Wall clock time and date at job start Mon Mar 30 2020 02:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 113.99871 * 2 1 4 4 C 1.53002 * 109.47433 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46750 * 64.99683 * 4 3 2 6 6 C 1.46504 * 120.00253 * 275.00306 * 5 4 3 7 7 S 1.65603 * 119.99754 * 95.00412 * 5 4 3 8 8 O 1.42096 * 104.27959 * 333.92818 * 7 5 4 9 9 O 1.42102 * 104.27940 * 206.06743 * 7 5 4 10 10 C 1.81405 * 104.44925 * 90.00114 * 7 5 4 11 11 C 1.52995 * 109.47240 * 186.18214 * 10 7 5 12 12 C 1.50710 * 115.54667 * 295.94899 * 11 10 7 13 13 H 1.07999 * 119.99746 * 114.86300 * 12 11 10 14 14 C 1.37872 * 119.99825 * 295.13041 * 12 11 10 15 15 N 1.31511 * 120.00173 * 174.17534 * 14 12 11 16 16 Si 1.86805 * 120.00025 * 354.18549 * 14 12 11 17 17 H 1.48505 * 109.47123 * 89.27214 * 16 14 12 18 18 H 1.48500 * 109.46964 * 209.26866 * 16 14 12 19 19 H 1.48497 * 109.46977 * 329.27203 * 16 14 12 20 20 C 1.53005 * 117.50202 * 81.61256 * 11 10 7 21 21 C 1.53001 * 117.50166 * 150.27679 * 11 10 7 22 22 H 1.09003 * 109.47453 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47353 * 300.00190 * 1 2 3 24 24 H 1.09004 * 109.47131 * 59.99906 * 1 2 3 25 25 H 1.09003 * 109.47039 * 60.00134 * 3 2 1 26 26 H 1.08996 * 109.47258 * 299.99946 * 3 2 1 27 27 H 1.09005 * 109.47090 * 305.00494 * 4 3 2 28 28 H 1.08994 * 109.47607 * 184.99801 * 4 3 2 29 29 H 1.09006 * 109.46926 * 269.99948 * 6 5 4 30 30 H 1.08997 * 109.47064 * 30.00232 * 6 5 4 31 31 H 1.09004 * 109.46733 * 150.00400 * 6 5 4 32 32 H 1.08999 * 109.47208 * 66.17645 * 10 7 5 33 33 H 1.09003 * 109.46777 * 306.17662 * 10 7 5 34 34 H 0.97002 * 120.00575 * 179.97438 * 15 14 12 35 35 H 1.08996 * 117.50015 * 215.00257 * 20 11 10 36 36 H 1.08996 * 117.49817 * 0.02796 * 20 11 10 37 37 H 1.08996 * 117.49607 * 359.97438 * 21 11 10 38 38 H 1.09005 * 117.49413 * 144.97215 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0014 -0.8954 -1.3758 7 16 4.4473 1.5122 -2.5244 8 8 3.7502 2.7347 -2.3276 9 8 4.2046 0.7066 -3.6696 10 6 6.2289 1.7486 -2.2785 11 6 6.7593 2.7421 -3.3141 12 6 6.6663 2.2955 -4.7504 13 1 6.0248 2.8243 -5.4398 14 6 7.3958 1.2085 -5.1830 15 7 7.2290 0.7482 -6.4035 16 14 8.6210 0.3894 -4.0352 17 1 7.9360 -0.6742 -3.2574 18 1 9.7210 -0.2108 -4.8321 19 1 9.1799 1.4018 -3.1036 20 6 6.5713 4.2327 -3.0242 21 6 7.9618 3.6012 -2.9178 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.6885 1.8464 0.8900 26 1 1.6885 1.8464 -0.8899 27 1 3.8508 0.5686 0.8427 28 1 3.9784 2.1766 0.0902 29 1 4.9747 -1.2707 -1.0592 30 1 3.2233 -1.3272 -0.7464 31 1 3.8249 -1.1742 -2.4147 32 1 6.7417 0.7938 -2.3951 33 1 6.4089 2.1377 -1.2763 34 1 7.7424 -0.0164 -6.7080 35 1 6.3805 4.8902 -3.8723 36 1 6.0702 4.5054 -2.0955 37 1 8.3747 3.4588 -1.9192 38 1 8.6858 3.8430 -3.6960 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331734942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:39 Heat of formation + Delta-G solvation = -110.319086 kcal Electronic energy + Delta-G solvation = -21105.236771 eV Core-core repulsion = 17882.445491 eV Total energy + Delta-G solvation = -3222.791279 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.12648 -38.79964 -38.02446 -36.96340 -36.60974 -34.32211 -31.04125 -30.15719 -27.71736 -27.50514 -26.26571 -23.53906 -23.22877 -21.21006 -19.84643 -18.67214 -18.57392 -17.52228 -17.13673 -17.07074 -16.91941 -16.41216 -15.98365 -15.50328 -15.33408 -14.92143 -14.59612 -14.49101 -14.02518 -13.81002 -13.36868 -13.25471 -13.12917 -12.94382 -12.90686 -12.62654 -12.61322 -12.40072 -12.22061 -12.14581 -12.00822 -11.80983 -11.57625 -10.96006 -10.70730 -10.59747 -10.36360 -9.84924 -8.32201 -6.43561 -0.61447 1.27043 1.35910 1.49612 1.90787 2.34029 2.87988 2.92244 2.97501 3.21693 3.35062 3.67069 3.92660 4.04946 4.13972 4.32485 4.38354 4.42602 4.44947 4.53832 4.57696 4.61406 4.63625 4.70915 4.85781 4.91197 4.93029 4.98737 5.07566 5.12811 5.22292 5.49798 5.60867 5.69325 6.21621 6.24555 6.65446 7.27831 8.84409 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026123 B = 0.006492 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.588522 B = 4312.110660 C = 4652.593644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.035 3.965 4 C 0.117 3.883 5 N -1.002 6.002 6 C 0.082 3.918 7 S 2.612 3.388 8 O -0.982 6.982 9 O -0.992 6.992 10 C -0.577 4.577 11 C -0.038 4.038 12 C -0.515 4.515 13 H 0.027 0.973 14 C 0.030 3.970 15 N -0.938 5.938 16 Si 0.914 3.086 17 H -0.257 1.257 18 H -0.290 1.290 19 H -0.207 1.207 20 C -0.172 4.172 21 C -0.158 4.158 22 H 0.097 0.903 23 H 0.059 0.941 24 H 0.031 0.969 25 H 0.089 0.911 26 H 0.032 0.968 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.116 0.884 33 H 0.163 0.837 34 H 0.268 0.732 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.811 -1.056 20.349 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C -0.043 4.043 4 C -0.007 4.007 5 N -0.841 5.841 6 C -0.063 4.063 7 S 2.710 3.290 8 O -0.972 6.972 9 O -0.982 6.982 10 C -0.708 4.708 11 C -0.041 4.041 12 C -0.553 4.553 13 H 0.046 0.954 14 C -0.170 4.170 15 N -0.575 5.575 16 Si 0.736 3.264 17 H -0.183 1.183 18 H -0.217 1.217 19 H -0.129 1.129 20 C -0.209 4.209 21 C -0.197 4.197 22 H 0.116 0.884 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.107 0.893 26 H 0.050 0.950 27 H 0.135 0.865 28 H 0.129 0.871 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.135 0.865 33 H 0.181 0.819 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.267 -1.062 19.546 20.553 hybrid contribution 0.602 -0.437 -0.503 0.898 sum -5.664 -1.499 19.042 19.924 Atomic orbital electron populations 1.22907 0.80208 1.03686 1.00438 1.87819 1.20837 1.28207 1.95535 1.23193 0.94919 0.84952 1.01274 1.21681 0.92402 1.00280 0.86376 1.57419 1.80469 1.16741 1.29488 1.21695 1.03588 0.78176 1.02869 1.04759 0.78099 0.73234 0.72947 1.93448 1.71408 1.46598 1.85795 1.93515 1.85146 1.69541 1.50011 1.30209 1.23826 1.08418 1.08365 1.18777 1.03770 0.89590 0.91918 1.20479 1.27293 1.14368 0.93117 0.95445 1.25888 0.98140 0.96496 0.96481 1.70057 1.41872 1.25440 1.20177 0.86268 0.79099 0.80487 0.80556 1.18262 1.21681 1.12880 1.23078 1.00603 0.94399 1.02870 1.23148 0.90722 1.03646 1.02200 0.88445 0.92277 0.94994 0.89305 0.94959 0.86451 0.87115 0.91167 0.88099 0.92766 0.86545 0.81876 0.92320 0.90338 0.86761 0.86847 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.01 113.37 1.25 1.67 16 2 O -0.40 -9.53 9.08 -148.98 -1.35 -10.88 16 3 C 0.03 0.78 6.28 71.98 0.45 1.24 16 4 C 0.12 2.51 5.69 86.38 0.49 3.00 16 5 N -1.00 -29.84 3.10 -539.11 -1.67 -31.51 16 6 C 0.08 2.25 10.46 127.77 1.34 3.59 16 7 S 2.61 106.52 5.08 -56.49 -0.29 106.23 16 8 O -0.98 -41.41 16.76 -127.65 -2.14 -43.55 16 9 O -0.99 -52.08 16.20 -127.65 -2.07 -54.15 16 10 C -0.58 -21.44 5.67 71.98 0.41 -21.03 16 11 C -0.04 -1.70 0.81 -52.92 -0.04 -1.74 16 12 C -0.52 -30.02 8.68 25.60 0.22 -29.80 16 13 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 14 C 0.03 1.75 5.47 84.65 0.46 2.21 16 15 N -0.94 -60.55 13.96 21.45 0.30 -60.25 16 16 Si 0.91 41.90 25.03 68.60 1.72 43.62 16 17 H -0.26 -10.97 6.85 99.48 0.68 -10.29 16 18 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 19 H -0.21 -8.09 5.84 99.48 0.58 -7.51 16 20 C -0.17 -6.62 9.96 30.62 0.30 -6.32 16 21 C -0.16 -5.86 8.12 30.62 0.25 -5.61 16 22 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.03 0.91 7.91 -2.39 -0.02 0.89 16 27 H 0.12 1.75 8.11 -2.38 -0.02 1.73 16 28 H 0.11 1.99 7.61 -2.39 -0.02 1.98 16 29 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.10 2.38 6.67 -2.39 -0.02 2.36 16 31 H 0.05 1.80 6.91 -2.38 -0.02 1.79 16 32 H 0.12 4.40 4.88 -2.39 -0.01 4.39 16 33 H 0.16 4.16 8.10 -2.39 -0.02 4.14 16 34 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 35 H 0.08 3.19 8.14 -2.39 -0.02 3.18 16 36 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 37 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.08 3.17 8.14 -2.38 -0.02 3.16 16 Total: -1.00 -80.91 320.97 0.51 -80.40 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.88 Total: 22.87 kcal Atomic # 6 Polarization: -57.92 SS G_CDS: 5.13 Total: -52.79 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -1.37 Total: -91.76 kcal Atomic # 8 Polarization: -103.02 SS G_CDS: -5.56 Total: -108.58 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.72 Total: 43.62 kcal Atomic # 16 Polarization: 106.52 SS G_CDS: -0.29 Total: 106.23 kcal Total: -80.91 0.51 -80.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331734942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.914 kcal (2) G-P(sol) polarization free energy of solvation -80.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds