Wall clock time and date at job start Mon Mar 30 2020 02:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35990 * 116.99662 * 2 1 4 4 C 1.38979 * 119.90545 * 0.02562 * 3 2 1 5 5 C 1.38053 * 120.34831 * 179.97438 * 4 3 2 6 6 C 1.38661 * 120.15029 * 359.76484 * 5 4 3 7 7 O 1.35733 * 120.09254 * 180.25440 * 6 5 4 8 8 C 1.40152 * 119.80592 * 0.48940 * 6 5 4 9 9 C 1.47433 * 120.17154 * 179.76209 * 8 6 5 10 10 O 1.21627 * 119.99974 * 315.06713 * 9 8 6 11 11 N 1.34780 * 119.99958 * 135.33974 * 9 8 6 12 12 C 1.36900 * 119.99635 * 183.31504 * 11 9 8 13 13 H 1.07997 * 119.99727 * 138.12341 * 12 11 9 14 14 C 1.39018 * 119.99997 * 318.11314 * 12 11 9 15 15 N 1.31386 * 120.00465 * 340.20304 * 14 12 11 16 16 Si 1.86807 * 119.99977 * 160.19760 * 14 12 11 17 17 H 1.48498 * 109.46852 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47198 * 120.00273 * 16 14 12 19 19 H 1.48504 * 109.47292 * 240.00488 * 16 14 12 20 20 C 1.46501 * 119.99776 * 3.30907 * 11 9 8 21 21 C 1.52997 * 117.49390 * 183.80812 * 20 11 9 22 22 C 1.52997 * 117.49668 * 115.14932 * 20 11 9 23 23 C 1.38220 * 119.90339 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47514 * 300.00123 * 1 2 3 25 25 H 1.09002 * 109.47030 * 60.00699 * 1 2 3 26 26 H 1.08998 * 109.46808 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.82549 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.92595 * 180.02562 * 5 4 3 29 29 H 0.96699 * 114.00158 * 270.23113 * 7 6 5 30 30 H 0.96991 * 119.99779 * 185.03984 * 15 14 12 31 31 H 1.08998 * 115.55184 * 329.47829 * 20 11 9 32 32 H 1.08997 * 117.50441 * 359.97438 * 21 20 11 33 33 H 1.09005 * 117.50051 * 145.02626 * 21 20 11 34 34 H 1.09000 * 117.49868 * 214.97752 * 22 20 11 35 35 H 1.09006 * 117.49800 * 359.97438 * 22 20 11 36 36 H 1.08005 * 120.08048 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2873 2.3760 0.0005 5 6 1.9045 3.6109 0.0011 6 6 3.2884 3.6979 0.0060 7 8 3.8939 4.9126 0.0117 8 6 4.0599 2.5279 0.0001 9 6 5.5319 2.6110 -0.0001 10 8 6.0968 3.3934 -0.7404 11 7 6.2518 1.8161 0.8163 12 6 7.6143 1.9404 0.8658 13 1 8.1260 1.8993 1.8160 14 6 8.3390 2.1194 -0.3069 15 7 7.8097 1.7893 -1.4633 16 14 10.0656 2.8293 -0.2388 17 1 10.4275 3.1160 1.1725 18 1 11.0264 1.8497 -0.8066 19 1 10.1155 4.0862 -1.0282 20 6 5.5763 0.8192 1.6506 21 6 6.4384 0.0091 2.6209 22 6 5.8680 -0.6553 1.3653 23 6 3.4267 1.2818 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 0.2091 2.3143 0.0014 28 1 1.3081 4.5113 0.0019 29 1 4.0692 5.2689 -0.8700 30 1 8.3404 1.8451 -2.2731 31 1 4.5676 1.0799 1.9709 32 1 7.5081 0.2175 2.6382 33 1 5.9966 -0.2636 3.5793 34 1 5.0513 -1.3648 1.4983 35 1 6.5622 -0.8837 0.5566 36 1 4.0147 0.3759 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299438239.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:59 Heat of formation + Delta-G solvation = -34.518441 kcal Electronic energy + Delta-G solvation = -22082.828588 eV Core-core repulsion = 18727.880320 eV Total energy + Delta-G solvation = -3354.948268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.11847 -38.68495 -37.66871 -35.82155 -35.33294 -32.76834 -31.39191 -30.43238 -28.95448 -26.95852 -25.18973 -23.11618 -22.06162 -21.55990 -20.96883 -19.66653 -17.83969 -17.72455 -16.28676 -16.07050 -15.93078 -15.63321 -14.98950 -14.85984 -14.13429 -14.09770 -13.66798 -13.48343 -13.02815 -12.65599 -12.41134 -12.34607 -12.14567 -11.78526 -11.20679 -11.04721 -10.96913 -10.83152 -10.64023 -10.38467 -10.23204 -10.06700 -9.80743 -9.69662 -8.75754 -8.59070 -8.07085 -7.71833 -6.99812 -6.12789 -3.84268 1.41803 1.64728 3.29996 3.39422 3.40783 3.42390 3.75666 4.26958 4.37611 4.71072 4.84882 4.86390 4.96163 5.11815 5.13014 5.17742 5.26909 5.42644 5.62590 5.68353 5.75016 5.86513 5.91446 6.03137 6.25170 6.33586 6.37259 6.48395 6.53546 6.78318 6.91586 6.93803 7.01841 7.55019 7.61022 8.21467 8.25453 9.01352 9.14781 9.63173 10.28005 10.94737 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.006643 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.764434 B = 4213.907368 C = 5034.596904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.106 3.894 4 C -0.195 4.195 5 C -0.117 4.117 6 C 0.104 3.896 7 O -0.486 6.486 8 C -0.079 4.079 9 C 0.513 3.487 10 O -0.520 6.520 11 N -0.413 5.413 12 C -0.345 4.345 13 H 0.084 0.916 14 C 0.071 3.929 15 N -0.818 5.818 16 Si 0.913 3.087 17 H -0.270 1.270 18 H -0.286 1.286 19 H -0.280 1.280 20 C 0.067 3.933 21 C -0.181 4.181 22 C -0.197 4.197 23 C -0.116 4.116 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.390 0.610 30 H 0.264 0.736 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.169 -2.628 3.124 13.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.062 3.938 4 C -0.215 4.215 5 C -0.136 4.136 6 C 0.058 3.942 7 O -0.296 6.296 8 C -0.083 4.083 9 C 0.301 3.699 10 O -0.397 6.397 11 N -0.132 5.132 12 C -0.471 4.471 13 H 0.102 0.898 14 C -0.141 4.141 15 N -0.451 5.451 16 Si 0.740 3.260 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.206 1.206 20 C -0.039 4.039 21 C -0.219 4.219 22 C -0.236 4.236 23 C -0.135 4.135 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.247 0.753 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.778 -2.396 3.131 13.372 hybrid contribution 0.459 0.342 -0.600 0.830 sum -12.319 -2.054 2.531 12.743 Atomic orbital electron populations 1.22989 0.79096 1.03501 1.01065 1.86104 1.20765 1.26963 1.89254 1.18871 0.92082 0.83983 0.98911 1.21014 0.99520 0.91836 1.09092 1.21051 0.93574 0.97500 1.01478 1.18325 0.89446 0.84734 1.01702 1.84709 1.80491 1.30815 1.33634 1.20853 0.96605 0.92050 0.98789 1.17386 0.83852 0.83326 0.85311 1.90625 1.70495 1.38951 1.39663 1.42673 1.05541 1.27721 1.37233 1.19030 0.80373 1.54284 0.93439 0.89843 1.25261 0.98646 0.95258 0.94924 1.69867 1.36567 1.40009 0.98680 0.86134 0.82302 0.79106 0.78443 1.19474 1.21220 1.20587 1.21879 0.96214 0.87325 0.98447 1.23132 1.01281 1.04442 0.93018 1.23287 1.03563 0.96402 1.00315 1.20806 0.91079 0.98466 1.03197 0.92912 0.92922 0.88589 0.85580 0.85378 0.75333 0.92558 0.87472 0.87663 0.89855 0.89858 0.88197 0.83808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.64 10.49 -19.71 -0.21 -4.84 16 3 C 0.11 1.74 6.68 -39.31 -0.26 1.48 16 4 C -0.20 -2.81 9.02 -39.37 -0.36 -3.16 16 5 C -0.12 -1.82 9.97 -39.49 -0.39 -2.21 16 6 C 0.10 2.02 6.69 -38.71 -0.26 1.76 16 7 O -0.49 -9.52 12.42 -31.90 -0.40 -9.91 16 8 C -0.08 -1.72 5.15 -104.86 -0.54 -2.26 16 9 C 0.51 13.65 6.42 -12.51 -0.08 13.57 16 10 O -0.52 -15.55 13.72 -7.74 -0.11 -15.66 16 11 N -0.41 -10.67 2.85 -108.94 -0.31 -10.98 16 12 C -0.34 -9.49 8.21 -15.00 -0.12 -9.62 16 13 H 0.08 2.22 6.85 -52.49 -0.36 1.86 16 14 C 0.07 1.99 4.33 -17.45 -0.08 1.92 16 15 N -0.82 -24.23 11.50 55.50 0.64 -23.59 16 16 Si 0.91 21.93 29.60 -169.99 -5.03 16.89 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 20 C 0.07 1.42 4.42 -67.93 -0.30 1.12 16 21 C -0.18 -3.36 9.81 -26.69 -0.26 -3.62 16 22 C -0.20 -3.75 9.46 -26.69 -0.25 -4.00 16 23 C -0.12 -2.26 7.53 -39.01 -0.29 -2.55 16 24 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 25 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 26 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.13 1.37 6.27 -52.49 -0.33 1.05 16 28 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.39 6.39 9.06 45.56 0.41 6.80 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.11 2.11 6.24 -51.93 -0.32 1.79 16 32 H 0.11 2.10 6.51 -51.93 -0.34 1.77 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.10 2.16 8.14 -51.93 -0.42 1.74 16 36 H 0.14 2.90 5.82 -52.48 -0.31 2.60 16 LS Contribution 304.40 15.07 4.59 4.59 Total: -1.00 -34.06 304.40 -6.32 -40.38 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -3.29 Total: 9.43 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.21 Total: -6.31 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.33 Total: -34.57 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.71 Total: -30.41 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.06 -6.32 -40.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299438239.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.861 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds