Wall clock time and date at job start Mon Mar 30 2020 02:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37092 * 120.00460 * 2 1 4 4 H 1.07999 * 120.00045 * 202.41270 * 3 2 1 5 5 C 1.38949 * 119.99770 * 22.41779 * 3 2 1 6 6 N 1.31411 * 120.00083 * 11.58391 * 5 3 2 7 7 Si 1.86804 * 119.99729 * 191.59149 * 5 3 2 8 8 H 1.48503 * 109.47446 * 89.99566 * 7 5 3 9 9 H 1.48502 * 109.47066 * 209.99615 * 7 5 3 10 10 H 1.48498 * 109.47087 * 329.99607 * 7 5 3 11 11 C 1.34786 * 119.99415 * 180.02562 * 2 1 3 12 12 O 1.21287 * 120.00015 * 179.97438 * 11 2 1 13 13 C 1.50694 * 120.00027 * 359.97438 * 11 2 1 14 14 C 1.53002 * 109.47275 * 180.02562 * 13 11 2 15 15 H 1.09006 * 109.69946 * 304.41972 * 14 13 11 16 16 C 1.53465 * 109.74345 * 183.81601 * 14 13 11 17 17 O 1.43182 * 108.23388 * 180.54903 * 16 14 13 18 18 C 1.36109 * 116.69575 * 46.25587 * 17 16 14 19 19 C 1.38706 * 119.39605 * 163.02574 * 18 17 16 20 20 C 1.38192 * 120.06409 * 180.09359 * 19 18 17 21 21 C 1.38252 * 120.11688 * 359.47829 * 20 19 18 22 22 C 1.38201 * 120.10844 * 0.33591 * 21 20 19 23 23 C 1.38698 * 120.06961 * 359.96790 * 22 21 20 24 24 O 1.36108 * 119.39816 * 179.78011 * 23 22 21 25 25 H 1.09005 * 109.46786 * 272.15659 * 1 2 3 26 26 H 1.09005 * 109.46983 * 32.14775 * 1 2 3 27 27 H 1.08993 * 109.47735 * 152.15455 * 1 2 3 28 28 H 0.97002 * 119.99579 * 180.02562 * 6 5 3 29 29 H 1.09001 * 109.47451 * 60.00260 * 13 11 2 30 30 H 1.09001 * 109.47185 * 299.99924 * 13 11 2 31 31 H 1.08998 * 109.71193 * 300.23203 * 16 14 13 32 32 H 1.08999 * 109.71117 * 60.86960 * 16 14 13 33 33 H 1.07999 * 119.96614 * 359.81037 * 19 18 17 34 34 H 1.07997 * 119.94548 * 179.76174 * 20 19 18 35 35 H 1.07995 * 119.95001 * 180.31558 * 21 20 19 36 36 H 1.08003 * 119.96440 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.1694 1.2225 -0.3566 5 6 1.5346 2.3451 0.4589 6 7 0.3898 2.2706 1.0997 7 14 2.3339 4.0076 0.1647 8 1 1.8585 4.5638 -1.1276 9 1 1.9692 4.9341 1.2665 10 1 3.8095 3.8467 0.1213 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1675 -0.0010 13 6 1.3852 -2.4723 -0.0005 14 6 2.3793 -3.6354 -0.0005 15 1 3.0590 -3.5378 -0.8471 16 6 1.6206 -4.9659 -0.0967 17 8 2.5785 -6.0300 -0.0811 18 6 3.5588 -5.9566 0.8602 19 6 4.2928 -7.0924 1.1688 20 6 5.2900 -7.0340 2.1237 21 6 5.5661 -5.8414 2.7664 22 6 4.8410 -4.7052 2.4609 23 6 3.8346 -4.7584 1.5080 24 8 3.1261 -3.6322 1.2210 25 1 -0.3633 0.0387 1.0270 26 1 -0.3633 0.8701 -0.5469 27 1 -0.3634 -0.9086 -0.4800 28 1 -0.0403 3.0790 1.4198 29 1 0.7582 -2.5299 -0.8903 30 1 0.7589 -2.5302 0.8897 31 1 0.9456 -5.0664 0.7533 32 1 1.0507 -4.9978 -1.0253 33 1 4.0817 -8.0243 0.6655 34 1 5.8577 -7.9204 2.3652 35 1 6.3494 -5.7977 3.5085 36 1 5.0584 -3.7749 2.9646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294541721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:36 Heat of formation + Delta-G solvation = -70.254554 kcal Electronic energy + Delta-G solvation = -21394.132422 eV Core-core repulsion = 18037.634520 eV Total energy + Delta-G solvation = -3356.497902 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.10744 -38.57426 -37.50646 -36.95586 -34.67895 -32.60209 -31.51294 -30.55153 -29.03979 -27.25195 -26.08859 -24.50501 -23.32251 -22.55697 -20.53252 -19.16925 -18.39021 -17.38298 -16.86423 -16.60108 -16.02297 -15.08050 -15.03070 -14.87181 -14.37405 -14.26090 -14.05900 -13.86658 -13.72341 -13.51142 -12.77250 -12.22243 -12.18631 -11.81027 -11.67373 -11.50310 -11.21746 -11.19795 -11.07273 -10.90245 -10.64101 -10.36204 -10.24572 -10.17219 -9.02475 -8.54187 -8.40121 -7.90342 -7.67996 -6.30626 -3.87155 1.38098 1.43169 3.15949 3.16920 3.25382 3.31220 3.39367 3.83275 3.90902 4.09312 4.30715 4.68075 4.88673 4.94101 5.04088 5.11691 5.13109 5.23054 5.34200 5.47520 5.52641 5.59069 5.75978 5.91461 5.95512 6.12499 6.22576 6.29643 6.35440 6.53107 6.72710 6.85433 7.10384 7.20684 7.57424 7.65922 8.12792 8.49042 9.19756 9.42611 9.98267 10.73280 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031504 B = 0.004173 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.558842 B = 6708.587039 C = 7295.712282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.449 5.449 3 C -0.304 4.304 4 H 0.098 0.902 5 C 0.030 3.970 6 N -0.885 5.885 7 Si 0.926 3.074 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.448 3.552 12 O -0.577 6.577 13 C -0.126 4.126 14 C 0.075 3.925 15 H 0.090 0.910 16 C 0.024 3.976 17 O -0.310 6.310 18 C 0.040 3.960 19 C -0.117 4.117 20 C -0.128 4.128 21 C -0.117 4.117 22 C -0.116 4.116 23 C 0.067 3.933 24 O -0.281 6.281 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.025 0.975 28 H 0.267 0.733 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.715 -15.242 0.057 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.169 5.169 3 C -0.432 4.432 4 H 0.116 0.884 5 C -0.173 4.173 6 N -0.525 5.525 7 Si 0.753 3.247 8 H -0.204 1.204 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.236 3.764 12 O -0.461 6.461 13 C -0.166 4.166 14 C 0.018 3.982 15 H 0.108 0.892 16 C -0.051 4.051 17 O -0.224 6.224 18 C -0.005 4.005 19 C -0.135 4.135 20 C -0.147 4.147 21 C -0.135 4.135 22 C -0.135 4.135 23 C 0.021 3.979 24 O -0.194 6.194 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.107 -15.032 0.104 15.073 hybrid contribution -0.108 1.054 -0.112 1.065 sum 0.999 -13.978 -0.008 14.014 Atomic orbital electron populations 1.21511 0.81211 0.98687 1.01739 1.43578 1.05456 1.04738 1.63080 1.19662 0.99483 0.83782 1.40304 0.88387 1.25330 0.96549 1.00047 0.95390 1.69996 1.17446 1.29208 1.35838 0.85917 0.79691 0.81247 0.77810 1.20412 1.20944 1.19374 1.19734 0.88075 0.84486 0.84139 1.90552 1.13702 1.86820 1.55055 1.21597 0.97583 0.93247 1.04161 1.22844 0.93772 0.94313 0.87260 0.89202 1.23743 0.90311 0.86184 1.04889 1.86258 1.37841 1.46644 1.51677 1.18965 0.93276 0.93583 0.94630 1.20362 0.97486 0.96196 0.99481 1.20818 0.98398 0.98235 0.97212 1.20887 0.99931 0.92087 1.00604 1.20542 0.94124 0.99956 0.98878 1.19112 0.95034 0.85238 0.98547 1.86523 1.59875 1.33403 1.39626 0.92386 0.91238 0.95675 0.92307 0.88114 0.88980 0.90525 0.86051 0.85239 0.85486 0.85377 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.45 8.52 59.85 0.51 2.96 16 2 N -0.45 -11.48 3.02 -122.19 -0.37 -11.84 16 3 C -0.30 -8.55 9.29 -14.94 -0.14 -8.69 16 4 H 0.10 2.89 7.41 -52.49 -0.39 2.51 16 5 C 0.03 0.79 5.11 -17.47 -0.09 0.70 16 6 N -0.89 -23.64 10.62 55.50 0.59 -23.05 16 7 Si 0.93 20.92 29.57 -169.99 -5.03 15.89 16 8 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 C 0.45 10.85 7.51 -10.98 -0.08 10.77 16 12 O -0.58 -16.17 15.13 -8.63 -0.13 -16.30 16 13 C -0.13 -2.19 3.96 -27.89 -0.11 -2.30 16 14 C 0.08 1.28 2.55 -26.49 -0.07 1.21 16 15 H 0.09 1.65 7.98 -51.93 -0.41 1.24 16 16 C 0.02 0.32 6.56 37.40 0.25 0.56 16 17 O -0.31 -4.63 10.42 -32.87 -0.34 -4.97 16 18 C 0.04 0.63 6.49 -39.14 -0.25 0.38 16 19 C -0.12 -1.50 9.96 -39.43 -0.39 -1.90 16 20 C -0.13 -1.46 10.04 -39.59 -0.40 -1.86 16 21 C -0.12 -1.43 10.04 -39.59 -0.40 -1.83 16 22 C -0.12 -1.79 9.96 -39.42 -0.39 -2.18 16 23 C 0.07 1.16 6.49 -39.14 -0.25 0.90 16 24 O -0.28 -5.55 9.32 -44.38 -0.41 -5.96 16 25 H 0.06 1.32 7.54 -51.93 -0.39 0.93 16 26 H 0.07 1.60 7.06 -51.93 -0.37 1.23 16 27 H 0.02 0.43 6.36 -51.93 -0.33 0.10 16 28 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.10 1.40 7.40 -51.93 -0.38 1.02 16 30 H 0.09 1.51 8.11 -51.93 -0.42 1.09 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 304.58 15.07 4.59 4.59 Total: -1.00 -33.22 304.58 -7.29 -40.51 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.37 Total: 2.41 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.82 Total: -1.28 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.22 Total: -34.90 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.89 Total: -27.23 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.22 -7.29 -40.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294541721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.744 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds