Wall clock time and date at job start Mon Mar 30 2020 01:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46860 * 2 1 4 4 C 1.52994 * 109.46945 * 240.00078 * 2 1 3 5 5 O 1.42901 * 109.47468 * 65.00238 * 4 2 1 6 6 C 1.53004 * 109.47145 * 119.99922 * 2 1 3 7 7 N 1.46500 * 109.46979 * 295.00219 * 6 2 1 8 8 S 1.65597 * 119.99521 * 165.00081 * 7 6 2 9 9 O 1.42101 * 104.27517 * 181.06873 * 8 7 6 10 10 O 1.42095 * 104.27833 * 308.92478 * 8 7 6 11 11 C 1.81399 * 104.45196 * 65.00023 * 8 7 6 12 12 C 1.53000 * 109.47532 * 173.87396 * 11 8 7 13 13 C 1.50704 * 115.54876 * 65.26632 * 12 11 8 14 14 H 1.07998 * 120.00134 * 268.54816 * 13 12 11 15 15 C 1.37878 * 119.99718 * 88.55106 * 13 12 11 16 16 N 1.31519 * 119.99548 * 174.70131 * 15 13 12 17 17 Si 1.86800 * 120.00253 * 354.70017 * 15 13 12 18 18 H 1.48497 * 109.46913 * 92.55249 * 17 15 13 19 19 H 1.48491 * 109.47085 * 212.55266 * 17 15 13 20 20 H 1.48505 * 109.46663 * 332.55243 * 17 15 13 21 21 C 1.53001 * 117.49806 * 279.60542 * 12 11 8 22 22 C 1.53000 * 117.50035 * 210.93990 * 12 11 8 23 23 H 1.08997 * 109.47208 * 59.99788 * 1 2 3 24 24 H 1.09000 * 109.47552 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47493 * 299.99869 * 1 2 3 26 26 H 1.08997 * 109.47624 * 304.99849 * 4 2 1 27 27 H 1.09004 * 109.47097 * 184.99822 * 4 2 1 28 28 H 0.96695 * 114.00423 * 180.02562 * 5 4 2 29 29 H 1.09002 * 109.46452 * 55.00025 * 6 2 1 30 30 H 1.08996 * 109.46902 * 175.00056 * 6 2 1 31 31 H 0.96995 * 120.00322 * 344.99666 * 7 6 2 32 32 H 1.09004 * 109.46677 * 293.87033 * 11 8 7 33 33 H 1.08998 * 109.47210 * 53.86899 * 11 8 7 34 34 H 0.97006 * 119.99817 * 180.02562 * 16 15 13 35 35 H 1.09000 * 117.49753 * 359.97438 * 21 12 11 36 36 H 1.08992 * 117.50381 * 145.01817 * 21 12 11 37 37 H 1.09000 * 117.49663 * 214.97156 * 22 12 11 38 38 H 1.08999 * 117.49868 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 8 1.6619 0.0168 -2.4131 6 6 2.0400 -0.7212 1.2493 7 7 1.6524 0.0354 2.4424 8 16 1.7355 -0.6746 3.9361 9 8 1.2684 0.3288 4.8274 10 8 1.0344 -1.9007 3.7810 11 6 3.5048 -0.9811 4.1938 12 6 3.7307 -1.5011 5.6149 13 6 3.1255 -2.8475 5.9182 14 1 2.1280 -2.9115 6.3272 15 6 3.8454 -3.9978 5.6736 16 7 3.3605 -5.1660 6.0341 17 14 5.5091 -3.8969 4.8304 18 1 6.5792 -3.8067 5.8560 19 1 5.7186 -5.1113 4.0019 20 1 5.5520 -2.6924 3.9628 21 6 3.7669 -0.4718 6.7463 22 6 5.0589 -1.1551 6.2910 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6054 -1.7197 -1.2952 27 1 3.1263 -0.7994 -1.2056 28 1 1.9525 -0.3832 -3.2441 29 1 1.6053 -1.7198 1.2951 30 1 3.1263 -0.7994 1.2056 31 1 1.3471 0.9521 2.3574 32 1 3.8532 -1.7235 3.4757 33 1 4.0585 -0.0527 4.0543 34 1 3.8671 -5.9752 5.8624 35 1 3.6301 0.5758 6.4782 36 1 3.3534 -0.7686 7.7102 37 1 5.4947 -1.9011 6.9555 38 1 5.7719 -0.5573 5.7232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331754945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:31 Heat of formation + Delta-G solvation = -137.534131 kcal Electronic energy + Delta-G solvation = -20544.963801 eV Core-core repulsion = 17320.992389 eV Total energy + Delta-G solvation = -3223.971412 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.88917 -38.82775 -37.95597 -36.84917 -36.59972 -34.28453 -33.05312 -30.07980 -27.69137 -27.60070 -25.90879 -23.34431 -21.61601 -21.20125 -20.18467 -18.63420 -18.53502 -18.20425 -17.14998 -16.92985 -16.77834 -16.42743 -15.73551 -15.50597 -15.19039 -14.81703 -14.70368 -14.55914 -13.92833 -13.78931 -13.43452 -13.20995 -13.01498 -12.95024 -12.89077 -12.66018 -12.39102 -12.37556 -12.03962 -11.92159 -11.73709 -11.67224 -11.60892 -10.95995 -10.82266 -10.71909 -10.54363 -10.08980 -8.31040 -6.44605 -0.56399 1.37297 1.37976 1.51922 2.01351 2.37044 2.88101 3.01653 3.16445 3.30292 3.48762 3.75401 3.89907 3.90978 4.17580 4.23076 4.34346 4.37981 4.51499 4.56109 4.59453 4.63289 4.71118 4.85575 4.86452 4.94440 5.03779 5.09871 5.22358 5.29495 5.38557 5.45835 5.62831 6.16494 6.20719 6.66955 6.95149 7.28079 8.85360 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020185 B = 0.005903 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.840674 B = 4741.943392 C = 5297.217162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 H 0.094 0.906 4 C 0.079 3.921 5 O -0.589 6.589 6 C 0.108 3.892 7 N -1.112 6.112 8 S 2.621 3.379 9 O -0.995 6.995 10 O -0.996 6.996 11 C -0.571 4.571 12 C -0.034 4.034 13 C -0.514 4.514 14 H 0.026 0.974 15 C 0.024 3.976 16 N -0.943 5.943 17 Si 0.935 3.065 18 H -0.265 1.265 19 H -0.294 1.294 20 H -0.210 1.210 21 C -0.175 4.175 22 C -0.167 4.167 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.398 0.602 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.423 0.577 32 H 0.135 0.865 33 H 0.160 0.840 34 H 0.268 0.732 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 12.512 -16.185 20.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.112 0.888 4 C 0.001 3.999 5 O -0.398 6.398 6 C -0.018 4.018 7 N -0.873 5.873 8 S 2.718 3.282 9 O -0.985 6.985 10 O -0.985 6.985 11 C -0.704 4.704 12 C -0.036 4.036 13 C -0.551 4.551 14 H 0.044 0.956 15 C -0.175 4.175 16 N -0.581 5.581 17 Si 0.757 3.243 18 H -0.190 1.190 19 H -0.221 1.221 20 H -0.132 1.132 21 C -0.212 4.212 22 C -0.206 4.206 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.248 0.752 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.260 0.740 32 H 0.153 0.847 33 H 0.178 0.822 34 H 0.077 0.923 35 H 0.131 0.869 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.093 12.334 -15.179 19.802 hybrid contribution 0.830 -0.846 -0.409 1.254 sum 3.923 11.488 -15.588 19.758 Atomic orbital electron populations 1.21805 0.94999 1.01868 1.01871 1.21240 0.96696 1.01118 0.92193 0.88791 1.22138 0.99216 0.93987 0.84597 1.86394 1.82087 1.53922 1.17371 1.21482 1.01052 0.95238 0.84003 1.55391 1.83609 1.26469 1.21863 1.04379 0.78477 0.72756 0.72614 1.93472 1.80540 1.59841 1.64626 1.93520 1.71478 1.48313 1.85206 1.30155 1.23799 1.11088 1.05332 1.18794 1.01632 0.94910 0.88299 1.20453 1.01297 0.89465 1.43865 0.95559 1.25994 1.02571 0.94164 0.94761 1.70082 1.41132 0.99263 1.47621 0.85950 0.78718 0.79445 0.80171 1.19000 1.22098 1.13237 1.23105 1.01717 0.97470 0.98954 1.23095 0.90642 1.03018 1.03829 0.91651 0.93278 0.92905 0.92927 0.91407 0.75230 0.91380 0.88882 0.74047 0.84681 0.82208 0.92288 0.86892 0.90376 0.90326 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.97 71.98 0.65 -2.41 16 2 C -0.09 -1.66 2.65 -10.79 -0.03 -1.69 16 3 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 4 C 0.08 1.17 6.43 71.98 0.46 1.63 16 5 O -0.59 -8.88 13.19 -148.98 -1.97 -10.85 16 6 C 0.11 2.33 5.52 86.38 0.48 2.81 16 7 N -1.11 -28.06 5.41 -187.48 -1.02 -29.07 16 8 S 2.62 98.01 5.19 -56.49 -0.29 97.72 16 9 O -0.99 -41.19 18.08 -127.65 -2.31 -43.50 16 10 O -1.00 -48.07 17.16 -127.65 -2.19 -50.26 16 11 C -0.57 -19.59 5.55 71.98 0.40 -19.19 16 12 C -0.03 -1.47 0.79 -52.93 -0.04 -1.52 16 13 C -0.51 -29.30 8.77 25.60 0.22 -29.08 16 14 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 15 C 0.02 1.37 5.47 84.65 0.46 1.84 16 16 N -0.94 -59.39 13.96 21.45 0.30 -59.09 16 17 Si 0.94 41.12 24.96 68.60 1.71 42.83 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.21 -7.62 5.68 99.48 0.57 -7.05 16 21 C -0.18 -6.79 9.96 30.62 0.30 -6.48 16 22 C -0.17 -6.17 7.67 30.62 0.23 -5.94 16 23 H 0.06 1.29 7.82 -2.39 -0.02 1.27 16 24 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.05 1.12 7.54 -2.38 -0.02 1.10 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.40 2.43 9.12 -74.06 -0.68 1.76 16 29 H 0.07 1.72 7.69 -2.39 -0.02 1.70 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.42 8.69 8.33 -96.75 -0.81 7.88 16 32 H 0.14 4.39 6.53 -2.39 -0.02 4.37 16 33 H 0.16 3.79 8.09 -2.39 -0.02 3.77 16 34 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 35 H 0.11 3.66 8.14 -2.39 -0.02 3.65 16 36 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 37 H 0.08 3.13 7.34 -2.39 -0.02 3.11 16 38 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -81.56 323.62 -3.18 -84.74 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: -0.56 Total: 27.52 kcal Atomic # 6 Polarization: -63.18 SS G_CDS: 3.14 Total: -60.04 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -0.72 Total: -88.16 kcal Atomic # 8 Polarization: -98.14 SS G_CDS: -6.46 Total: -104.61 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.71 Total: 42.83 kcal Atomic # 16 Polarization: 98.01 SS G_CDS: -0.29 Total: 97.72 kcal Total: -81.56 -3.18 -84.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331754945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.798 kcal (2) G-P(sol) polarization free energy of solvation -81.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds