Wall clock time and date at job start Mon Mar 30 2020 01:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46895 * 109.47260 * 239.99238 * 2 1 3 13 13 C 1.46908 * 110.99742 * 85.00495 * 12 2 1 14 14 C 1.52995 * 109.47269 * 180.02562 * 13 12 2 15 15 O 1.42897 * 109.24042 * 65.55239 * 14 13 12 16 16 C 1.52595 * 109.24188 * 306.15084 * 14 13 12 17 17 C 1.53032 * 109.98761 * 169.71418 * 16 14 13 18 18 S 1.81669 * 108.99912 * 63.64858 * 17 16 14 19 19 O 1.42098 * 108.66734 * 191.37112 * 18 17 16 20 20 O 1.42102 * 108.74723 * 60.06335 * 18 17 16 21 21 C 1.81670 * 101.30952 * 305.70255 * 18 17 16 22 22 C 1.52587 * 109.24597 * 184.99785 * 14 13 12 23 23 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 25 25 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 1.00896 * 111.00382 * 208.94825 * 12 2 1 28 28 H 1.09007 * 109.46656 * 300.00086 * 13 12 2 29 29 H 1.09000 * 109.47110 * 59.99426 * 13 12 2 30 30 H 0.96700 * 114.00219 * 300.00003 * 15 14 13 31 31 H 1.08999 * 109.38452 * 289.87792 * 16 14 13 32 32 H 1.08998 * 109.38120 * 49.55549 * 16 14 13 33 33 H 1.09002 * 109.55122 * 303.79557 * 17 16 14 34 34 H 1.08999 * 109.54801 * 183.50314 * 17 16 14 35 35 H 1.09008 * 109.54779 * 294.44532 * 21 18 17 36 36 H 1.08996 * 109.55415 * 174.15389 * 21 18 17 37 37 H 1.08997 * 109.38156 * 310.44506 * 22 14 13 38 38 H 1.09002 * 109.38107 * 70.11899 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.8178 -1.1113 4.0023 10 1 1.8417 -0.4090 5.2205 11 1 1.8384 -2.5122 4.0140 12 7 2.0196 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3469 14 6 2.5951 -0.5334 -3.5744 15 8 1.6399 -1.5286 -3.9473 16 6 3.9185 -1.2112 -3.2312 17 6 4.3187 -2.1743 -4.3511 18 16 4.6066 -1.2249 -5.8729 19 8 4.7164 -2.1321 -6.9611 20 8 5.6517 -0.2912 -5.6379 21 6 3.0404 -0.3175 -6.0283 22 6 2.7767 0.4472 -4.7292 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7164 1.1670 3.4843 27 1 2.9173 -1.1205 -1.0286 28 1 1.0871 0.6162 -2.5525 29 1 2.7589 1.0461 -2.1182 30 1 1.4655 -2.1842 -3.2583 31 1 4.6928 -0.4534 -3.1116 32 1 3.8099 -1.7654 -2.2989 33 1 3.5174 -2.8945 -4.5166 34 1 5.2315 -2.7001 -4.0710 35 1 2.2276 -1.0210 -6.2088 36 1 3.1071 0.3858 -6.8584 37 1 1.8735 1.0473 -4.8396 38 1 3.6212 1.1031 -4.5175 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309534704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:52 Heat of formation + Delta-G solvation = -124.406692 kcal Electronic energy + Delta-G solvation = -20693.027440 eV Core-core repulsion = 17469.625276 eV Total energy + Delta-G solvation = -3223.402164 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.41866 -37.07280 -36.11455 -35.57398 -33.70269 -32.57597 -32.01765 -29.59146 -27.04729 -25.33113 -24.02184 -23.16525 -20.43136 -19.83042 -18.93576 -17.15163 -17.04074 -16.45564 -16.15002 -15.75281 -15.05674 -14.89013 -14.74322 -14.24790 -13.95373 -13.54340 -13.08034 -12.92162 -12.74231 -12.39461 -12.21967 -12.10446 -11.97955 -11.77923 -11.73314 -11.34373 -11.14428 -10.94479 -10.87285 -10.74876 -10.42126 -10.24879 -10.23692 -10.03683 -9.65751 -8.93949 -8.57661 -7.52304 -6.12595 -4.20184 -0.04714 2.56421 3.24139 3.29586 3.31335 3.54113 3.81143 4.18751 4.29330 4.37578 4.44279 4.54241 4.66868 4.84708 5.02422 5.08875 5.19314 5.32916 5.44811 5.48252 5.67841 5.74107 5.85494 6.03679 6.10271 6.22793 6.76238 7.02119 7.09920 7.34275 7.65120 7.75515 7.77955 8.12948 8.19848 8.48375 8.88153 9.46435 10.93549 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.034510 B = 0.004175 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.175869 B = 6705.300118 C = 7075.616140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.691 5.691 13 C 0.035 3.965 14 C 0.124 3.876 15 O -0.557 6.557 16 C -0.145 4.145 17 C -0.590 4.590 18 S 2.413 3.587 19 O -0.952 6.952 20 O -0.944 6.944 21 C -0.591 4.591 22 C -0.096 4.096 23 H 0.032 0.968 24 H 0.080 0.920 25 H 0.004 0.996 26 H 0.263 0.737 27 H 0.330 0.670 28 H 0.079 0.921 29 H 0.033 0.967 30 H 0.391 0.609 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.140 0.860 34 H 0.131 0.869 35 H 0.143 0.857 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.809 -2.590 -13.931 14.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.106 3.894 3 H 0.020 0.980 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.324 5.324 13 C -0.095 4.095 14 C 0.082 3.918 15 O -0.366 6.366 16 C -0.183 4.183 17 C -0.720 4.720 18 S 2.596 3.404 19 O -0.949 6.949 20 O -0.941 6.941 21 C -0.721 4.721 22 C -0.135 4.135 23 H 0.051 0.949 24 H 0.099 0.901 25 H 0.023 0.977 26 H 0.072 0.928 27 H 0.149 0.851 28 H 0.098 0.902 29 H 0.051 0.949 30 H 0.241 0.759 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.158 0.842 34 H 0.149 0.851 35 H 0.162 0.838 36 H 0.148 0.852 37 H 0.112 0.888 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.854 -2.356 -15.049 15.713 hybrid contribution 0.321 -0.255 2.167 2.206 sum 4.174 -2.611 -12.882 13.791 Atomic orbital electron populations 1.21712 0.97724 0.99391 0.99423 1.19099 0.92691 0.92377 0.85253 0.97976 1.21177 1.31962 1.12584 0.90446 0.92324 1.24915 0.94940 0.94929 0.99099 1.69882 1.36332 1.22689 1.23745 0.86572 0.79093 0.79746 0.82039 1.20309 1.21246 1.20178 1.60844 1.31906 1.33245 1.06404 1.22555 1.01124 0.94680 0.91173 1.21225 0.87687 0.88697 0.94154 1.86323 1.62408 1.42460 1.45370 1.22099 0.98469 0.98724 0.99055 1.30032 1.11488 1.12724 1.17795 1.08092 0.77847 0.77048 0.77402 1.93571 1.86332 1.64133 1.50834 1.93576 1.52134 1.62425 1.85950 1.30033 1.22414 1.13739 1.05945 1.21281 1.05166 0.97234 0.89822 0.94921 0.90117 0.97675 0.92752 0.85105 0.90250 0.94888 0.75865 0.89157 0.87881 0.84195 0.85072 0.83840 0.85249 0.88757 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.91 9.19 37.16 0.34 -2.57 16 2 C 0.21 4.99 2.60 -68.87 -0.18 4.81 16 3 H 0.00 0.07 7.80 -51.93 -0.40 -0.34 16 4 C -0.52 -13.50 8.59 -34.44 -0.30 -13.79 16 5 H 0.06 1.47 7.62 -52.49 -0.40 1.07 16 6 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 7 N -0.89 -24.47 11.33 55.43 0.63 -23.84 16 8 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.69 -12.58 5.81 -107.95 -0.63 -13.21 16 13 C 0.04 0.53 4.68 -3.82 -0.02 0.52 16 14 C 0.12 1.45 0.77 -91.04 -0.07 1.38 16 15 O -0.56 -6.53 10.72 -35.23 -0.38 -6.91 16 16 C -0.14 -1.55 4.60 -26.92 -0.12 -1.68 16 17 C -0.59 -5.36 6.17 37.17 0.23 -5.13 16 18 S 2.41 25.23 5.30 -107.50 -0.57 24.66 16 19 O -0.95 -12.99 18.10 -57.82 -1.05 -14.04 16 20 O -0.94 -12.76 17.96 -57.82 -1.04 -13.80 16 21 C -0.59 -5.26 6.17 37.18 0.23 -5.04 16 22 C -0.10 -0.97 4.82 -26.92 -0.13 -1.10 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.08 2.09 6.08 -51.93 -0.32 1.78 16 25 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 26 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.33 5.72 5.84 -39.29 -0.23 5.49 16 28 H 0.08 1.29 7.44 -51.92 -0.39 0.90 16 29 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 30 H 0.39 4.36 8.65 45.56 0.39 4.76 16 31 H 0.09 0.94 8.02 -51.93 -0.42 0.52 16 32 H 0.10 1.15 5.91 -51.93 -0.31 0.85 16 33 H 0.14 1.11 7.35 -51.93 -0.38 0.73 16 34 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.14 1.22 7.35 -51.92 -0.38 0.84 16 36 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 38 H 0.09 0.87 8.02 -51.93 -0.42 0.45 16 LS Contribution 309.39 15.07 4.66 4.66 Total: -1.00 -32.16 309.39 -8.37 -40.54 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.87 Total: 7.51 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -0.11 Total: -21.01 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.00 Total: -37.05 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -2.46 Total: -34.75 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 25.23 SS G_CDS: -0.57 Total: 24.66 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.16 -8.37 -40.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309534704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.868 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds