Wall clock time and date at job start Mon Mar 30 2020 01:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21256 * 119.99948 * 2 1 4 4 C 1.47185 * 120.00440 * 180.02562 * 2 1 3 5 5 C 1.39880 * 120.13880 * 359.97438 * 4 2 1 6 6 C 1.37895 * 119.93187 * 180.02562 * 5 4 2 7 7 C 1.38334 * 120.23542 * 0.02562 * 6 5 4 8 8 C 1.38845 * 120.29381 * 0.02562 * 7 6 5 9 9 O 1.35920 * 119.97077 * 179.97438 * 8 7 6 10 10 C 1.42905 * 116.99681 * 5.37317 * 9 8 7 11 11 H 1.08995 * 109.47186 * 35.23964 * 10 9 8 12 12 C 1.53011 * 109.46903 * 275.23851 * 10 9 8 13 13 C 1.50700 * 109.46966 * 155.24304 * 10 9 8 14 14 O 1.21287 * 120.00100 * 5.00095 * 13 10 9 15 15 N 1.34777 * 119.99723 * 184.99502 * 13 10 9 16 16 C 1.37100 * 119.99875 * 179.97438 * 15 13 10 17 17 H 1.08004 * 119.99625 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00135 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00271 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99974 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 90.00348 * 20 18 16 22 22 H 1.48499 * 109.47377 * 209.99929 * 20 18 16 23 23 H 1.48495 * 109.47296 * 330.00752 * 20 18 16 24 24 C 1.38419 * 120.06194 * 0.25339 * 8 7 6 25 25 H 1.08993 * 109.47444 * 269.99694 * 1 2 3 26 26 H 1.09001 * 109.47232 * 30.00248 * 1 2 3 27 27 H 1.09010 * 109.46791 * 149.99876 * 1 2 3 28 28 H 1.07994 * 120.03853 * 0.02661 * 5 4 2 29 29 H 1.07996 * 119.88051 * 179.97438 * 6 5 4 30 30 H 1.07999 * 119.85226 * 180.02562 * 7 6 5 31 31 H 1.08995 * 109.47060 * 300.00549 * 12 10 9 32 32 H 1.09001 * 109.46445 * 180.02562 * 12 10 9 33 33 H 1.09001 * 109.46598 * 60.00365 * 12 10 9 34 34 H 0.96994 * 120.00622 * 0.02562 * 15 13 10 35 35 H 0.96992 * 120.00151 * 180.02562 * 19 18 16 36 36 H 1.08002 * 120.11942 * 179.72477 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2746 -0.0006 5 6 1.5466 -2.4877 -0.0006 6 6 2.2405 -3.6794 -0.0006 7 6 3.6238 -3.6800 0.0000 8 6 4.3247 -2.4814 0.0010 9 8 5.6839 -2.4897 0.0021 10 6 6.3250 -3.7612 -0.1172 11 1 5.7387 -4.4035 -0.7743 12 6 6.4341 -4.4090 1.2647 13 6 7.7042 -3.5761 -0.6955 14 8 8.1341 -2.4593 -0.8931 15 7 8.4601 -4.6516 -0.9930 16 6 9.7147 -4.4832 -1.5197 17 1 10.0974 -3.4886 -1.6957 18 6 10.4938 -5.5919 -1.8269 19 7 11.6965 -5.4305 -2.3312 20 14 9.8321 -7.3119 -1.5218 21 1 9.1169 -7.7891 -2.7327 22 1 10.9596 -8.2296 -1.2191 23 1 8.8936 -7.2844 -0.3714 24 6 3.6406 -1.2781 0.0069 25 1 -0.3634 -0.0001 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3633 -0.8901 -0.5139 28 1 0.4667 -2.4912 -0.0006 29 1 1.7020 -4.6155 -0.0002 30 1 4.1610 -4.6169 -0.0005 31 1 7.0204 -3.7667 1.9218 32 1 6.9236 -5.3787 1.1737 33 1 5.4365 -4.5429 1.6829 34 1 8.1163 -5.5447 -0.8353 35 1 12.2402 -6.2044 -2.5460 36 1 4.1849 -0.3453 0.0122 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299638062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:51 Heat of formation + Delta-G solvation = -104.676833 kcal Electronic energy + Delta-G solvation = -20605.496363 eV Core-core repulsion = 17247.505798 eV Total energy + Delta-G solvation = -3357.990564 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.69883 -40.71273 -39.81736 -38.06426 -36.14529 -34.10433 -33.00108 -32.71372 -31.28211 -29.81122 -27.38596 -25.50664 -24.51953 -23.30906 -21.64330 -21.02590 -20.16574 -19.16353 -17.94282 -17.44566 -16.94412 -16.87521 -16.63103 -16.27568 -16.02587 -15.85388 -15.36942 -15.15983 -14.72976 -14.67034 -14.31207 -14.22904 -13.60362 -13.42515 -13.18062 -13.03434 -12.99461 -12.90895 -12.55039 -12.46747 -12.10132 -12.00456 -11.93889 -11.60432 -10.85070 -10.53841 -10.36004 -10.07969 -9.28554 -8.47315 -6.11659 -0.41654 0.39511 1.27980 1.33487 1.38836 1.44250 1.74744 1.80329 2.20401 2.77286 2.84815 3.06544 3.16248 3.60818 3.82340 3.88453 3.93123 4.01678 4.07179 4.21710 4.31721 4.45823 4.59086 4.66064 4.70369 4.80565 4.89180 5.07431 5.13119 5.28856 5.30046 5.39462 5.44653 5.71064 5.83284 6.31771 6.50785 6.51387 6.76042 7.23971 7.78396 8.69937 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.035447 B = 0.003579 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.720484 B = 7820.780653 C = 8317.578547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.391 3.609 3 O -0.511 6.511 4 C -0.149 4.149 5 C -0.095 4.095 6 C -0.081 4.081 7 C -0.180 4.180 8 C 0.096 3.904 9 O -0.320 6.320 10 C 0.082 3.918 11 H 0.124 0.876 12 C -0.169 4.169 13 C 0.445 3.555 14 O -0.619 6.619 15 N -0.570 5.570 16 C -0.337 4.337 17 H 0.052 0.948 18 C -0.011 4.011 19 N -0.928 5.928 20 Si 0.965 3.035 21 H -0.252 1.252 22 H -0.272 1.272 23 H -0.223 1.223 24 C -0.131 4.131 25 H 0.121 0.879 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.182 0.818 29 H 0.178 0.822 30 H 0.157 0.843 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.394 0.606 35 H 0.283 0.717 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.722 -6.057 7.577 30.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.273 3.727 3 O -0.390 6.390 4 C -0.150 4.150 5 C -0.113 4.113 6 C -0.098 4.098 7 C -0.199 4.199 8 C 0.051 3.949 9 O -0.234 6.234 10 C 0.023 3.977 11 H 0.141 0.859 12 C -0.226 4.226 13 C 0.232 3.768 14 O -0.504 6.504 15 N -0.212 5.212 16 C -0.466 4.466 17 H 0.070 0.930 18 C -0.210 4.210 19 N -0.568 5.568 20 Si 0.783 3.217 21 H -0.177 1.177 22 H -0.197 1.197 23 H -0.146 1.146 24 C -0.150 4.150 25 H 0.139 0.861 26 H 0.107 0.893 27 H 0.139 0.861 28 H 0.199 0.801 29 H 0.196 0.804 30 H 0.175 0.825 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.231 0.769 35 H 0.092 0.908 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -27.783 -4.680 7.382 29.125 hybrid contribution 1.199 -0.315 -0.234 1.262 sum -26.583 -4.995 7.148 27.977 Atomic orbital electron populations 1.22272 0.88919 1.06664 1.06656 1.23364 0.94052 0.86408 0.68892 1.90556 1.73692 1.36014 1.38731 1.20554 0.92020 0.97020 1.05442 1.21858 1.02218 0.89644 0.97571 1.21478 0.92200 1.00165 0.95981 1.21948 0.96962 0.96687 1.04272 1.19266 0.82092 0.95306 0.98231 1.86231 1.17315 1.31994 1.87863 1.22200 0.90573 0.84536 1.00400 0.85857 1.22372 1.05220 1.01581 0.93435 1.20478 0.88171 0.84710 0.83416 1.90579 1.74887 1.26483 1.58438 1.41771 1.14500 1.07361 1.57535 1.18987 0.91492 0.95307 1.40839 0.92970 1.26204 0.95201 1.04228 0.95400 1.69799 1.10868 1.33607 1.42523 0.85381 0.79674 0.75686 0.80933 1.17654 1.19705 1.14572 1.20677 0.94556 0.96227 1.03542 0.86070 0.89255 0.86144 0.80089 0.80448 0.82519 0.92708 0.88335 0.87794 0.76924 0.90777 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.63 9.75 71.23 0.69 -0.93 16 2 C 0.39 8.31 7.23 28.04 0.20 8.51 16 3 O -0.51 -16.24 17.09 -2.96 -0.05 -16.29 16 4 C -0.15 -3.26 5.87 -20.16 -0.12 -3.38 16 5 C -0.10 -1.17 9.36 22.59 0.21 -0.96 16 6 C -0.08 -0.97 10.02 22.21 0.22 -0.75 16 7 C -0.18 -3.49 8.23 22.44 0.18 -3.31 16 8 C 0.10 2.87 6.59 22.46 0.15 3.02 16 9 O -0.32 -12.33 9.34 -73.66 -0.69 -13.02 16 10 C 0.08 2.76 2.64 29.85 0.08 2.84 16 11 H 0.12 3.13 6.31 -2.39 -0.02 3.11 16 12 C -0.17 -4.23 9.12 71.99 0.66 -3.58 16 13 C 0.45 21.43 7.13 87.66 0.63 22.05 16 14 O -0.62 -37.92 16.08 15.94 0.26 -37.67 16 15 N -0.57 -26.91 5.05 -306.99 -1.55 -28.46 16 16 C -0.34 -19.88 10.16 84.04 0.85 -19.02 16 17 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 18 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 19 N -0.93 -55.44 13.96 21.66 0.30 -55.14 16 20 Si 0.96 36.75 27.74 68.60 1.90 38.65 16 21 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 22 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.22 -6.80 6.52 99.48 0.65 -6.15 16 24 C -0.13 -4.04 9.54 22.68 0.22 -3.82 16 25 H 0.12 0.56 8.14 -2.39 -0.02 0.55 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.12 0.25 6.47 -2.38 -0.02 0.23 16 28 H 0.18 0.46 6.35 -2.91 -0.02 0.44 16 29 H 0.18 0.62 8.06 -2.91 -0.02 0.59 16 30 H 0.16 2.29 5.40 -2.91 -0.02 2.27 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.10 2.05 7.92 -2.39 -0.02 2.03 16 33 H 0.10 1.85 6.89 -2.39 -0.02 1.84 16 34 H 0.39 14.68 5.55 -92.71 -0.51 14.17 16 35 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.10 3.82 7.65 -2.91 -0.02 3.80 16 Total: -1.00 -90.97 311.83 5.17 -85.81 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.55 Total: 25.58 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 4.44 Total: 0.55 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -1.25 Total: -83.60 kcal Atomic # 8 Polarization: -66.50 SS G_CDS: -0.48 Total: -66.98 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 1.90 Total: 38.65 kcal Total: -90.97 5.17 -85.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299638062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.871 kcal (2) G-P(sol) polarization free energy of solvation -90.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds