Wall clock time and date at job start Mon Mar 30 2020 02:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34702 * 117.00118 * 2 1 4 4 O 1.21474 * 120.00127 * 0.02562 * 3 2 1 5 5 C 1.47740 * 120.00572 * 180.02562 * 3 2 1 6 6 C 1.39764 * 120.07589 * 359.97438 * 5 3 2 7 7 C 1.38041 * 120.13862 * 180.02562 * 6 5 3 8 8 C 1.38106 * 120.30013 * 359.73695 * 7 6 5 9 9 C 1.39664 * 120.15927 * 0.51437 * 8 7 6 10 10 C 1.47862 * 120.07427 * 179.76633 * 9 8 7 11 11 O 1.21552 * 120.00047 * 200.38023 * 10 9 8 12 12 N 1.34772 * 119.99872 * 20.37571 * 10 9 8 13 13 C 1.46499 * 120.00098 * 6.96487 * 12 10 9 14 14 C 1.46498 * 120.00143 * 186.96368 * 12 10 9 15 15 C 1.50697 * 109.47226 * 270.00381 * 14 12 10 16 16 H 1.07997 * 120.00298 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00210 * 179.97438 * 15 14 12 18 18 N 1.31518 * 119.99995 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00276 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47047 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47167 * 119.99799 * 19 17 15 22 22 H 1.48501 * 109.47555 * 239.99922 * 19 17 15 23 23 C 1.39329 * 119.85755 * 359.49284 * 9 8 7 24 24 H 1.08993 * 109.47507 * 60.00041 * 1 2 3 25 25 H 1.09003 * 109.46576 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46672 * 299.99225 * 1 2 3 27 27 H 1.08003 * 119.92754 * 0.04138 * 6 5 3 28 28 H 1.07998 * 119.84426 * 180.02562 * 7 6 5 29 29 H 1.08004 * 119.92117 * 180.26201 * 8 7 6 30 30 H 1.09006 * 109.46824 * 266.45161 * 13 12 10 31 31 H 1.08993 * 109.47330 * 26.44668 * 13 12 10 32 32 H 1.09001 * 109.47431 * 146.45455 * 13 12 10 33 33 H 1.09003 * 109.47494 * 149.99982 * 14 12 10 34 34 H 1.09006 * 109.47266 * 29.99856 * 14 12 10 35 35 H 0.97006 * 120.00082 * 180.02562 * 18 17 15 36 36 H 1.07993 * 120.15094 * 180.23329 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2776 -0.0006 6 6 4.3018 0.1065 -0.0006 7 6 5.6804 0.1774 -0.0006 8 6 6.3151 1.4040 -0.0060 9 6 5.5651 2.5821 -0.0008 10 6 6.2466 3.8943 -0.0014 11 8 5.6525 4.8879 0.3694 12 7 7.5264 3.9888 -0.4132 13 6 8.1940 2.8255 -1.0024 14 6 8.2499 5.2547 -0.2715 15 6 8.0537 6.0870 -1.5124 16 1 7.4508 5.7105 -2.3255 17 6 8.6440 7.3292 -1.6098 18 7 9.3779 7.7880 -0.6196 19 14 8.4014 8.3606 -3.1483 20 1 7.5395 7.6239 -4.1073 21 1 7.7514 9.6455 -2.7854 22 1 9.7200 8.6325 -3.7750 23 6 4.1732 2.5184 -0.0007 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3632 0.5137 0.8901 27 1 3.8116 -0.8558 -0.0008 28 1 6.2652 -0.7305 -0.0010 29 1 7.3940 1.4522 -0.0103 30 1 8.7333 2.2838 -0.2252 31 1 7.4498 2.1690 -1.4530 32 1 8.8959 3.1580 -1.7672 33 1 9.3122 5.0527 -0.1337 34 1 7.8679 5.7968 0.5936 35 1 9.7929 8.6621 -0.6879 36 1 3.5886 3.4264 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298796671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:06 Heat of formation + Delta-G solvation = -92.209754 kcal Electronic energy + Delta-G solvation = -20755.064014 eV Core-core repulsion = 17397.614063 eV Total energy + Delta-G solvation = -3357.449951 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.84079 -41.10619 -39.13334 -37.57074 -36.83868 -34.89542 -32.91207 -32.19590 -29.85642 -28.60831 -27.82077 -25.70326 -25.06601 -23.58766 -22.17920 -20.81729 -18.98421 -18.73486 -18.28162 -17.69789 -17.46201 -17.13029 -16.94896 -16.41799 -16.10095 -15.47541 -15.09398 -14.72680 -14.60382 -14.47143 -14.34681 -13.97885 -13.67005 -13.46582 -13.27876 -13.09987 -12.89147 -12.63611 -12.50163 -12.28899 -12.08122 -11.86910 -11.73680 -11.66447 -10.82186 -10.66914 -10.13561 -10.11699 -9.49483 -8.25370 -6.39591 -0.49196 -0.07441 1.30541 1.34104 1.37358 1.48640 1.53805 1.92556 2.23894 2.39995 2.76253 3.04431 3.47779 3.62768 3.81064 3.95844 4.09472 4.26197 4.30708 4.32323 4.36493 4.56694 4.61473 4.71655 4.83169 4.92827 4.96316 5.09914 5.14930 5.18568 5.25530 5.30130 5.51460 5.70966 5.79607 6.02550 6.57699 6.62170 6.69850 7.21547 7.36329 8.81967 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.026162 B = 0.003914 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.991282 B = 7152.779834 C = 7794.443877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.346 6.346 3 C 0.512 3.488 4 O -0.543 6.543 5 C -0.149 4.149 6 C -0.025 4.025 7 C -0.118 4.118 8 C -0.064 4.064 9 C -0.152 4.152 10 C 0.533 3.467 11 O -0.597 6.597 12 N -0.599 5.599 13 C 0.060 3.940 14 C 0.259 3.741 15 C -0.544 4.544 16 H 0.049 0.951 17 C 0.009 3.991 18 N -0.926 5.926 19 Si 0.967 3.033 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.264 1.264 23 C -0.023 4.023 24 H 0.060 0.940 25 H 0.143 0.857 26 H 0.059 0.941 27 H 0.178 0.822 28 H 0.192 0.808 29 H 0.182 0.818 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.037 0.963 34 H -0.003 1.003 35 H 0.268 0.732 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.549 -25.160 -0.330 26.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.262 6.262 3 C 0.358 3.642 4 O -0.435 6.435 5 C -0.151 4.151 6 C -0.043 4.043 7 C -0.136 4.136 8 C -0.081 4.081 9 C -0.156 4.156 10 C 0.323 3.677 11 O -0.479 6.479 12 N -0.329 5.329 13 C -0.081 4.081 14 C 0.138 3.862 15 C -0.583 4.583 16 H 0.067 0.933 17 C -0.190 4.190 18 N -0.566 5.566 19 Si 0.791 3.209 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.189 1.189 23 C -0.043 4.043 24 H 0.078 0.922 25 H 0.161 0.839 26 H 0.078 0.922 27 H 0.195 0.805 28 H 0.209 0.791 29 H 0.198 0.802 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.015 0.985 35 H 0.077 0.923 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.929 -24.225 -0.100 25.818 hybrid contribution -0.502 1.839 -0.481 1.966 sum -9.431 -22.386 -0.581 24.298 Atomic orbital electron populations 1.23637 0.74139 1.06229 1.02485 1.86501 1.25256 1.30642 1.83772 1.21345 0.89328 0.81696 0.71810 1.90857 1.67597 1.37571 1.47483 1.18986 0.89151 0.94809 1.12123 1.22069 0.94529 0.97618 0.90044 1.21704 0.93968 0.98568 0.99328 1.22949 1.03449 0.90708 0.91013 1.19778 0.93512 0.93480 1.08783 1.18953 0.81994 0.88824 0.77967 1.90726 1.65775 1.40234 1.51177 1.48042 1.11756 1.14097 1.59006 1.22683 0.98720 0.87460 0.99204 1.18842 0.91151 0.80521 0.95664 1.21712 1.31017 1.02877 1.02683 0.93251 1.25830 0.94586 0.98572 1.00040 1.70042 1.33602 1.19715 1.33252 0.85381 0.78442 0.78119 0.78936 1.19501 1.20860 1.18890 1.21128 0.93565 0.97382 0.92214 0.92153 0.83883 0.92167 0.80500 0.79094 0.80161 0.88720 0.88127 0.91115 0.94517 0.98495 0.92291 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.35 -6.65 9.81 -56.12 -0.55 -7.20 16 3 C 0.51 13.83 7.90 70.33 0.56 14.39 16 4 O -0.54 -19.06 16.13 19.92 0.32 -18.74 16 5 C -0.15 -3.84 5.87 -20.13 -0.12 -3.95 16 6 C -0.02 -0.38 9.61 22.59 0.22 -0.17 16 7 C -0.12 -1.51 10.02 22.19 0.22 -1.29 16 8 C -0.06 -1.30 7.61 22.58 0.17 -1.13 16 9 C -0.15 -5.05 5.56 -20.12 -0.11 -5.16 16 10 C 0.53 24.25 7.51 86.79 0.65 24.91 16 11 O -0.60 -34.19 16.18 -3.88 -0.06 -34.25 16 12 N -0.60 -25.93 2.86 -854.56 -2.44 -28.37 16 13 C 0.06 1.67 8.65 127.77 1.10 2.77 16 14 C 0.26 14.16 5.13 85.63 0.44 14.60 16 15 C -0.54 -32.23 9.39 25.60 0.24 -31.99 16 16 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 17 C 0.01 0.52 5.46 84.65 0.46 0.98 16 18 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 19 Si 0.97 46.02 29.54 68.60 2.03 48.05 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 23 C -0.02 -0.79 9.13 22.80 0.21 -0.59 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 25 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.18 1.50 7.60 -2.91 -0.02 1.47 16 28 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 29 H 0.18 2.88 4.02 -2.91 -0.01 2.86 16 30 H 0.09 1.87 6.99 -2.38 -0.02 1.85 16 31 H 0.10 2.20 5.26 -2.39 -0.01 2.19 16 32 H 0.07 2.06 8.10 -2.39 -0.02 2.04 16 33 H 0.04 1.96 8.07 -2.39 -0.02 1.95 16 34 H 0.00 -0.20 7.53 -2.38 -0.02 -0.21 16 35 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 36 H 0.11 4.43 7.37 -2.91 -0.02 4.41 16 Total: -1.00 -86.38 315.04 5.92 -80.46 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: 1.10 Total: 1.36 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 5.24 Total: 14.96 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -2.16 Total: -84.63 kcal Atomic # 8 Polarization: -59.90 SS G_CDS: -0.29 Total: -60.19 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -86.38 5.92 -80.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298796671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.753 kcal (2) G-P(sol) polarization free energy of solvation -86.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds