Wall clock time and date at job start Mon Mar 30 2020 01:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46895 * 109.47260 * 239.99238 * 2 1 3 13 13 C 1.46908 * 110.99742 * 85.00495 * 12 2 1 14 14 C 1.52995 * 109.47269 * 180.02562 * 13 12 2 15 15 O 1.42897 * 109.24042 * 65.55239 * 14 13 12 16 16 C 1.52595 * 109.24188 * 306.15084 * 14 13 12 17 17 C 1.53032 * 109.98761 * 169.71418 * 16 14 13 18 18 S 1.81669 * 108.99912 * 63.64858 * 17 16 14 19 19 O 1.42098 * 108.66734 * 191.37112 * 18 17 16 20 20 O 1.42102 * 108.74723 * 60.06335 * 18 17 16 21 21 C 1.81670 * 101.30952 * 305.70255 * 18 17 16 22 22 C 1.52587 * 109.24597 * 184.99785 * 14 13 12 23 23 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 25 25 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 1.00896 * 111.00382 * 208.94825 * 12 2 1 28 28 H 1.09007 * 109.46656 * 300.00086 * 13 12 2 29 29 H 1.09000 * 109.47110 * 59.99426 * 13 12 2 30 30 H 0.96700 * 114.00219 * 300.00003 * 15 14 13 31 31 H 1.08999 * 109.38452 * 289.87792 * 16 14 13 32 32 H 1.08998 * 109.38120 * 49.55549 * 16 14 13 33 33 H 1.09002 * 109.55122 * 303.79557 * 17 16 14 34 34 H 1.08999 * 109.54801 * 183.50314 * 17 16 14 35 35 H 1.09008 * 109.54779 * 294.44532 * 21 18 17 36 36 H 1.08996 * 109.55415 * 174.15389 * 21 18 17 37 37 H 1.08997 * 109.38156 * 310.44506 * 22 14 13 38 38 H 1.09002 * 109.38107 * 70.11899 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.8178 -1.1113 4.0023 10 1 1.8417 -0.4090 5.2205 11 1 1.8384 -2.5122 4.0140 12 7 2.0196 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3469 14 6 2.5951 -0.5334 -3.5744 15 8 1.6399 -1.5286 -3.9473 16 6 3.9185 -1.2112 -3.2312 17 6 4.3187 -2.1743 -4.3511 18 16 4.6066 -1.2249 -5.8729 19 8 4.7164 -2.1321 -6.9611 20 8 5.6517 -0.2912 -5.6379 21 6 3.0404 -0.3175 -6.0283 22 6 2.7767 0.4472 -4.7292 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7164 1.1670 3.4843 27 1 2.9173 -1.1205 -1.0286 28 1 1.0871 0.6162 -2.5525 29 1 2.7589 1.0461 -2.1182 30 1 1.4655 -2.1842 -3.2583 31 1 4.6928 -0.4534 -3.1116 32 1 3.8099 -1.7654 -2.2989 33 1 3.5174 -2.8945 -4.5166 34 1 5.2315 -2.7001 -4.0710 35 1 2.2276 -1.0210 -6.2088 36 1 3.1071 0.3858 -6.8584 37 1 1.8735 1.0473 -4.8396 38 1 3.6212 1.1031 -4.5175 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309534704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:52 Heat of formation + Delta-G solvation = -151.178883 kcal Electronic energy + Delta-G solvation = -20694.188369 eV Core-core repulsion = 17469.625276 eV Total energy + Delta-G solvation = -3224.563093 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41944 -38.02356 -37.20707 -37.04774 -34.60848 -34.32951 -32.83179 -31.13591 -28.36400 -27.25503 -24.93618 -24.32518 -21.76330 -21.22418 -19.78944 -18.72620 -17.96785 -17.43968 -17.26115 -16.81105 -16.57949 -16.17550 -15.85264 -15.63811 -14.89106 -14.71364 -14.51461 -13.98355 -13.91144 -13.51807 -13.36222 -13.19093 -13.06137 -12.94888 -12.77401 -12.67768 -12.64844 -12.52725 -12.42448 -12.17774 -12.03568 -11.68949 -11.63522 -11.09890 -10.80117 -10.67899 -10.55100 -9.10254 -8.12806 -6.26858 -0.85987 1.44291 1.45355 1.52570 1.78314 2.41739 2.73934 2.95980 3.16619 3.30646 3.40987 3.56408 3.69168 3.80321 3.95253 4.08789 4.23119 4.44191 4.48684 4.66822 4.73327 4.83314 4.93115 4.94315 4.97835 5.09330 5.13559 5.22197 5.27019 5.47672 5.66599 5.87263 6.23551 6.42442 6.74618 6.87330 7.00483 7.44006 8.92421 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.034510 B = 0.004175 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.175869 B = 6705.300118 C = 7075.616140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.216 3.784 3 H -0.030 1.030 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.271 1.271 12 N -0.681 5.681 13 C 0.034 3.966 14 C 0.133 3.867 15 O -0.557 6.557 16 C -0.148 4.148 17 C -0.580 4.580 18 S 2.422 3.578 19 O -0.986 6.986 20 O -0.978 6.978 21 C -0.579 4.579 22 C -0.102 4.102 23 H 0.030 0.970 24 H 0.052 0.948 25 H 0.020 0.980 26 H 0.262 0.738 27 H 0.336 0.664 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.394 0.606 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.101 0.899 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.103 -3.558 -14.534 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.108 3.892 3 H -0.012 1.012 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.785 3.215 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.196 1.196 12 N -0.314 5.314 13 C -0.096 4.096 14 C 0.091 3.909 15 O -0.365 6.365 16 C -0.187 4.187 17 C -0.711 4.711 18 S 2.609 3.391 19 O -0.983 6.983 20 O -0.975 6.975 21 C -0.710 4.710 22 C -0.141 4.141 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.156 0.844 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.245 0.755 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.174 0.826 34 H 0.166 0.834 35 H 0.171 0.829 36 H 0.170 0.830 37 H 0.119 0.881 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.177 -3.341 -15.686 16.573 hybrid contribution 0.183 0.074 2.339 2.348 sum 4.360 -3.267 -13.347 14.416 Atomic orbital electron populations 1.21531 0.97828 0.98930 0.98835 1.18882 0.92632 0.90848 0.86882 1.01247 1.21565 1.31751 1.12681 0.91490 0.91895 1.25705 0.95209 0.95600 1.02041 1.70020 1.37497 1.24036 1.24171 0.85590 0.78727 0.78674 0.78478 1.19596 1.21367 1.19620 1.60692 1.32366 1.33137 1.05226 1.22623 1.00794 0.94666 0.91511 1.21124 0.87957 0.88745 0.93074 1.86329 1.62427 1.42370 1.45401 1.22095 0.97991 0.99141 0.99454 1.29948 1.12986 1.12421 1.15786 1.07642 0.77923 0.76419 0.77126 1.93527 1.87116 1.65065 1.52596 1.93531 1.54265 1.63332 1.86403 1.29924 1.20911 1.14029 1.06130 1.21354 1.05964 0.97131 0.89653 0.95107 0.92893 0.96049 0.92939 0.84366 0.91255 0.95235 0.75519 0.88890 0.88187 0.82602 0.83364 0.82867 0.83036 0.88061 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.31 9.19 71.98 0.66 -4.65 16 2 C 0.22 10.16 2.60 44.17 0.11 10.28 16 3 H -0.03 -1.59 7.80 -2.39 -0.02 -1.61 16 4 C -0.54 -27.55 8.59 25.60 0.22 -27.33 16 5 H 0.06 3.10 7.62 -2.91 -0.02 3.08 16 6 C 0.01 0.73 5.31 84.66 0.45 1.18 16 7 N -0.92 -51.24 11.33 21.45 0.24 -51.00 16 8 Si 0.96 41.67 29.54 68.60 2.03 43.70 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 10 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 12 N -0.68 -24.20 5.81 -495.45 -2.88 -27.08 16 13 C 0.03 1.00 4.68 86.30 0.40 1.41 16 14 C 0.13 2.83 0.77 -11.07 -0.01 2.82 16 15 O -0.56 -11.63 10.72 -148.98 -1.60 -13.23 16 16 C -0.15 -2.86 4.60 30.47 0.14 -2.72 16 17 C -0.58 -9.10 6.17 71.99 0.44 -8.66 16 18 S 2.42 46.49 5.30 -56.49 -0.30 46.19 16 19 O -0.99 -25.66 18.10 -127.38 -2.31 -27.97 16 20 O -0.98 -25.36 17.96 -127.38 -2.29 -27.64 16 21 C -0.58 -8.75 6.17 71.99 0.44 -8.30 16 22 C -0.10 -1.83 4.82 30.47 0.15 -1.68 16 23 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.05 2.79 6.08 -2.39 -0.01 2.77 16 25 H 0.02 0.89 7.45 -2.39 -0.02 0.87 16 26 H 0.26 13.99 8.31 -92.70 -0.77 13.22 16 27 H 0.34 11.27 5.84 -89.70 -0.52 10.74 16 28 H 0.07 2.18 7.44 -2.38 -0.02 2.16 16 29 H 0.03 0.90 8.06 -2.39 -0.02 0.88 16 30 H 0.39 7.84 8.65 -74.06 -0.64 7.20 16 31 H 0.09 1.77 8.02 -2.39 -0.02 1.75 16 32 H 0.10 2.03 5.91 -2.39 -0.01 2.02 16 33 H 0.16 2.00 7.35 -2.39 -0.02 1.98 16 34 H 0.15 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.15 2.11 7.35 -2.38 -0.02 2.10 16 36 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.10 1.72 8.10 -2.39 -0.02 1.70 16 38 H 0.10 1.68 8.02 -2.39 -0.02 1.66 16 Total: -1.00 -68.29 309.39 -4.17 -72.47 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.09 Total: 22.22 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 3.02 Total: -37.65 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -2.64 Total: -78.08 kcal Atomic # 8 Polarization: -62.65 SS G_CDS: -6.19 Total: -68.84 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 46.49 SS G_CDS: -0.30 Total: 46.19 kcal Total: -68.29 -4.17 -72.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309534704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.714 kcal (2) G-P(sol) polarization free energy of solvation -68.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds