Wall clock time and date at job start Mon Mar 30 2020 02:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35990 * 116.99662 * 2 1 4 4 C 1.38979 * 119.90545 * 0.02562 * 3 2 1 5 5 C 1.38053 * 120.34831 * 179.97438 * 4 3 2 6 6 C 1.38661 * 120.15029 * 359.76484 * 5 4 3 7 7 O 1.35733 * 120.09254 * 180.25440 * 6 5 4 8 8 C 1.40152 * 119.80592 * 0.48940 * 6 5 4 9 9 C 1.47433 * 120.17154 * 179.76209 * 8 6 5 10 10 O 1.21627 * 119.99974 * 315.06713 * 9 8 6 11 11 N 1.34780 * 119.99958 * 135.33974 * 9 8 6 12 12 C 1.36900 * 119.99635 * 183.31504 * 11 9 8 13 13 H 1.07997 * 119.99727 * 138.12341 * 12 11 9 14 14 C 1.39018 * 119.99997 * 318.11314 * 12 11 9 15 15 N 1.31386 * 120.00465 * 340.20304 * 14 12 11 16 16 Si 1.86807 * 119.99977 * 160.19760 * 14 12 11 17 17 H 1.48498 * 109.46852 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47198 * 120.00273 * 16 14 12 19 19 H 1.48504 * 109.47292 * 240.00488 * 16 14 12 20 20 C 1.46501 * 119.99776 * 3.30907 * 11 9 8 21 21 C 1.52997 * 117.49390 * 183.80812 * 20 11 9 22 22 C 1.52997 * 117.49668 * 115.14932 * 20 11 9 23 23 C 1.38220 * 119.90339 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47514 * 300.00123 * 1 2 3 25 25 H 1.09002 * 109.47030 * 60.00699 * 1 2 3 26 26 H 1.08998 * 109.46808 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.82549 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.92595 * 180.02562 * 5 4 3 29 29 H 0.96699 * 114.00158 * 270.23113 * 7 6 5 30 30 H 0.96991 * 119.99779 * 185.03984 * 15 14 12 31 31 H 1.08998 * 115.55184 * 329.47829 * 20 11 9 32 32 H 1.08997 * 117.50441 * 359.97438 * 21 20 11 33 33 H 1.09005 * 117.50051 * 145.02626 * 21 20 11 34 34 H 1.09000 * 117.49868 * 214.97752 * 22 20 11 35 35 H 1.09006 * 117.49800 * 359.97438 * 22 20 11 36 36 H 1.08005 * 120.08048 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2873 2.3760 0.0005 5 6 1.9045 3.6109 0.0011 6 6 3.2884 3.6979 0.0060 7 8 3.8939 4.9126 0.0117 8 6 4.0599 2.5279 0.0001 9 6 5.5319 2.6110 -0.0001 10 8 6.0968 3.3934 -0.7404 11 7 6.2518 1.8161 0.8163 12 6 7.6143 1.9404 0.8658 13 1 8.1260 1.8993 1.8160 14 6 8.3390 2.1194 -0.3069 15 7 7.8097 1.7893 -1.4633 16 14 10.0656 2.8293 -0.2388 17 1 10.4275 3.1160 1.1725 18 1 11.0264 1.8497 -0.8066 19 1 10.1155 4.0862 -1.0282 20 6 5.5763 0.8192 1.6506 21 6 6.4384 0.0091 2.6209 22 6 5.8680 -0.6553 1.3653 23 6 3.4267 1.2818 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 0.2091 2.3143 0.0014 28 1 1.3081 4.5113 0.0019 29 1 4.0692 5.2689 -0.8700 30 1 8.3404 1.8451 -2.2731 31 1 4.5676 1.0799 1.9709 32 1 7.5081 0.2175 2.6382 33 1 5.9966 -0.2636 3.5793 34 1 5.0513 -1.3648 1.4983 35 1 6.5622 -0.8837 0.5566 36 1 4.0147 0.3759 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299438239.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:58 Heat of formation + Delta-G solvation = -59.099561 kcal Electronic energy + Delta-G solvation = -22083.894505 eV Core-core repulsion = 18727.880320 eV Total energy + Delta-G solvation = -3356.014185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.51861 -40.19764 -39.14477 -37.62340 -36.68871 -34.76762 -33.13589 -32.04311 -30.23833 -27.93587 -27.11034 -24.63214 -23.56686 -23.04136 -22.61156 -21.35507 -19.35380 -19.10166 -18.04189 -17.51103 -17.42217 -16.96075 -16.59424 -16.27234 -15.91522 -15.52890 -15.14684 -15.09741 -14.60834 -14.32849 -13.95936 -13.73712 -13.34279 -13.15913 -12.95112 -12.82323 -12.70405 -12.29814 -12.15931 -12.05551 -11.74219 -11.66126 -11.42220 -11.26674 -10.75303 -10.19603 -9.87531 -9.03351 -8.97774 -8.22719 -5.98439 0.02034 0.31699 1.35425 1.43311 1.51549 2.17701 2.35538 2.38238 2.72379 3.03864 3.09929 3.34328 3.40627 3.81240 3.87469 4.09322 4.15117 4.26513 4.35700 4.38375 4.50180 4.52341 4.58933 4.79202 4.85637 4.88903 5.00011 5.06995 5.22599 5.26545 5.41383 5.44886 5.50450 5.58681 6.17328 6.43888 6.84412 6.96885 7.15617 7.62962 8.30215 8.85641 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.006643 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.764434 B = 4213.907368 C = 5034.596904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.115 3.885 4 C -0.171 4.171 5 C -0.101 4.101 6 C 0.084 3.916 7 O -0.503 6.503 8 C -0.113 4.113 9 C 0.501 3.499 10 O -0.572 6.572 11 N -0.430 5.430 12 C -0.361 4.361 13 H 0.086 0.914 14 C 0.021 3.979 15 N -0.860 5.860 16 Si 0.974 3.026 17 H -0.256 1.256 18 H -0.272 1.272 19 H -0.294 1.294 20 C 0.045 3.955 21 C -0.163 4.163 22 C -0.183 4.183 23 C -0.129 4.129 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.119 0.881 27 H 0.175 0.825 28 H 0.166 0.834 29 H 0.398 0.602 30 H 0.260 0.740 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.367 -3.276 4.515 17.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.247 6.247 3 C 0.070 3.930 4 C -0.190 4.190 5 C -0.119 4.119 6 C 0.038 3.962 7 O -0.314 6.314 8 C -0.117 4.117 9 C 0.291 3.709 10 O -0.453 6.453 11 N -0.148 5.148 12 C -0.488 4.488 13 H 0.103 0.897 14 C -0.186 4.186 15 N -0.494 5.494 16 Si 0.799 3.201 17 H -0.180 1.180 18 H -0.197 1.197 19 H -0.220 1.220 20 C -0.060 4.060 21 C -0.201 4.201 22 C -0.222 4.222 23 C -0.148 4.148 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.137 0.863 27 H 0.192 0.808 28 H 0.183 0.817 29 H 0.256 0.744 30 H 0.069 0.931 31 H 0.139 0.861 32 H 0.105 0.895 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.084 0.916 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.995 -3.091 4.562 16.917 hybrid contribution 1.204 0.473 -0.993 1.631 sum -14.790 -2.618 3.569 15.438 Atomic orbital electron populations 1.23428 0.76036 1.05783 1.02685 1.86100 1.23829 1.25977 1.88757 1.18809 0.91056 0.85613 0.97560 1.21511 1.01690 0.90238 1.05555 1.21381 0.91711 0.99596 0.99246 1.18642 0.91016 0.83709 1.02855 1.84661 1.81031 1.31095 1.34629 1.20553 0.94008 0.94326 1.02824 1.18181 0.86093 0.82431 0.84208 1.90552 1.72298 1.40934 1.41550 1.42891 1.05347 1.28897 1.37680 1.19289 0.81749 1.54264 0.93464 0.89663 1.26108 1.02472 0.95427 0.94639 1.69990 1.38018 1.42229 0.99178 0.85202 0.78327 0.77806 0.78813 1.18005 1.19718 1.22038 1.22064 0.97154 0.87316 0.99490 1.23218 1.00124 1.02331 0.94379 1.23197 1.03729 0.95688 0.99595 1.20584 0.92807 0.96806 1.04614 0.90986 0.91365 0.86328 0.80773 0.81670 0.74437 0.93104 0.86088 0.89536 0.85712 0.86352 0.91647 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.32 16 2 O -0.33 -8.58 10.49 -93.44 -0.98 -9.56 16 3 C 0.11 3.45 6.68 22.44 0.15 3.60 16 4 C -0.17 -4.11 9.02 22.40 0.20 -3.91 16 5 C -0.10 -2.78 9.97 22.33 0.22 -2.56 16 6 C 0.08 3.22 6.69 22.84 0.15 3.37 16 7 O -0.50 -20.05 12.42 -78.13 -0.97 -21.02 16 8 C -0.11 -5.08 5.15 -20.02 -0.10 -5.18 16 9 C 0.50 28.06 6.42 86.66 0.56 28.61 16 10 O -0.57 -36.38 13.72 8.31 0.11 -36.26 16 11 N -0.43 -23.20 2.85 -616.82 -1.76 -24.96 16 12 C -0.36 -20.73 8.21 84.09 0.69 -20.04 16 13 H 0.09 4.70 6.85 -2.91 -0.02 4.68 16 14 C 0.02 1.22 4.33 84.95 0.37 1.59 16 15 N -0.86 -53.85 11.50 21.68 0.25 -53.61 16 16 Si 0.97 46.86 29.60 68.60 2.03 48.89 16 17 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 20 C 0.04 1.91 4.42 44.99 0.20 2.11 16 21 C -0.16 -5.91 9.81 30.62 0.30 -5.61 16 22 C -0.18 -6.98 9.46 30.62 0.29 -6.69 16 23 C -0.13 -4.99 7.53 22.64 0.17 -4.82 16 24 H 0.07 0.76 7.65 -2.39 -0.02 0.74 16 25 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 26 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.18 2.55 6.27 -2.91 -0.02 2.53 16 28 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.40 13.65 9.06 -74.06 -0.67 12.98 16 30 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 31 H 0.12 4.76 6.24 -2.39 -0.01 4.75 16 32 H 0.09 3.48 6.51 -2.39 -0.02 3.46 16 33 H 0.12 3.47 8.14 -2.38 -0.02 3.45 16 34 H 0.12 3.62 8.14 -2.39 -0.02 3.60 16 35 H 0.06 2.95 8.14 -2.38 -0.02 2.93 16 36 H 0.13 5.24 5.82 -2.91 -0.02 5.22 16 Total: -1.00 -80.26 304.40 3.45 -76.81 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.46 Total: 27.92 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 4.31 Total: -8.21 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -1.51 Total: -78.57 kcal Atomic # 8 Polarization: -65.01 SS G_CDS: -1.84 Total: -66.84 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -80.26 3.45 -76.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299438239.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.708 kcal (2) G-P(sol) polarization free energy of solvation -80.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds