Wall clock time and date at job start Mon Mar 30 2020 02:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35715 * 116.99993 * 2 1 4 4 C 1.39176 * 119.86072 * 0.02562 * 3 2 1 5 5 C 1.36549 * 120.37857 * 180.02562 * 4 3 2 6 6 C 1.39899 * 120.07792 * 0.02562 * 5 4 3 7 7 C 1.47202 * 120.13852 * 179.97438 * 6 5 4 8 8 O 1.21650 * 120.00133 * 143.44894 * 7 6 5 9 9 N 1.34781 * 120.00023 * 323.44731 * 7 6 5 10 10 C 1.36928 * 120.00083 * 8.89182 * 9 7 6 11 11 H 1.08001 * 120.00413 * 308.80913 * 10 9 7 12 12 C 1.39000 * 119.99819 * 128.79981 * 10 9 7 13 13 N 1.31397 * 120.00399 * 340.73548 * 12 10 9 14 14 Si 1.86808 * 119.99810 * 160.73223 * 12 10 9 15 15 H 1.48501 * 109.47146 * 180.02562 * 14 12 10 16 16 H 1.48495 * 109.47263 * 300.00664 * 14 12 10 17 17 H 1.48501 * 109.46802 * 60.00390 * 14 12 10 18 18 C 1.46496 * 119.99837 * 188.89257 * 9 7 6 19 19 C 1.53003 * 117.49884 * 180.72202 * 18 9 7 20 20 C 1.52996 * 117.50251 * 112.06294 * 18 9 7 21 21 C 1.40375 * 119.71860 * 0.25863 * 6 5 4 22 22 O 1.35667 * 120.18377 * 179.70039 * 21 6 5 23 23 C 1.38462 * 119.63169 * 359.44606 * 21 6 5 24 24 H 1.09001 * 109.47179 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46617 * 300.00193 * 1 2 3 26 26 H 1.08995 * 109.47435 * 59.99665 * 1 2 3 27 27 H 1.08004 * 119.81297 * 359.97438 * 4 3 2 28 28 H 1.07993 * 119.95907 * 180.02562 * 5 4 3 29 29 H 0.96998 * 120.00363 * 175.07487 * 13 12 10 30 30 H 1.09005 * 115.55077 * 326.38492 * 18 9 7 31 31 H 1.09005 * 117.49816 * 359.97438 * 19 18 9 32 32 H 1.09000 * 117.50012 * 145.01655 * 19 18 9 33 33 H 1.08999 * 117.50173 * 214.98331 * 20 18 9 34 34 H 1.09009 * 117.49517 * 359.97097 * 20 18 9 35 35 H 0.96696 * 113.99452 * 89.99911 * 22 21 6 36 36 H 1.08001 * 120.04423 * 180.27077 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2843 2.3746 0.0005 5 6 1.8932 3.5968 0.0000 6 6 3.2894 3.6846 -0.0016 7 6 3.9472 5.0014 -0.0027 8 8 4.9769 5.1676 0.6234 9 7 3.4087 6.0231 -0.6976 10 6 2.1630 5.8934 -1.2509 11 1 1.9330 5.0383 -1.8692 12 6 1.1942 6.8623 -1.0166 13 7 1.3174 7.6815 0.0033 14 14 -0.2828 6.9999 -2.1520 15 1 -1.1615 8.1041 -1.6895 16 1 0.1800 7.2821 -3.5345 17 1 -1.0409 5.7231 -2.1348 18 6 4.1563 7.2723 -0.8609 19 6 3.4840 8.4006 -1.6457 20 6 4.6473 7.6233 -2.2668 21 6 4.0604 2.5115 -0.0082 22 8 5.4150 2.5856 -0.0160 23 6 3.4307 1.2784 -0.0014 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2061 2.3119 0.0005 28 1 1.2962 4.4967 0.0009 29 1 0.6803 8.4026 0.1259 30 1 4.7921 7.5530 -0.0211 31 1 2.4856 8.2132 -2.0410 32 1 3.6778 9.4234 -1.3226 33 1 5.6059 8.1350 -2.3520 34 1 4.4144 6.9244 -3.0702 35 1 5.8128 2.6055 0.8652 36 1 4.0174 0.3716 -0.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299441698.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:18 Heat of formation + Delta-G solvation = -61.680586 kcal Electronic energy + Delta-G solvation = -21943.169005 eV Core-core repulsion = 18587.042897 eV Total energy + Delta-G solvation = -3356.126107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.54829 -40.39431 -39.19758 -37.69641 -36.96308 -34.98332 -33.34764 -31.65793 -30.45053 -28.15337 -27.10755 -24.62042 -23.60182 -23.01368 -22.33473 -21.18294 -19.82255 -18.89184 -18.14673 -17.81463 -17.30570 -16.88804 -16.66601 -16.47332 -15.81505 -15.55795 -15.40104 -15.09194 -14.70286 -14.52028 -13.86408 -13.70906 -13.33038 -13.23228 -13.05818 -12.95839 -12.63390 -12.25762 -12.12870 -12.07865 -11.85541 -11.59526 -11.44586 -11.10724 -10.70137 -10.33993 -9.79603 -9.23766 -9.08973 -8.24710 -6.13648 0.06256 0.37449 1.43246 1.48809 1.55684 2.04917 2.24252 2.29827 2.69450 2.85406 3.04684 3.38960 3.43747 3.88687 4.10670 4.14326 4.21118 4.34153 4.35337 4.45172 4.45442 4.51823 4.64706 4.78168 4.83521 4.98076 5.04737 5.18414 5.27261 5.43651 5.45344 5.50471 5.52972 5.67134 6.16838 6.38152 6.42206 6.80537 7.09830 7.55097 8.02778 8.75268 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016525 B = 0.007530 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.958784 B = 3717.338484 C = 5068.595267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.323 6.323 3 C 0.161 3.839 4 C -0.229 4.229 5 C -0.018 4.018 6 C -0.197 4.197 7 C 0.522 3.478 8 O -0.626 6.626 9 N -0.421 5.421 10 C -0.362 4.362 11 H 0.084 0.916 12 C 0.032 3.968 13 N -0.871 5.871 14 Si 0.955 3.045 15 H -0.281 1.281 16 H -0.269 1.269 17 H -0.256 1.256 18 C 0.073 3.927 19 C -0.141 4.141 20 C -0.188 4.188 21 C 0.177 3.823 22 O -0.498 6.498 23 C -0.200 4.200 24 H 0.127 0.873 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.156 0.844 28 H 0.149 0.851 29 H 0.273 0.727 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.408 0.592 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.610 -9.533 -1.644 10.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.115 3.885 4 C -0.247 4.247 5 C -0.037 4.037 6 C -0.200 4.200 7 C 0.314 3.686 8 O -0.514 6.514 9 N -0.137 5.137 10 C -0.489 4.489 11 H 0.101 0.899 12 C -0.174 4.174 13 N -0.505 5.505 14 Si 0.778 3.222 15 H -0.206 1.206 16 H -0.193 1.193 17 H -0.180 1.180 18 C -0.032 4.032 19 C -0.179 4.179 20 C -0.227 4.227 21 C 0.131 3.869 22 O -0.310 6.310 23 C -0.219 4.219 24 H 0.145 0.855 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.174 0.826 28 H 0.166 0.834 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.267 0.733 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.240 -9.491 -1.797 10.549 hybrid contribution -0.596 0.756 0.175 0.979 sum -4.836 -8.734 -1.622 10.115 Atomic orbital electron populations 1.23437 0.76059 1.05910 1.02530 1.85988 1.23774 1.25917 1.87952 1.18959 0.91576 0.84693 0.93285 1.21202 1.01487 0.91104 1.10915 1.21558 0.93111 0.99182 0.89853 1.20299 0.95154 0.92834 1.11743 1.18627 0.84690 0.85982 0.79340 1.90532 1.28583 1.85485 1.46810 1.42759 1.15053 1.10366 1.45538 1.19249 0.86772 1.12194 1.30665 0.89890 1.26023 0.99642 0.96400 0.95383 1.70156 1.38148 1.16986 1.25177 0.85603 0.78520 0.78922 0.79193 1.20637 1.19349 1.18035 1.21261 0.99229 0.88950 0.93806 1.23025 0.97430 0.94981 1.02415 1.23365 0.99011 1.03873 0.96449 1.18225 0.83171 0.90331 0.95213 1.84587 1.15390 1.95979 1.35081 1.20497 0.92362 0.97433 1.11594 0.85496 0.91576 0.91753 0.82614 0.83400 0.91759 0.89710 0.88678 0.88860 0.87342 0.89859 0.73291 0.82779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.80 113.37 1.11 1.35 16 2 O -0.32 -8.27 10.48 -90.36 -0.95 -9.22 16 3 C 0.16 5.00 6.69 22.61 0.15 5.15 16 4 C -0.23 -7.41 8.96 22.10 0.20 -7.21 16 5 C -0.02 -0.76 7.84 22.28 0.17 -0.58 16 6 C -0.20 -8.95 5.53 -20.00 -0.11 -9.06 16 7 C 0.52 27.68 7.18 86.60 0.62 28.30 16 8 O -0.63 -35.46 15.80 12.26 0.19 -35.27 16 9 N -0.42 -21.93 2.72 -617.04 -1.68 -23.60 16 10 C -0.36 -17.88 5.34 84.08 0.45 -17.43 16 11 H 0.08 4.08 6.80 -2.91 -0.02 4.06 16 12 C 0.03 1.52 2.82 84.94 0.24 1.76 16 13 N -0.87 -44.31 12.00 21.67 0.26 -44.05 16 14 Si 0.95 36.90 29.21 68.60 2.00 38.90 16 15 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 16 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 17 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 18 C 0.07 3.56 5.65 44.99 0.25 3.82 16 19 C -0.14 -6.09 8.48 30.62 0.26 -5.83 16 20 C -0.19 -7.70 10.39 30.62 0.32 -7.38 16 21 C 0.18 7.03 6.68 22.84 0.15 7.19 16 22 O -0.50 -19.27 12.19 -73.39 -0.89 -20.16 16 23 C -0.20 -6.61 9.92 22.44 0.22 -6.39 16 24 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 1.01 7.65 -2.39 -0.02 0.99 16 26 H 0.06 1.01 7.65 -2.39 -0.02 0.99 16 27 H 0.16 4.00 6.26 -2.91 -0.02 3.98 16 28 H 0.15 6.65 5.43 -2.91 -0.02 6.64 16 29 H 0.27 13.10 8.32 -92.71 -0.77 12.33 16 30 H 0.09 4.40 7.77 -2.38 -0.02 4.39 16 31 H 0.10 4.37 4.95 -2.38 -0.01 4.36 16 32 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 33 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 34 H 0.08 3.47 8.14 -2.38 -0.02 3.45 16 35 H 0.41 12.77 9.06 -74.06 -0.67 12.10 16 36 H 0.15 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -65.17 303.51 3.44 -61.74 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: 0.46 Total: 37.98 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 4.04 Total: -6.32 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: -1.42 Total: -67.65 kcal Atomic # 8 Polarization: -63.00 SS G_CDS: -1.65 Total: -64.65 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.00 Total: 38.90 kcal Total: -65.17 3.44 -61.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299441698.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.056 kcal (2) G-P(sol) polarization free energy of solvation -65.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds