Wall clock time and date at job start Mon Mar 30 2020 02:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 113.99871 * 2 1 4 4 C 1.53002 * 109.47433 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46750 * 64.99683 * 4 3 2 6 6 C 1.46504 * 120.00253 * 275.00306 * 5 4 3 7 7 S 1.65603 * 119.99754 * 95.00412 * 5 4 3 8 8 O 1.42096 * 104.27959 * 333.92818 * 7 5 4 9 9 O 1.42102 * 104.27940 * 206.06743 * 7 5 4 10 10 C 1.81405 * 104.44925 * 90.00114 * 7 5 4 11 11 C 1.52995 * 109.47240 * 186.18214 * 10 7 5 12 12 C 1.50710 * 115.54667 * 295.94899 * 11 10 7 13 13 H 1.07999 * 119.99746 * 114.86300 * 12 11 10 14 14 C 1.37872 * 119.99825 * 295.13041 * 12 11 10 15 15 N 1.31511 * 120.00173 * 174.17534 * 14 12 11 16 16 Si 1.86805 * 120.00025 * 354.18549 * 14 12 11 17 17 H 1.48505 * 109.47123 * 89.27214 * 16 14 12 18 18 H 1.48500 * 109.46964 * 209.26866 * 16 14 12 19 19 H 1.48497 * 109.46977 * 329.27203 * 16 14 12 20 20 C 1.53005 * 117.50202 * 81.61256 * 11 10 7 21 21 C 1.53001 * 117.50166 * 150.27679 * 11 10 7 22 22 H 1.09003 * 109.47453 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47353 * 300.00190 * 1 2 3 24 24 H 1.09004 * 109.47131 * 59.99906 * 1 2 3 25 25 H 1.09003 * 109.47039 * 60.00134 * 3 2 1 26 26 H 1.08996 * 109.47258 * 299.99946 * 3 2 1 27 27 H 1.09005 * 109.47090 * 305.00494 * 4 3 2 28 28 H 1.08994 * 109.47607 * 184.99801 * 4 3 2 29 29 H 1.09006 * 109.46926 * 269.99948 * 6 5 4 30 30 H 1.08997 * 109.47064 * 30.00232 * 6 5 4 31 31 H 1.09004 * 109.46733 * 150.00400 * 6 5 4 32 32 H 1.08999 * 109.47208 * 66.17645 * 10 7 5 33 33 H 1.09003 * 109.46777 * 306.17662 * 10 7 5 34 34 H 0.97002 * 120.00575 * 179.97438 * 15 14 12 35 35 H 1.08996 * 117.50015 * 215.00257 * 20 11 10 36 36 H 1.08996 * 117.49817 * 0.02796 * 20 11 10 37 37 H 1.08996 * 117.49607 * 359.97438 * 21 11 10 38 38 H 1.09005 * 117.49413 * 144.97215 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0014 -0.8954 -1.3758 7 16 4.4473 1.5122 -2.5244 8 8 3.7502 2.7347 -2.3276 9 8 4.2046 0.7066 -3.6696 10 6 6.2289 1.7486 -2.2785 11 6 6.7593 2.7421 -3.3141 12 6 6.6663 2.2955 -4.7504 13 1 6.0248 2.8243 -5.4398 14 6 7.3958 1.2085 -5.1830 15 7 7.2290 0.7482 -6.4035 16 14 8.6210 0.3894 -4.0352 17 1 7.9360 -0.6742 -3.2574 18 1 9.7210 -0.2108 -4.8321 19 1 9.1799 1.4018 -3.1036 20 6 6.5713 4.2327 -3.0242 21 6 7.9618 3.6012 -2.9178 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.6885 1.8464 0.8900 26 1 1.6885 1.8464 -0.8899 27 1 3.8508 0.5686 0.8427 28 1 3.9784 2.1766 0.0902 29 1 4.9747 -1.2707 -1.0592 30 1 3.2233 -1.3272 -0.7464 31 1 3.8249 -1.1742 -2.4147 32 1 6.7417 0.7938 -2.3951 33 1 6.4089 2.1377 -1.2763 34 1 7.7424 -0.0164 -6.7080 35 1 6.3805 4.8902 -3.8723 36 1 6.0702 4.5054 -2.0955 37 1 8.3747 3.4588 -1.9192 38 1 8.6858 3.8430 -3.6960 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331734942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:39 Heat of formation + Delta-G solvation = -83.062141 kcal Electronic energy + Delta-G solvation = -21104.054821 eV Core-core repulsion = 17882.445491 eV Total energy + Delta-G solvation = -3221.609330 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.18080 -37.08146 -36.34583 -35.72619 -35.03311 -32.18593 -30.04060 -28.54469 -26.72757 -25.57697 -25.12829 -22.48304 -21.62560 -19.38693 -18.32812 -17.27259 -16.75866 -16.32211 -16.06718 -15.67372 -15.27375 -14.96358 -14.81861 -14.03868 -13.85731 -13.46094 -13.08182 -12.71842 -12.56147 -12.36549 -12.26751 -12.13116 -11.95453 -11.34855 -11.28907 -11.14651 -10.93706 -10.89569 -10.76757 -10.71334 -10.48821 -10.13553 -9.69902 -9.60603 -9.15110 -8.86599 -8.70183 -8.37184 -6.15797 -4.21868 0.94571 3.16342 3.28810 3.30375 3.36448 3.73748 4.34523 4.51416 4.78736 4.79909 4.85556 5.04017 5.13911 5.18220 5.29690 5.34707 5.39778 5.42297 5.53954 5.61571 5.71515 5.78718 5.89823 5.95468 6.04295 6.19842 6.25413 6.26502 6.46891 6.62252 6.83620 6.88521 7.08428 7.10842 7.60446 8.39721 8.88601 9.45601 10.95883 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026123 B = 0.006492 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.588522 B = 4312.110660 C = 4652.593644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.040 3.960 4 C 0.129 3.871 5 N -1.010 6.010 6 C 0.085 3.915 7 S 2.614 3.386 8 O -0.966 6.966 9 O -0.930 6.930 10 C -0.583 4.583 11 C 0.001 3.999 12 C -0.511 4.511 13 H 0.086 0.914 14 C 0.094 3.906 15 N -0.876 5.876 16 Si 0.857 3.143 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.247 1.247 20 C -0.179 4.179 21 C -0.178 4.178 22 H 0.083 0.917 23 H 0.038 0.962 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.268 0.732 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.029 -1.085 15.597 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.038 4.038 4 C 0.003 3.997 5 N -0.847 5.847 6 C -0.060 4.060 7 S 2.710 3.290 8 O -0.956 6.956 9 O -0.920 6.920 10 C -0.714 4.714 11 C -0.002 4.002 12 C -0.548 4.548 13 H 0.104 0.896 14 C -0.112 4.112 15 N -0.511 5.511 16 Si 0.684 3.316 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.170 1.170 20 C -0.216 4.216 21 C -0.217 4.217 22 H 0.102 0.898 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.136 0.864 33 H 0.126 0.874 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.452 -1.124 14.774 16.585 hybrid contribution 1.129 -0.511 0.993 1.588 sum -6.323 -1.635 15.767 17.066 Atomic orbital electron populations 1.22727 0.81495 1.02504 0.99886 1.87864 1.19323 1.27942 1.95422 1.23131 0.94679 0.84911 1.01124 1.21227 0.92344 0.98828 0.87314 1.57805 1.80735 1.16732 1.29389 1.21563 1.01493 0.78879 1.04055 1.05077 0.77434 0.73597 0.72936 1.93485 1.70794 1.45840 1.85503 1.93584 1.83989 1.68177 1.46211 1.30354 1.25391 1.09117 1.06519 1.18844 1.00031 0.87360 0.93978 1.20343 1.28859 1.14899 0.90698 0.89641 1.24885 0.95863 0.95667 0.94793 1.69874 1.39750 1.24156 1.17310 0.87175 0.82007 0.80358 0.82080 1.20168 1.21252 1.17049 1.22961 1.00009 0.96682 1.01918 1.23069 0.91525 1.06666 1.00480 0.89825 0.94363 0.94027 0.92564 0.91998 0.89945 0.88778 0.93619 0.90000 0.89922 0.86420 0.87439 0.92234 0.88881 0.90109 0.91094 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.98 9.08 -35.23 -0.32 -5.30 16 3 C 0.04 0.50 6.28 37.16 0.23 0.73 16 4 C 0.13 1.63 5.69 -4.04 -0.02 1.61 16 5 N -1.01 -16.20 3.10 -121.75 -0.38 -16.58 16 6 C 0.09 1.26 10.46 59.85 0.63 1.88 16 7 S 2.61 54.15 5.08 -107.50 -0.55 53.60 16 8 O -0.97 -20.63 16.76 -57.54 -0.96 -21.59 16 9 O -0.93 -23.36 16.20 -57.54 -0.93 -24.29 16 10 C -0.58 -11.84 5.67 37.16 0.21 -11.63 16 11 C 0.00 0.01 0.81 -155.65 -0.13 -0.11 16 12 C -0.51 -14.39 8.68 -34.44 -0.30 -14.68 16 13 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 14 C 0.09 2.69 5.47 -17.82 -0.10 2.59 16 15 N -0.88 -26.81 13.96 55.43 0.77 -26.04 16 16 Si 0.86 20.82 25.03 -169.99 -4.25 16.57 16 17 H -0.28 -6.40 6.85 56.52 0.39 -6.02 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.25 -5.55 5.84 56.52 0.33 -5.22 16 20 C -0.18 -3.65 9.96 -26.69 -0.27 -3.92 16 21 C -0.18 -3.67 8.12 -26.69 -0.22 -3.89 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.89 7.91 -51.93 -0.41 0.48 16 27 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 28 H 0.09 1.06 7.61 -51.93 -0.40 0.67 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.06 6.67 -51.93 -0.35 0.72 16 31 H 0.08 1.36 6.91 -51.93 -0.36 1.00 16 32 H 0.12 2.45 4.88 -51.92 -0.25 2.19 16 33 H 0.11 1.72 8.10 -51.92 -0.42 1.30 16 34 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 LS Contribution 320.97 15.07 4.84 4.84 Total: -1.00 -34.31 320.97 -6.68 -40.99 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.06 Total: 3.81 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 1.16 Total: -26.01 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.40 Total: -42.62 kcal Atomic # 8 Polarization: -48.97 SS G_CDS: -2.22 Total: -51.18 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.25 Total: 16.57 kcal Atomic # 16 Polarization: 54.15 SS G_CDS: -0.55 Total: 53.60 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.31 -6.68 -40.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331734942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.070 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds