 -17.79429 -17.74606 -16.68815 -16.30596 -16.13571 -15.94282 -15.79385 -15.46379 -15.33504 -14.82957 -14.71597 -14.28182 -13.87422 -13.71839 -13.30717 -13.12429 -12.91606 -12.80790 -12.69794 -12.61487 -12.28747 -12.16316 -12.09092 -11.88607 -11.36484 -11.03863 -10.36694 -9.70976 -9.61381 -9.03123 -8.35040 -5.97749 0.32219 0.36240 1.34699 1.38885 1.51443 1.99496 2.10319 2.24853 2.30339 2.77565 2.90781 3.07499 3.34378 3.65780 3.68353 3.83812 4.10371 4.16034 4.26139 4.36794 4.41368 4.43275 4.48562 4.62122 4.73245 4.74750 4.93892 5.04431 5.23629 5.25734 5.39505 5.44100 5.52152 5.76000 5.98628 6.07856 6.46783 6.49546 7.16670 7.47092 8.03454 8.66670 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.032095 B = 0.004137 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.195393 B = 6766.994101 C = 7323.829917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.466 5.466 3 C -0.347 4.347 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.895 5.895 7 Si 0.987 3.013 8 H -0.263 1.263 9 H -0.273 1.273 10 H -0.279 1.279 11 C 0.434 3.566 12 O -0.629 6.629 13 C -0.111 4.111 14 C 0.071 3.929 15 H 0.063 0.937 16 C 0.033 3.967 17 O -0.315 6.315 18 C 0.024 3.976 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.111 4.111 22 C -0.142 4.142 23 C 0.027 3.973 24 O -0.321 6.321 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.273 0.727 29 H 0.146 0.854 30 H 0.108 0.892 31 H 0.161 0.839 32 H 0.090 0.910 33 H 0.156 0.844 34 H 0.170 0.830 35 H 0.159 0.841 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 -17.365 0.158 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.185 5.185 3 C -0.475 4.475 4 H 0.085 0.915 5 C -0.203 4.203 6 N -0.533 5.533 7 Si 0.811 3.189 8 H -0.188 1.188 9 H -0.199 1.199 10 H -0.204 1.204 11 C 0.224 3.776 12 O -0.516 6.516 13 C -0.150 4.150 14 C 0.014 3.986 15 H 0.081 0.919 16 C -0.042 4.042 17 O -0.230 6.230 18 C -0.020 4.020 19 C -0.136 4.136 20 C -0.132 4.132 21 C -0.129 4.129 22 C -0.161 4.161 23 C -0.018 4.018 24 O -0.236 6.236 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.163 0.837 30 H 0.126 0.874 31 H 0.178 0.822 32 H 0.108 0.892 33 H 0.173 0.827 34 H 0.187 0.813 35 H 0.177 0.823 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.144 -17.169 0.111 17.170 hybrid contribution 0.205 1.639 0.049 1.653 sum 0.348 -15.530 0.160 15.534 Atomic orbital electron populations 1.21510 0.79010 1.00484 1.01440 1.43889 1.06923 1.04580 1.63089 1.19591 0.98097 0.85568 1.44254 0.91465 1.26023 0.97018 1.02653 0.94595 1.70085 1.18881 1.30141 1.34217 0.85021 0.78219 0.77196 0.78502 1.18769 1.19850 1.20383 1.20898 0.88005 0.86320 0.82359 1.90512 1.16328 1.87912 1.56894 1.21577 0.97399 0.89185 1.06873 1.22877 0.93838 0.96400 0.85499 0.91872 1.23891 0.89559 0.83212 1.07534 1.86228 1.38942 1.47294 1.50526 1.19258 0.94457 0.93866 0.94467 1.20820 0.97096 0.96112 0.99557 1.21339 0.97392 0.99208 0.95237 1.21279 0.99564 0.91287 1.00755 1.20750 0.95218 1.00877 0.99218 1.19487 0.96551 0.85494 1.00267 1.86445 1.61978 1.35492 1.39720 0.93579 0.90206 0.93159 0.91693 0.83664 0.87385 0.82182 0.89152 0.82666 0.81257 0.82301 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.07 8.57 127.77 1.10 6.16 16 2 N -0.47 -24.33 3.02 -658.87 -1.99 -26.32 16 3 C -0.35 -20.30 9.31 84.04 0.78 -19.52 16 4 H 0.07 4.26 7.39 -2.91 -0.02 4.24 16 5 C 0.00 -0.05 5.05 84.93 0.43 0.37 16 6 N -0.89 -47.94 10.71 21.66 0.23 -47.71 16 7 Si 0.99 43.31 29.58 68.60 2.03 45.33 16 8 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 9 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 C 0.43 21.64 7.52 87.66 0.66 22.30 16 12 O -0.63 -37.39 15.14 9.20 0.14 -37.25 16 13 C -0.11 -3.75 3.92 29.85 0.12 -3.63 16 14 C 0.07 2.43 2.55 30.75 0.08 2.50 16 15 H 0.06 2.44 7.94 -2.39 -0.02 2.43 16 16 C 0.03 0.80 6.56 72.14 0.47 1.27 16 17 O -0.32 -8.95 10.42 -82.51 -0.86 -9.81 16 18 C 0.02 0.74 6.49 22.56 0.15 0.89 16 19 C -0.12 -2.73 9.96 22.37 0.22 -2.50 16 20 C -0.11 -2.21 10.04 22.26 0.22 -1.98 16 21 C -0.11 -2.52 10.04 22.26 0.22 -2.30 16 22 C -0.14 -4.50 9.96 22.37 0.22 -4.28 16 23 C 0.03 0.97 6.49 22.56 0.15 1.12 16 24 O -0.32 -13.28 9.40 -72.25 -0.68 -13.96 16 25 H 0.05 2.09 7.45 -2.38 -0.02 2.07 16 26 H 0.08 2.51 6.28 -2.39 -0.01 2.49 16 27 H 0.05 2.27 7.19 -2.39 -0.02 2.26 16 28 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 29 H 0.15 3.54 7.41 -2.39 -0.02 3.52 16 30 H 0.11 3.35 8.11 -2.39 -0.02 3.33 16 31 H 0.16 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -78.16 304.64 4.78 -73.38 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 1.09 Total: 15.93 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 4.82 Total: 0.40 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.76 Total: -74.03 kcal Atomic # 8 Polarization: -59.61 SS G_CDS: -1.40 Total: -61.01 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -78.16 4.78 -73.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294541717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.245 kcal (2) G-P(sol) polarization free energy of solvation -78.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds