Wall clock time and date at job start Mon Mar 30 2020 02:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37092 * 120.00460 * 2 1 4 4 H 1.07999 * 120.00045 * 202.41270 * 3 2 1 5 5 C 1.38949 * 119.99770 * 22.41779 * 3 2 1 6 6 N 1.31411 * 120.00083 * 11.58391 * 5 3 2 7 7 Si 1.86804 * 119.99729 * 191.59149 * 5 3 2 8 8 H 1.48503 * 109.47446 * 89.99566 * 7 5 3 9 9 H 1.48502 * 109.47066 * 209.99615 * 7 5 3 10 10 H 1.48498 * 109.47087 * 329.99607 * 7 5 3 11 11 C 1.34786 * 119.99415 * 180.02562 * 2 1 3 12 12 O 1.21287 * 120.00015 * 179.97438 * 11 2 1 13 13 C 1.50694 * 120.00027 * 359.97438 * 11 2 1 14 14 C 1.53002 * 109.47275 * 180.02562 * 13 11 2 15 15 H 1.09006 * 109.69946 * 304.41972 * 14 13 11 16 16 C 1.53465 * 109.74345 * 183.81601 * 14 13 11 17 17 O 1.43182 * 108.23388 * 180.54903 * 16 14 13 18 18 C 1.36109 * 116.69575 * 46.25587 * 17 16 14 19 19 C 1.38706 * 119.39605 * 163.02574 * 18 17 16 20 20 C 1.38192 * 120.06409 * 180.09359 * 19 18 17 21 21 C 1.38252 * 120.11688 * 359.47829 * 20 19 18 22 22 C 1.38201 * 120.10844 * 0.33591 * 21 20 19 23 23 C 1.38698 * 120.06961 * 359.96790 * 22 21 20 24 24 O 1.36108 * 119.39816 * 179.78011 * 23 22 21 25 25 H 1.09005 * 109.46786 * 272.15659 * 1 2 3 26 26 H 1.09005 * 109.46983 * 32.14775 * 1 2 3 27 27 H 1.08993 * 109.47735 * 152.15455 * 1 2 3 28 28 H 0.97002 * 119.99579 * 180.02562 * 6 5 3 29 29 H 1.09001 * 109.47451 * 60.00260 * 13 11 2 30 30 H 1.09001 * 109.47185 * 299.99924 * 13 11 2 31 31 H 1.08998 * 109.71193 * 300.23203 * 16 14 13 32 32 H 1.08999 * 109.71117 * 60.86960 * 16 14 13 33 33 H 1.07999 * 119.96614 * 359.81037 * 19 18 17 34 34 H 1.07997 * 119.94548 * 179.76174 * 20 19 18 35 35 H 1.07995 * 119.95001 * 180.31558 * 21 20 19 36 36 H 1.08003 * 119.96440 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.1694 1.2225 -0.3566 5 6 1.5346 2.3451 0.4589 6 7 0.3898 2.2706 1.0997 7 14 2.3339 4.0076 0.1647 8 1 1.8585 4.5638 -1.1276 9 1 1.9692 4.9341 1.2665 10 1 3.8095 3.8467 0.1213 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1675 -0.0010 13 6 1.3852 -2.4723 -0.0005 14 6 2.3793 -3.6354 -0.0005 15 1 3.0590 -3.5378 -0.8471 16 6 1.6206 -4.9659 -0.0967 17 8 2.5785 -6.0300 -0.0811 18 6 3.5588 -5.9566 0.8602 19 6 4.2928 -7.0924 1.1688 20 6 5.2900 -7.0340 2.1237 21 6 5.5661 -5.8414 2.7664 22 6 4.8410 -4.7052 2.4609 23 6 3.8346 -4.7584 1.5080 24 8 3.1261 -3.6322 1.2210 25 1 -0.3633 0.0387 1.0270 26 1 -0.3633 0.8701 -0.5469 27 1 -0.3634 -0.9086 -0.4800 28 1 -0.0403 3.0790 1.4198 29 1 0.7582 -2.5299 -0.8903 30 1 0.7589 -2.5302 0.8897 31 1 0.9456 -5.0664 0.7533 32 1 1.0507 -4.9978 -1.0253 33 1 4.0817 -8.0243 0.6655 34 1 5.8577 -7.9204 2.3652 35 1 6.3494 -5.7977 3.5085 36 1 5.0584 -3.7749 2.9646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294541721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:35 Heat of formation + Delta-G solvation = -91.600608 kcal Electronic energy + Delta-G solvation = -21395.058057 eV Core-core repulsion = 18037.634520 eV Total energy + Delta-G solvation = -3357.423537 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.26587 -40.36153 -38.63066 -38.18796 -36.65263 -34.09007 -33.39232 -31.60242 -30.23623 -28.72146 -27.77575 -26.23031 -24.68095 -23.65934 -21.71541 -20.80503 -19.70032 -18.89585 -18.50411 -17.79298 -17.74364 -16.69120 -16.29778 -16.13498 -15.93862 -15.78637 -15.46476 -15.33441 -14.82909 -14.71517 -14.27472 -13.85924 -13.71502 -13.32513 -13.08766 -12.91568 -12.80054 -12.70156 -12.62234 -12.29145 -12.16633 -12.09329 -11.88875 -11.36405 -11.02450 -10.36593 -9.69468 -9.61313 -9.02951 -8.33850 -5.99321 0.32223 0.36369 1.35412 1.38636 1.50875 2.00068 2.10543 2.24941 2.30397 2.77582 2.90796 3.08613 3.34532 3.65912 3.68561 3.83608 4.10673 4.16202 4.26349 4.36899 4.41374 4.43343 4.48776 4.62338 4.73464 4.75432 4.93918 5.06262 5.23655 5.25833 5.40975 5.43242 5.52180 5.76014 5.98908 6.08855 6.47336 6.50042 7.16907 7.47210 8.03597 8.67662 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031504 B = 0.004173 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.558842 B = 6708.587039 C = 7295.712282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.467 5.467 3 C -0.345 4.345 4 H 0.067 0.933 5 C -0.002 4.002 6 N -0.897 5.897 7 Si 0.988 3.012 8 H -0.263 1.263 9 H -0.272 1.272 10 H -0.279 1.279 11 C 0.436 3.564 12 O -0.628 6.628 13 C -0.111 4.111 14 C 0.071 3.929 15 H 0.063 0.937 16 C 0.033 3.967 17 O -0.315 6.315 18 C 0.024 3.976 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.111 4.111 22 C -0.142 4.142 23 C 0.027 3.973 24 O -0.321 6.321 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.273 0.727 29 H 0.146 0.854 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.170 0.830 35 H 0.159 0.841 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.068 -17.305 -0.056 17.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.186 5.186 3 C -0.473 4.473 4 H 0.085 0.915 5 C -0.204 4.204 6 N -0.536 5.536 7 Si 0.812 3.188 8 H -0.188 1.188 9 H -0.197 1.197 10 H -0.205 1.205 11 C 0.225 3.775 12 O -0.515 6.515 13 C -0.151 4.151 14 C 0.014 3.986 15 H 0.081 0.919 16 C -0.042 4.042 17 O -0.230 6.230 18 C -0.021 4.021 19 C -0.136 4.136 20 C -0.132 4.132 21 C -0.129 4.129 22 C -0.161 4.161 23 C -0.018 4.018 24 O -0.236 6.236 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.163 0.837 30 H 0.126 0.874 31 H 0.108 0.892 32 H 0.179 0.821 33 H 0.173 0.827 34 H 0.187 0.813 35 H 0.177 0.823 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.283 -17.109 -0.007 17.112 hybrid contribution 0.215 1.633 -0.021 1.647 sum 0.498 -15.476 -0.028 15.484 Atomic orbital electron populations 1.21496 0.79021 1.00559 1.01192 1.43874 1.06928 1.04546 1.63255 1.19587 0.99121 0.86014 1.42567 0.91505 1.26050 0.97043 1.02742 0.94533 1.70069 1.17873 1.30324 1.35343 0.85017 0.78090 0.77171 0.78555 1.18797 1.19737 1.20453 1.20909 0.88008 0.86326 0.82216 1.90512 1.16314 1.87919 1.56759 1.21580 0.97397 0.89204 1.06871 1.22878 0.93517 0.96410 0.85814 0.91850 1.23890 0.89557 0.83237 1.07502 1.86233 1.38075 1.46971 1.51704 1.19261 0.94139 0.93780 0.94897 1.20819 0.96974 0.96239 0.99537 1.21337 0.97351 0.99108 0.95393 1.21277 0.99589 0.91273 1.00736 1.20747 0.95059 1.00894 0.99385 1.19486 0.96387 0.85500 1.00400 1.86447 1.61109 1.35348 1.40677 0.93780 0.92912 0.90442 0.91732 0.83675 0.87408 0.89196 0.82148 0.82659 0.81258 0.82310 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.16 8.52 127.77 1.09 6.25 16 2 N -0.47 -24.41 3.02 -658.89 -1.99 -26.40 16 3 C -0.34 -20.16 9.29 84.04 0.78 -19.38 16 4 H 0.07 4.22 7.41 -2.91 -0.02 4.20 16 5 C 0.00 -0.12 5.11 84.93 0.43 0.32 16 6 N -0.90 -48.12 10.62 21.66 0.23 -47.89 16 7 Si 0.99 43.44 29.57 68.60 2.03 45.47 16 8 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 9 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 C 0.44 21.71 7.51 87.65 0.66 22.37 16 12 O -0.63 -37.28 15.13 10.51 0.16 -37.12 16 13 C -0.11 -3.76 3.96 29.85 0.12 -3.64 16 14 C 0.07 2.42 2.55 30.75 0.08 2.50 16 15 H 0.06 2.44 7.98 -2.38 -0.02 2.42 16 16 C 0.03 0.80 6.56 72.14 0.47 1.27 16 17 O -0.32 -8.94 10.42 -82.57 -0.86 -9.80 16 18 C 0.02 0.73 6.49 22.56 0.15 0.88 16 19 C -0.12 -2.73 9.96 22.37 0.22 -2.50 16 20 C -0.11 -2.22 10.04 22.26 0.22 -1.99 16 21 C -0.11 -2.53 10.04 22.26 0.22 -2.30 16 22 C -0.14 -4.52 9.96 22.37 0.22 -4.30 16 23 C 0.03 0.98 6.49 22.56 0.15 1.13 16 24 O -0.32 -13.29 9.32 -71.55 -0.67 -13.96 16 25 H 0.04 1.99 7.54 -2.38 -0.02 1.98 16 26 H 0.05 2.41 7.06 -2.38 -0.02 2.39 16 27 H 0.08 2.45 6.36 -2.39 -0.02 2.44 16 28 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 29 H 0.15 3.55 7.40 -2.39 -0.02 3.53 16 30 H 0.11 3.35 8.11 -2.39 -0.02 3.33 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.16 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 34 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 35 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -78.06 304.58 4.81 -73.25 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 1.09 Total: 15.86 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 4.82 Total: 0.59 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -1.76 Total: -74.29 kcal Atomic # 8 Polarization: -59.52 SS G_CDS: -1.37 Total: -60.89 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -78.06 4.81 -73.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294541721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.348 kcal (2) G-P(sol) polarization free energy of solvation -78.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds