Wall clock time and date at job start Mon Mar 30 2020 02:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34222 * 117.00209 * 2 1 4 4 O 1.20831 * 120.00116 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00241 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.47385 * 180.02562 * 5 3 2 7 7 C 1.46495 * 120.00275 * 270.00355 * 6 5 3 8 8 C 1.34778 * 119.99479 * 89.99953 * 6 5 3 9 9 O 1.21544 * 120.00412 * 354.39999 * 8 6 5 10 10 C 1.47882 * 119.99559 * 174.39316 * 8 6 5 11 11 C 1.39918 * 120.02719 * 147.12316 * 10 8 6 12 12 C 1.38325 * 120.36494 * 180.02562 * 11 10 8 13 13 C 1.37752 * 120.41096 * 0.02562 * 12 11 10 14 14 C 1.40752 * 120.04021 * 359.97438 * 13 12 11 15 15 C 1.41434 * 120.17940 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99905 * 150.22069 * 15 14 13 17 17 C 1.39937 * 119.99988 * 330.22534 * 15 14 13 18 18 N 1.30829 * 119.99711 * 344.50903 * 17 15 14 19 19 Si 1.86804 * 119.99863 * 164.50989 * 17 15 14 20 20 H 1.48498 * 109.47165 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46732 * 120.00104 * 19 17 15 22 22 H 1.48500 * 109.46750 * 239.99746 * 19 17 15 23 23 C 1.38996 * 120.03012 * 327.14432 * 10 8 6 24 24 H 1.09004 * 109.47391 * 59.99293 * 1 2 3 25 25 H 1.08998 * 109.47532 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47301 * 299.99764 * 1 2 3 27 27 H 1.09006 * 109.47008 * 60.00739 * 5 3 2 28 28 H 1.08993 * 109.47381 * 300.00714 * 5 3 2 29 29 H 1.08994 * 109.47182 * 269.30695 * 7 6 5 30 30 H 1.09003 * 109.46888 * 29.30322 * 7 6 5 31 31 H 1.08998 * 109.47492 * 149.30342 * 7 6 5 32 32 H 1.08004 * 119.81994 * 359.97438 * 11 10 8 33 33 H 1.08002 * 119.79483 * 180.02562 * 12 11 10 34 34 H 1.07996 * 119.98056 * 179.97438 * 13 12 11 35 35 H 0.97002 * 119.99395 * 180.02562 * 18 17 15 36 36 H 1.08002 * 120.20092 * 359.70504 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1899 3.3825 -1.2673 8 6 4.1724 3.3255 1.1686 9 8 3.9024 2.7758 2.2184 10 6 4.7102 4.7031 1.1722 11 6 4.3056 5.6101 2.1578 12 6 4.8038 6.9005 2.1675 13 6 5.7034 7.3078 1.2071 14 6 6.1222 6.4096 0.2076 15 6 7.0461 6.8245 -0.7795 16 1 7.7211 6.1075 -1.2228 17 6 7.0856 8.1643 -1.1818 18 7 6.0943 8.9653 -0.8867 19 14 8.5539 8.8087 -2.1402 20 1 9.5329 7.7108 -2.3435 21 1 8.0993 9.3179 -3.4589 22 1 9.1968 9.9100 -1.3792 23 6 5.6177 5.0981 0.1963 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.9564 0.7806 -0.8893 28 1 3.9557 0.7808 0.8907 29 1 5.2299 3.2757 -1.5754 30 1 3.5392 2.9553 -2.0304 31 1 3.9553 4.4393 -1.1400 32 1 3.5998 5.3013 2.9147 33 1 4.4856 7.5929 2.9328 34 1 6.0877 8.3170 1.2210 35 1 6.1216 9.8939 -1.1659 36 1 5.9362 4.4001 -0.5638 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298656967.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:41 Heat of formation + Delta-G solvation = -106.962359 kcal Electronic energy + Delta-G solvation = -21116.419088 eV Core-core repulsion = 17758.329416 eV Total energy + Delta-G solvation = -3358.089672 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.84067 -40.85398 -38.90297 -37.65138 -36.56378 -35.48416 -32.29341 -31.78747 -30.18824 -28.27386 -27.41875 -27.12081 -24.04326 -22.72974 -22.25466 -20.77413 -19.08294 -18.89772 -18.04477 -17.83158 -17.40242 -17.21849 -16.65272 -16.57244 -16.00858 -15.28646 -15.05223 -14.59319 -14.45319 -14.42164 -14.26477 -13.80478 -13.51656 -13.36766 -13.06747 -13.00118 -12.84362 -12.66601 -12.50562 -12.24329 -11.97345 -11.85126 -11.79430 -11.34403 -11.05600 -10.87857 -9.93880 -9.44557 -9.37549 -8.61204 -6.35175 0.41144 0.93577 1.09461 1.36097 1.44831 1.50854 1.59032 2.00529 2.12359 2.25454 2.77362 3.61083 3.67656 3.79075 4.13777 4.18574 4.27309 4.28924 4.31233 4.37876 4.52543 4.66145 4.68749 4.91528 4.99157 5.01800 5.14770 5.25184 5.30836 5.35140 5.53484 5.77700 5.94376 6.03838 6.17073 6.22337 6.61769 6.65071 6.92595 6.94098 7.04174 8.38270 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.028799 B = 0.004174 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.020962 B = 6705.926273 C = 7182.495989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.442 3.558 4 O -0.538 6.538 5 C 0.123 3.877 6 N -0.598 5.598 7 C 0.079 3.921 8 C 0.571 3.429 9 O -0.579 6.579 10 C -0.123 4.123 11 C -0.191 4.191 12 C -0.114 4.114 13 C -0.157 4.157 14 C 0.077 3.923 15 C -0.493 4.493 16 H 0.086 0.914 17 C 0.037 3.963 18 N -0.831 5.831 19 Si 0.981 3.019 20 H -0.254 1.254 21 H -0.269 1.269 22 H -0.271 1.271 23 C -0.182 4.182 24 H 0.062 0.938 25 H 0.138 0.862 26 H 0.050 0.950 27 H 0.174 0.826 28 H 0.129 0.871 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.287 0.713 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.557 -13.029 -4.790 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.285 3.715 4 O -0.427 6.427 5 C 0.000 4.000 6 N -0.329 5.329 7 C -0.062 4.062 8 C 0.363 3.637 9 O -0.460 6.460 10 C -0.126 4.126 11 C -0.211 4.211 12 C -0.132 4.132 13 C -0.176 4.176 14 C 0.075 3.925 15 C -0.522 4.522 16 H 0.104 0.896 17 C -0.177 4.177 18 N -0.457 5.457 19 Si 0.802 3.198 20 H -0.178 1.178 21 H -0.193 1.193 22 H -0.196 1.196 23 C -0.201 4.201 24 H 0.081 0.919 25 H 0.156 0.844 26 H 0.069 0.931 27 H 0.191 0.809 28 H 0.147 0.853 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.135 0.865 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.028 -12.808 -4.311 14.102 hybrid contribution -0.114 0.938 -0.054 0.947 sum -4.142 -11.870 -4.365 13.308 Atomic orbital electron populations 1.23527 0.75011 1.05794 1.02089 1.86481 1.24831 1.32243 1.83775 1.24978 0.93691 0.81451 0.71389 1.90694 1.67856 1.37876 1.46322 1.21265 0.85828 0.83407 1.09538 1.47473 1.66654 1.11730 1.07065 1.22280 1.02849 0.97760 0.83304 1.18821 0.75683 0.86154 0.83092 1.90644 1.53526 1.68998 1.32803 1.19485 1.01800 0.92424 0.98904 1.20585 1.05661 0.94294 1.00565 1.20853 0.98125 0.95274 0.98982 1.21442 1.00913 1.00228 0.95050 1.17899 0.91404 0.91451 0.91740 1.19796 1.17612 0.94983 1.19855 0.89586 1.26694 0.98480 0.96523 0.96022 1.69863 1.30091 1.07192 1.38600 0.85171 0.78043 0.78754 0.77836 1.17757 1.19346 1.19590 1.21790 1.00784 0.97872 0.99683 0.91897 0.84366 0.93144 0.80910 0.85346 0.89534 0.89143 0.92013 0.88354 0.86537 0.87858 0.90218 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.36 -8.12 10.56 -51.34 -0.54 -8.67 16 3 C 0.44 12.51 8.02 71.24 0.57 13.08 16 4 O -0.54 -19.98 16.18 21.95 0.36 -19.63 16 5 C 0.12 2.94 5.95 85.63 0.51 3.45 16 6 N -0.60 -19.28 2.36 -854.54 -2.02 -21.30 16 7 C 0.08 2.24 8.82 127.77 1.13 3.36 16 8 C 0.57 24.03 7.38 86.80 0.64 24.67 16 9 O -0.58 -27.00 16.40 -3.85 -0.06 -27.06 16 10 C -0.12 -5.67 5.23 -20.13 -0.11 -5.78 16 11 C -0.19 -9.13 9.61 22.70 0.22 -8.91 16 12 C -0.11 -5.41 10.01 22.18 0.22 -5.19 16 13 C -0.16 -8.02 8.65 22.77 0.20 -7.82 16 14 C 0.08 3.92 5.51 -21.32 -0.12 3.80 16 15 C -0.49 -24.46 9.04 23.47 0.21 -24.25 16 16 H 0.09 4.01 7.89 -2.91 -0.02 3.99 16 17 C 0.04 1.77 5.14 85.25 0.44 2.21 16 18 N -0.83 -41.70 11.18 21.82 0.24 -41.46 16 19 Si 0.98 36.01 29.59 68.60 2.03 38.04 16 20 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 21 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 22 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 23 C -0.18 -8.24 7.41 23.01 0.17 -8.07 16 24 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 25 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 27 H 0.17 2.26 8.07 -2.38 -0.02 2.24 16 28 H 0.13 3.03 7.50 -2.39 -0.02 3.01 16 29 H 0.09 2.10 6.65 -2.39 -0.02 2.08 16 30 H 0.09 1.99 8.07 -2.39 -0.02 1.97 16 31 H 0.06 2.19 6.08 -2.39 -0.01 2.17 16 32 H 0.10 4.60 7.96 -2.91 -0.02 4.58 16 33 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 34 H 0.10 5.47 6.46 -2.91 -0.02 5.46 16 35 H 0.29 13.10 8.30 -92.71 -0.77 12.33 16 36 H 0.13 5.26 5.12 -2.91 -0.01 5.25 16 Total: -1.00 -69.08 313.50 6.39 -62.69 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 1.10 Total: 25.12 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 5.28 Total: -7.74 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -1.77 Total: -62.76 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -0.25 Total: -55.36 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Total: -69.08 6.39 -62.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298656967.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.270 kcal (2) G-P(sol) polarization free energy of solvation -69.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds