Wall clock time and date at job start Mon Mar 30 2020 02:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34222 * 117.00209 * 2 1 4 4 O 1.20831 * 120.00116 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00241 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.47385 * 180.02562 * 5 3 2 7 7 C 1.46495 * 120.00275 * 270.00355 * 6 5 3 8 8 C 1.34778 * 119.99479 * 89.99953 * 6 5 3 9 9 O 1.21544 * 120.00412 * 354.39999 * 8 6 5 10 10 C 1.47882 * 119.99559 * 174.39316 * 8 6 5 11 11 C 1.39918 * 120.02719 * 147.12316 * 10 8 6 12 12 C 1.38325 * 120.36494 * 180.02562 * 11 10 8 13 13 C 1.37752 * 120.41096 * 0.02562 * 12 11 10 14 14 C 1.40752 * 120.04021 * 359.97438 * 13 12 11 15 15 C 1.41434 * 120.17940 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99905 * 150.22069 * 15 14 13 17 17 C 1.39937 * 119.99988 * 330.22534 * 15 14 13 18 18 N 1.30829 * 119.99711 * 344.50903 * 17 15 14 19 19 Si 1.86804 * 119.99863 * 164.50989 * 17 15 14 20 20 H 1.48498 * 109.47165 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46732 * 120.00104 * 19 17 15 22 22 H 1.48500 * 109.46750 * 239.99746 * 19 17 15 23 23 C 1.38996 * 120.03012 * 327.14432 * 10 8 6 24 24 H 1.09004 * 109.47391 * 59.99293 * 1 2 3 25 25 H 1.08998 * 109.47532 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47301 * 299.99764 * 1 2 3 27 27 H 1.09006 * 109.47008 * 60.00739 * 5 3 2 28 28 H 1.08993 * 109.47381 * 300.00714 * 5 3 2 29 29 H 1.08994 * 109.47182 * 269.30695 * 7 6 5 30 30 H 1.09003 * 109.46888 * 29.30322 * 7 6 5 31 31 H 1.08998 * 109.47492 * 149.30342 * 7 6 5 32 32 H 1.08004 * 119.81994 * 359.97438 * 11 10 8 33 33 H 1.08002 * 119.79483 * 180.02562 * 12 11 10 34 34 H 1.07996 * 119.98056 * 179.97438 * 13 12 11 35 35 H 0.97002 * 119.99395 * 180.02562 * 18 17 15 36 36 H 1.08002 * 120.20092 * 359.70504 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1899 3.3825 -1.2673 8 6 4.1724 3.3255 1.1686 9 8 3.9024 2.7758 2.2184 10 6 4.7102 4.7031 1.1722 11 6 4.3056 5.6101 2.1578 12 6 4.8038 6.9005 2.1675 13 6 5.7034 7.3078 1.2071 14 6 6.1222 6.4096 0.2076 15 6 7.0461 6.8245 -0.7795 16 1 7.7211 6.1075 -1.2228 17 6 7.0856 8.1643 -1.1818 18 7 6.0943 8.9653 -0.8867 19 14 8.5539 8.8087 -2.1402 20 1 9.5329 7.7108 -2.3435 21 1 8.0993 9.3179 -3.4589 22 1 9.1968 9.9100 -1.3792 23 6 5.6177 5.0981 0.1963 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.9564 0.7806 -0.8893 28 1 3.9557 0.7808 0.8907 29 1 5.2299 3.2757 -1.5754 30 1 3.5392 2.9553 -2.0304 31 1 3.9553 4.4393 -1.1400 32 1 3.5998 5.3013 2.9147 33 1 4.4856 7.5929 2.9328 34 1 6.0877 8.3170 1.2210 35 1 6.1216 9.8939 -1.1659 36 1 5.9362 4.4001 -0.5638 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298656967.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:41 Heat of formation + Delta-G solvation = -88.876817 kcal Electronic energy + Delta-G solvation = -21115.634840 eV Core-core repulsion = 17758.329416 eV Total energy + Delta-G solvation = -3357.305424 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.58976 -39.38122 -37.16475 -36.43981 -35.13069 -33.67116 -30.75939 -29.94493 -28.86865 -27.22307 -26.09053 -25.29634 -22.48071 -21.12670 -20.73870 -19.20702 -17.76923 -17.44677 -16.78593 -16.53749 -15.88396 -15.70519 -15.14554 -14.84739 -14.58050 -13.78882 -13.55585 -13.41259 -13.09168 -12.84140 -12.70556 -12.33725 -12.15774 -12.07016 -11.75842 -11.69337 -11.24186 -11.04305 -10.84842 -10.72934 -10.55465 -10.52083 -10.27399 -9.55078 -9.27033 -9.18417 -8.56155 -7.62927 -7.50813 -6.81965 -4.46464 2.16428 2.25301 2.51853 2.71346 3.04800 3.09042 3.10514 3.36363 3.66702 3.89674 4.57216 4.79367 4.89217 5.00229 5.08303 5.23284 5.38132 5.40987 5.50407 5.55664 5.81334 6.15214 6.20132 6.32786 6.37974 6.59014 6.75281 6.87351 6.98074 7.13866 7.30420 7.54760 7.68527 7.77681 7.86734 7.91125 8.06523 8.48015 8.62413 8.77759 8.81021 10.15280 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.028799 B = 0.004174 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.020962 B = 6705.926273 C = 7182.495989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.440 3.560 4 O -0.492 6.492 5 C 0.128 3.872 6 N -0.605 5.605 7 C 0.081 3.919 8 C 0.575 3.425 9 O -0.550 6.550 10 C -0.116 4.116 11 C -0.172 4.172 12 C -0.115 4.115 13 C -0.131 4.131 14 C 0.103 3.897 15 C -0.468 4.468 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.800 5.800 19 Si 0.907 3.093 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.273 1.273 23 C -0.190 4.190 24 H 0.061 0.939 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.281 0.719 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.187 -11.343 -3.108 12.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.280 3.720 4 O -0.377 6.377 5 C 0.003 3.997 6 N -0.338 5.338 7 C -0.061 4.061 8 C 0.368 3.632 9 O -0.428 6.428 10 C -0.119 4.119 11 C -0.192 4.192 12 C -0.134 4.134 13 C -0.151 4.151 14 C 0.100 3.900 15 C -0.498 4.498 16 H 0.097 0.903 17 C -0.140 4.140 18 N -0.425 5.425 19 Si 0.732 3.268 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.198 1.198 23 C -0.210 4.210 24 H 0.079 0.921 25 H 0.117 0.883 26 H 0.080 0.920 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.135 0.865 35 H 0.091 0.909 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.646 -11.075 -2.602 12.288 hybrid contribution 0.199 0.519 -0.565 0.793 sum -4.446 -10.556 -3.166 11.884 Atomic orbital electron populations 1.23216 0.76649 1.03357 1.02537 1.86488 1.23278 1.33764 1.84540 1.24706 0.93102 0.81505 0.72706 1.90699 1.66786 1.36331 1.43890 1.20823 0.86666 0.85543 1.06688 1.47504 1.68160 1.10268 1.07909 1.22207 1.00835 0.99511 0.83514 1.19046 0.75444 0.86635 0.82101 1.90669 1.52048 1.68534 1.31532 1.19181 1.02097 0.91230 0.99360 1.20414 1.05085 0.93849 0.99863 1.20667 0.98849 0.94894 0.98979 1.21471 0.99322 1.00493 0.93812 1.17535 0.90717 0.90364 0.91351 1.19514 1.17063 0.93897 1.19365 0.90260 1.25856 0.96129 0.96740 0.95317 1.69799 1.28407 1.06612 1.37717 0.86273 0.81744 0.79473 0.79303 1.18433 1.20037 1.19787 1.21585 1.01607 0.98302 0.99497 0.92060 0.88253 0.91982 0.86263 0.85878 0.91588 0.92306 0.88745 0.88416 0.88546 0.86505 0.90864 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.57 10.56 -39.24 -0.41 -4.99 16 3 C 0.44 6.62 8.02 36.00 0.29 6.91 16 4 O -0.49 -9.27 16.18 -18.75 -0.30 -9.58 16 5 C 0.13 1.71 5.95 -5.19 -0.03 1.68 16 6 N -0.60 -10.30 2.36 -184.07 -0.43 -10.74 16 7 C 0.08 1.24 8.82 59.84 0.53 1.76 16 8 C 0.57 12.21 7.38 -12.31 -0.09 12.11 16 9 O -0.55 -12.81 16.40 5.33 0.09 -12.72 16 10 C -0.12 -2.64 5.23 -105.04 -0.55 -3.19 16 11 C -0.17 -4.02 9.61 -38.92 -0.37 -4.40 16 12 C -0.12 -2.67 10.01 -39.73 -0.40 -3.07 16 13 C -0.13 -3.27 8.65 -38.81 -0.34 -3.60 16 14 C 0.10 2.56 5.51 -106.87 -0.59 1.97 16 15 C -0.47 -11.61 9.04 -37.73 -0.34 -11.95 16 16 H 0.08 1.88 7.89 -52.49 -0.41 1.46 16 17 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 18 N -0.80 -19.83 11.18 55.55 0.62 -19.20 16 19 Si 0.91 17.84 29.59 -169.99 -5.03 12.81 16 20 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 C -0.19 -4.31 7.41 -38.44 -0.28 -4.59 16 24 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 25 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 27 H 0.12 1.07 8.07 -51.93 -0.42 0.66 16 28 H 0.12 1.61 7.50 -51.93 -0.39 1.22 16 29 H 0.07 0.90 6.65 -51.93 -0.35 0.56 16 30 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 31 H 0.09 1.70 6.08 -51.93 -0.32 1.39 16 32 H 0.10 2.22 7.96 -52.48 -0.42 1.81 16 33 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 34 H 0.12 2.98 6.46 -52.49 -0.34 2.64 16 35 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 36 H 0.11 2.23 5.12 -52.49 -0.27 1.96 16 LS Contribution 313.50 15.07 4.72 4.72 Total: -1.00 -31.12 313.50 -6.10 -37.22 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -4.15 Total: 5.66 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -1.20 Total: -3.19 kcal Atomic # 7 Polarization: -30.13 SS G_CDS: 0.19 Total: -29.94 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.63 Total: -27.28 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.12 -6.10 -37.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298656967.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.652 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds