Wall clock time and date at job start Mon Mar 30 2020 02:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35715 * 116.99993 * 2 1 4 4 C 1.39176 * 119.86072 * 0.02562 * 3 2 1 5 5 C 1.36549 * 120.37857 * 180.02562 * 4 3 2 6 6 C 1.39899 * 120.07792 * 0.02562 * 5 4 3 7 7 C 1.47202 * 120.13852 * 179.97438 * 6 5 4 8 8 O 1.21650 * 120.00133 * 143.44894 * 7 6 5 9 9 N 1.34781 * 120.00023 * 323.44731 * 7 6 5 10 10 C 1.36928 * 120.00083 * 8.89182 * 9 7 6 11 11 H 1.08001 * 120.00413 * 308.80913 * 10 9 7 12 12 C 1.39000 * 119.99819 * 128.79981 * 10 9 7 13 13 N 1.31397 * 120.00399 * 340.73548 * 12 10 9 14 14 Si 1.86808 * 119.99810 * 160.73223 * 12 10 9 15 15 H 1.48501 * 109.47146 * 180.02562 * 14 12 10 16 16 H 1.48495 * 109.47263 * 300.00664 * 14 12 10 17 17 H 1.48501 * 109.46802 * 60.00390 * 14 12 10 18 18 C 1.46496 * 119.99837 * 188.89257 * 9 7 6 19 19 C 1.53003 * 117.49884 * 180.72202 * 18 9 7 20 20 C 1.52996 * 117.50251 * 112.06294 * 18 9 7 21 21 C 1.40375 * 119.71860 * 0.25863 * 6 5 4 22 22 O 1.35667 * 120.18377 * 179.70039 * 21 6 5 23 23 C 1.38462 * 119.63169 * 359.44606 * 21 6 5 24 24 H 1.09001 * 109.47179 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46617 * 300.00193 * 1 2 3 26 26 H 1.08995 * 109.47435 * 59.99665 * 1 2 3 27 27 H 1.08004 * 119.81297 * 359.97438 * 4 3 2 28 28 H 1.07993 * 119.95907 * 180.02562 * 5 4 3 29 29 H 0.96998 * 120.00363 * 175.07487 * 13 12 10 30 30 H 1.09005 * 115.55077 * 326.38492 * 18 9 7 31 31 H 1.09005 * 117.49816 * 359.97438 * 19 18 9 32 32 H 1.09000 * 117.50012 * 145.01655 * 19 18 9 33 33 H 1.08999 * 117.50173 * 214.98331 * 20 18 9 34 34 H 1.09009 * 117.49517 * 359.97097 * 20 18 9 35 35 H 0.96696 * 113.99452 * 89.99911 * 22 21 6 36 36 H 1.08001 * 120.04423 * 180.27077 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2843 2.3746 0.0005 5 6 1.8932 3.5968 0.0000 6 6 3.2894 3.6846 -0.0016 7 6 3.9472 5.0014 -0.0027 8 8 4.9769 5.1676 0.6234 9 7 3.4087 6.0231 -0.6976 10 6 2.1630 5.8934 -1.2509 11 1 1.9330 5.0383 -1.8692 12 6 1.1942 6.8623 -1.0166 13 7 1.3174 7.6815 0.0033 14 14 -0.2828 6.9999 -2.1520 15 1 -1.1615 8.1041 -1.6895 16 1 0.1800 7.2821 -3.5345 17 1 -1.0409 5.7231 -2.1348 18 6 4.1563 7.2723 -0.8609 19 6 3.4840 8.4006 -1.6457 20 6 4.6473 7.6233 -2.2668 21 6 4.0604 2.5115 -0.0082 22 8 5.4150 2.5856 -0.0160 23 6 3.4307 1.2784 -0.0014 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2061 2.3119 0.0005 28 1 1.2962 4.4967 0.0009 29 1 0.6803 8.4026 0.1259 30 1 4.7921 7.5530 -0.0211 31 1 2.4856 8.2132 -2.0410 32 1 3.6778 9.4234 -1.3226 33 1 5.6059 8.1350 -2.3520 34 1 4.4144 6.9244 -3.0702 35 1 5.8128 2.6055 0.8652 36 1 4.0174 0.3716 -0.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299441698.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:19 Heat of formation + Delta-G solvation = -42.594422 kcal Electronic energy + Delta-G solvation = -21942.341366 eV Core-core repulsion = 18587.042897 eV Total energy + Delta-G solvation = -3355.298469 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.07957 -38.83962 -37.69118 -35.86610 -35.51387 -33.19817 -31.50455 -30.24163 -28.96814 -27.15861 -25.23877 -23.05765 -22.12042 -21.32190 -20.70118 -19.35638 -18.41740 -17.21903 -16.57060 -16.40245 -15.76243 -15.59587 -15.14152 -14.76163 -14.31344 -14.00233 -13.80708 -13.54012 -13.06695 -12.90016 -12.28425 -12.12141 -12.02224 -11.91107 -11.50960 -11.29892 -10.95099 -10.83251 -10.60301 -10.46582 -10.41826 -10.11214 -9.71291 -9.32463 -8.86407 -8.49073 -8.35240 -7.72064 -7.29725 -6.42592 -4.25457 1.55135 1.82395 3.04652 3.13931 3.16119 3.37399 3.73866 4.00275 4.31642 4.61202 4.77543 4.85068 5.08401 5.18095 5.21189 5.32337 5.43612 5.52938 5.74295 5.88690 5.98620 6.07927 6.12289 6.20812 6.43552 6.48944 6.64160 6.75977 6.89462 6.97974 7.06873 7.14924 7.25880 7.34796 7.62489 8.02664 8.17340 8.28931 8.95331 9.43348 9.88980 10.55931 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016525 B = 0.007530 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.958784 B = 3717.338484 C = 5068.595267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.145 3.855 4 C -0.237 4.237 5 C -0.011 4.011 6 C -0.159 4.159 7 C 0.541 3.459 8 O -0.592 6.592 9 N -0.412 5.412 10 C -0.355 4.355 11 H 0.086 0.914 12 C 0.058 3.942 13 N -0.837 5.837 14 Si 0.894 3.106 15 H -0.281 1.281 16 H -0.269 1.269 17 H -0.269 1.269 18 C 0.110 3.890 19 C -0.152 4.152 20 C -0.214 4.214 21 C 0.181 3.819 22 O -0.486 6.486 23 C -0.203 4.203 24 H 0.095 0.905 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.126 0.874 28 H 0.170 0.830 29 H 0.271 0.729 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.394 0.606 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 -7.945 -0.589 8.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.100 3.900 4 C -0.255 4.255 5 C -0.029 4.029 6 C -0.163 4.163 7 C 0.331 3.669 8 O -0.478 6.478 9 N -0.130 5.130 10 C -0.482 4.482 11 H 0.104 0.896 12 C -0.151 4.151 13 N -0.470 5.470 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.195 1.195 17 H -0.194 1.194 18 C 0.005 3.995 19 C -0.190 4.190 20 C -0.253 4.253 21 C 0.135 3.865 22 O -0.297 6.297 23 C -0.222 4.222 24 H 0.113 0.887 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.144 0.856 28 H 0.187 0.813 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.252 0.748 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.556 -7.889 -0.734 8.325 hybrid contribution -1.086 0.379 -0.206 1.168 sum -3.641 -7.510 -0.940 8.399 Atomic orbital electron populations 1.23024 0.78608 1.03386 1.01676 1.85963 1.21247 1.27478 1.88753 1.18939 0.91693 0.83960 0.95436 1.21022 0.99970 0.92284 1.12252 1.21813 0.93995 0.98549 0.88567 1.20341 0.94106 0.93656 1.08165 1.17953 0.84674 0.84562 0.79698 1.90595 1.27098 1.84667 1.45399 1.42533 1.14560 1.10110 1.45780 1.19151 0.86636 1.11750 1.30704 0.89647 1.25414 0.97718 0.97250 0.94692 1.70060 1.36902 1.16305 1.23721 0.86547 0.81625 0.78594 0.81301 1.20655 1.19455 1.19364 1.21155 0.97649 0.88057 0.92609 1.23081 0.97747 0.94794 1.03359 1.23350 0.98047 1.04929 0.98992 1.18121 0.83084 0.90121 0.95196 1.84643 1.15362 1.95938 1.33729 1.20335 0.91620 0.97763 1.12485 0.88656 0.92573 0.92539 0.85608 0.81302 0.91862 0.87743 0.87435 0.90536 0.90233 0.89471 0.74820 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.80 101.05 0.99 1.29 16 2 O -0.32 -4.70 10.48 -18.85 -0.20 -4.90 16 3 C 0.15 2.43 6.69 -39.05 -0.26 2.17 16 4 C -0.24 -4.06 8.96 -39.84 -0.36 -4.42 16 5 C -0.01 -0.22 7.84 -39.57 -0.31 -0.53 16 6 C -0.16 -3.53 5.53 -104.83 -0.58 -4.11 16 7 C 0.54 13.74 7.18 -12.62 -0.09 13.65 16 8 O -0.59 -15.96 15.80 -11.97 -0.19 -16.15 16 9 N -0.41 -10.40 2.72 -109.01 -0.30 -10.69 16 10 C -0.35 -8.62 5.34 -14.99 -0.08 -8.70 16 11 H 0.09 2.07 6.80 -52.49 -0.36 1.71 16 12 C 0.06 1.38 2.82 -17.46 -0.05 1.33 16 13 N -0.84 -20.97 12.00 55.50 0.67 -20.31 16 14 Si 0.89 18.24 29.21 -169.99 -4.96 13.28 16 15 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 17 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 18 C 0.11 2.64 5.65 -67.93 -0.38 2.25 16 19 C -0.15 -3.29 8.48 -26.69 -0.23 -3.52 16 20 C -0.21 -4.43 10.39 -26.70 -0.28 -4.71 16 21 C 0.18 3.59 6.68 -38.70 -0.26 3.34 16 22 O -0.49 -9.29 12.19 -35.91 -0.44 -9.72 16 23 C -0.20 -3.53 9.92 -39.32 -0.39 -3.92 16 24 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.54 7.65 -51.93 -0.40 0.15 16 26 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 27 H 0.13 1.82 6.26 -52.48 -0.33 1.49 16 28 H 0.17 3.72 5.43 -52.49 -0.28 3.43 16 29 H 0.27 6.45 8.32 -40.82 -0.34 6.11 16 30 H 0.10 2.57 7.77 -51.93 -0.40 2.17 16 31 H 0.11 2.48 4.95 -51.93 -0.26 2.22 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 34 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 35 H 0.39 6.02 9.06 45.56 0.41 6.43 16 36 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 303.51 15.07 4.57 4.57 Total: -1.00 -29.55 303.51 -6.38 -35.93 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -3.26 Total: 13.88 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -2.27 Total: -5.89 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.37 Total: -31.00 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.82 Total: -30.78 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -4.96 Total: 13.28 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.55 -6.38 -35.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299441698.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.668 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds